Wall clock time and date at job start Mon Mar 30 2020 03:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47556 * 2 1 4 4 H 1.09004 * 109.47035 * 303.94747 * 3 2 1 5 5 C 1.52996 * 109.47300 * 183.94528 * 3 2 1 6 6 N 1.46899 * 109.47087 * 63.94769 * 3 2 1 7 7 C 1.46953 * 111.00363 * 68.56803 * 6 3 2 8 8 C 1.53046 * 109.36936 * 183.18744 * 7 6 3 9 9 N 1.46955 * 109.36538 * 301.60432 * 8 7 6 10 10 C 1.46899 * 111.00049 * 183.18688 * 9 8 7 11 11 H 1.08998 * 109.47387 * 176.19923 * 10 9 8 12 12 C 1.53005 * 109.47019 * 296.19830 * 10 9 8 13 13 C 1.50698 * 109.47547 * 56.19574 * 10 9 8 14 14 H 1.08001 * 119.99629 * 0.02562 * 13 10 9 15 15 C 1.37872 * 120.00349 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00137 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00005 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.46875 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46917 * 120.00542 * 17 15 13 20 20 H 1.48494 * 109.47244 * 240.00401 * 17 15 13 21 21 C 1.46951 * 110.88375 * 59.31653 * 9 8 7 22 22 C 1.46955 * 111.00049 * 192.37252 * 6 3 2 23 23 H 1.08992 * 109.47872 * 174.77753 * 1 2 3 24 24 H 1.09002 * 109.46840 * 294.78335 * 1 2 3 25 25 H 1.09009 * 109.46885 * 54.77561 * 1 2 3 26 26 H 1.09007 * 109.46682 * 240.00120 * 2 1 3 27 27 H 1.09002 * 109.47038 * 120.00507 * 2 1 3 28 28 H 1.09001 * 109.47339 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47255 * 300.00084 * 5 3 2 30 30 H 1.09005 * 109.47232 * 60.00355 * 5 3 2 31 31 H 1.08997 * 109.48833 * 303.16245 * 7 6 3 32 32 H 1.09007 * 109.48717 * 63.22167 * 7 6 3 33 33 H 1.09006 * 109.48858 * 61.56850 * 8 7 6 34 34 H 1.08995 * 109.49103 * 181.63067 * 8 7 6 35 35 H 1.09006 * 109.46958 * 180.02562 * 12 10 9 36 36 H 1.08999 * 109.46897 * 300.00103 * 12 10 9 37 37 H 1.08998 * 109.46965 * 59.99835 * 12 10 9 38 38 H 0.97000 * 120.00344 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.49637 * 180.71376 * 21 9 8 40 40 H 1.09000 * 109.50551 * 60.65765 * 21 9 8 41 41 H 1.09002 * 109.48899 * 296.77470 * 22 6 3 42 42 H 1.09000 * 109.49009 * 56.82329 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6201 1.9763 -0.8525 5 6 3.5668 1.4435 -0.0992 6 7 1.6299 2.1068 1.2443 7 6 2.3376 1.5415 2.4014 8 6 1.8257 2.2036 3.6827 9 7 2.0358 3.6556 3.5984 10 6 1.6256 4.3200 4.8426 11 1 1.8541 5.3839 4.7788 12 6 0.1211 4.1330 5.0486 13 6 2.3706 3.7150 6.0045 14 1 3.0784 2.9170 5.8354 15 6 2.1495 4.1809 7.2831 16 7 1.2879 5.1531 7.4890 17 14 3.0736 3.4314 8.7232 18 1 3.9781 2.3626 8.2285 19 1 3.8744 4.4837 9.3990 20 1 2.1032 2.8526 9.6867 21 6 1.3280 4.2210 2.4413 22 6 1.8400 3.5588 1.1599 23 1 -0.3634 -1.0233 -0.0935 24 1 -0.3633 0.4308 0.9330 25 1 -0.3633 0.5928 -0.8396 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.9303 2.4711 -0.0988 29 1 3.9867 0.9096 0.7533 30 1 3.8713 0.9505 -1.0225 31 1 2.1564 0.4677 2.4494 32 1 3.4071 1.7258 2.2991 33 1 0.7619 1.9963 3.7991 34 1 2.3697 1.8065 4.5396 35 1 -0.1834 4.6264 5.9717 36 1 -0.4178 4.5705 4.2082 37 1 -0.1074 3.0691 5.1124 38 1 1.1320 5.4806 8.3886 39 1 1.5092 5.2947 2.3932 40 1 0.2585 4.0369 2.5434 41 1 2.9038 3.7662 1.0436 42 1 1.2962 3.9558 0.3028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055066563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:41 Heat of formation + Delta-G solvation = -12.770090 kcal Electronic energy + Delta-G solvation = -18637.676211 eV Core-core repulsion = 16037.734295 eV Total energy + Delta-G solvation = -2599.941916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66042 -38.15643 -35.18030 -33.54138 -31.79479 -31.09968 -29.70676 -27.38986 -26.46172 -24.57051 -24.32407 -22.52275 -21.09386 -19.72545 -18.20327 -17.50362 -16.67391 -15.91957 -15.84489 -15.57272 -15.30827 -15.06100 -14.63470 -14.45964 -14.19283 -13.99774 -13.61903 -13.12395 -12.99378 -12.87228 -12.66886 -12.54987 -12.41631 -12.25925 -12.10158 -11.99354 -11.93181 -11.82727 -11.56600 -11.31042 -11.10553 -10.80508 -10.49886 -9.14185 -8.81272 -8.10938 -6.21946 1.41170 1.42870 1.54551 2.42822 3.02300 3.18389 3.40569 3.88403 4.03659 4.24289 4.28369 4.35289 4.44571 4.48557 4.56346 4.59448 4.70782 4.72215 4.76948 4.84949 4.89878 4.91304 4.96787 5.02832 5.07029 5.15537 5.19763 5.23028 5.27118 5.35759 5.44415 5.55325 5.59940 5.71827 5.79505 6.14592 6.22926 6.28548 6.51359 6.77514 6.92566 7.47459 8.95745 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.005960 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.527208 B = 4697.219001 C = 4881.277533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.079 3.921 4 H 0.087 0.913 5 C -0.181 4.181 6 N -0.535 5.535 7 C 0.066 3.934 8 C 0.070 3.930 9 N -0.541 5.541 10 C 0.215 3.785 11 H 0.004 0.996 12 C -0.153 4.153 13 C -0.515 4.515 14 H 0.058 0.942 15 C 0.010 3.990 16 N -0.921 5.921 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.054 3.946 22 C 0.069 3.931 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.018 0.982 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.064 0.936 40 H 0.026 0.974 41 H 0.036 0.964 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 -8.569 -15.215 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.029 4.029 4 H 0.105 0.895 5 C -0.240 4.240 6 N -0.259 5.259 7 C -0.062 4.062 8 C -0.059 4.059 9 N -0.265 5.265 10 C 0.107 3.893 11 H 0.022 0.978 12 C -0.212 4.212 13 C -0.553 4.553 14 H 0.076 0.924 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.785 3.215 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.074 4.074 22 C -0.059 4.059 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.747 -8.460 -15.082 17.309 hybrid contribution 0.242 0.176 1.266 1.301 sum 0.989 -8.284 -13.816 16.139 Atomic orbital electron populations 1.21588 0.95514 1.00898 1.01562 1.21554 0.96473 0.94664 1.02106 1.21843 0.93496 0.95920 0.91633 0.89515 1.22411 0.97195 1.01679 1.02670 1.62349 1.57059 1.03393 1.03129 1.22128 0.95952 0.98691 0.89389 1.21949 0.98046 0.88558 0.97303 1.62405 1.56674 1.03847 1.03552 1.19037 0.90682 0.93014 0.86545 0.97761 1.22147 0.99813 0.98789 1.00466 1.21424 1.23003 1.19157 0.91707 0.92387 1.25708 0.96182 0.95511 1.01385 1.70028 1.35881 1.28329 1.21906 0.85482 0.78490 0.78392 0.79115 1.19146 1.20732 1.20669 1.22122 0.95906 0.98375 0.91041 1.22066 0.99193 0.87918 0.96739 0.92692 0.93877 0.92808 0.90162 0.92592 0.93416 0.92911 0.90542 0.89666 0.94466 0.96382 0.91753 0.92145 0.95666 0.95511 0.93004 0.91754 0.95552 0.94622 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.73 71.98 0.70 -2.04 16 2 C -0.11 -2.08 5.36 30.59 0.16 -1.92 16 3 C 0.08 1.69 2.31 44.91 0.10 1.79 16 4 H 0.09 1.71 7.98 -2.38 -0.02 1.69 16 5 C -0.18 -3.65 8.39 71.98 0.60 -3.05 16 6 N -0.53 -14.96 4.15 -870.50 -3.61 -18.57 16 7 C 0.07 2.09 4.70 86.31 0.41 2.49 16 8 C 0.07 2.82 4.93 86.31 0.43 3.24 16 9 N -0.54 -23.79 4.73 -874.88 -4.14 -27.93 16 10 C 0.21 11.20 2.42 44.17 0.11 11.31 16 11 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 12 C -0.15 -7.72 8.27 71.98 0.60 -7.12 16 13 C -0.51 -28.69 7.89 25.60 0.20 -28.49 16 14 H 0.06 3.22 6.41 -2.91 -0.02 3.21 16 15 C 0.01 0.59 5.30 84.65 0.45 1.03 16 16 N -0.92 -53.76 11.32 21.45 0.24 -53.51 16 17 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 C 0.05 2.02 5.13 86.31 0.44 2.46 16 22 C 0.07 2.03 5.36 86.31 0.46 2.49 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.04 1.06 7.87 -2.39 -0.02 1.04 16 25 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.06 1.15 6.42 -2.39 -0.02 1.13 16 28 H 0.05 1.05 6.85 -2.39 -0.02 1.03 16 29 H 0.05 1.16 6.39 -2.38 -0.02 1.15 16 30 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.09 2.39 6.36 -2.39 -0.02 2.38 16 32 H 0.04 1.20 6.41 -2.38 -0.02 1.19 16 33 H 0.02 0.77 6.57 -2.38 -0.02 0.75 16 34 H 0.06 2.83 6.14 -2.39 -0.01 2.82 16 35 H 0.06 3.37 6.07 -2.38 -0.01 3.35 16 36 H 0.02 1.14 6.48 -2.39 -0.02 1.13 16 37 H 0.03 1.31 6.56 -2.39 -0.02 1.29 16 38 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.03 1.03 6.48 -2.39 -0.02 1.01 16 41 H 0.04 1.08 6.85 -2.39 -0.02 1.06 16 42 H 0.09 2.25 8.05 -2.39 -0.02 2.23 16 Total: -1.00 -59.96 305.89 0.16 -59.80 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.97 Total: 11.83 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.66 Total: -17.81 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -7.50 Total: -100.01 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -59.96 0.16 -59.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055066563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.033 kcal (2) G-P(sol) polarization free energy of solvation -59.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds