Wall clock time and date at job start Mon Mar 30 2020 03:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 H 1.08992 * 109.47024 * 55.40367 * 3 2 1 5 5 C 1.53001 * 109.46970 * 175.40824 * 3 2 1 6 6 N 1.46905 * 109.47053 * 295.40508 * 3 2 1 7 7 C 1.46957 * 111.00197 * 298.88392 * 6 3 2 8 8 C 1.53044 * 109.38300 * 176.82306 * 7 6 3 9 9 N 1.46958 * 109.36652 * 58.38726 * 8 7 6 10 10 C 1.46895 * 110.99990 * 176.81159 * 9 8 7 11 11 H 1.08995 * 109.47315 * 54.99866 * 10 9 8 12 12 C 1.52998 * 109.47371 * 294.99774 * 10 9 8 13 13 C 1.50701 * 109.46969 * 175.00268 * 10 9 8 14 14 H 1.07999 * 120.00069 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99895 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00164 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99869 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47003 * 90.00225 * 17 15 13 19 19 H 1.48507 * 109.46901 * 210.00214 * 17 15 13 20 20 H 1.48498 * 109.47325 * 330.00041 * 17 15 13 21 21 C 1.46955 * 110.87878 * 300.68324 * 9 8 7 22 22 C 1.46951 * 111.01762 * 175.06909 * 6 3 2 23 23 H 1.08998 * 109.46595 * 305.06151 * 1 2 3 24 24 H 1.08991 * 109.47166 * 65.06432 * 1 2 3 25 25 H 1.09001 * 109.46872 * 185.06564 * 1 2 3 26 26 H 1.09005 * 109.47008 * 239.99950 * 2 1 3 27 27 H 1.08999 * 109.47445 * 120.00219 * 2 1 3 28 28 H 1.08997 * 109.47063 * 299.99599 * 5 3 2 29 29 H 1.08999 * 109.47395 * 60.00182 * 5 3 2 30 30 H 1.08996 * 109.46753 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.49036 * 56.84265 * 7 6 3 32 32 H 1.09004 * 109.48642 * 296.80417 * 7 6 3 33 33 H 1.09004 * 109.49126 * 178.35792 * 8 7 6 34 34 H 1.08997 * 109.49084 * 298.41572 * 8 7 6 35 35 H 1.09001 * 109.46897 * 60.00233 * 12 10 9 36 36 H 1.09003 * 109.47713 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.47644 * 300.00236 * 12 10 9 38 38 H 0.97008 * 120.00321 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.48766 * 179.28638 * 21 9 8 40 40 H 1.09000 * 109.48507 * 299.32528 * 21 9 8 41 41 H 1.09004 * 109.47083 * 63.20284 * 22 6 3 42 42 H 1.08998 * 109.50613 * 303.16047 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6110 1.9795 0.8459 5 6 3.5657 1.4440 0.1155 6 7 1.6430 2.1022 -1.2511 7 6 2.2261 1.4196 -2.4146 8 6 1.7264 2.0868 -3.6980 9 7 2.0978 3.5086 -3.6846 10 6 1.7012 4.1682 -4.9358 11 1 0.6358 4.0139 -5.1060 12 6 2.4952 3.5726 -6.1002 13 6 1.9856 5.6448 -4.8373 14 1 2.4173 6.0526 -3.9352 15 6 1.6946 6.4752 -5.8988 16 7 1.1685 5.9788 -6.9970 17 14 2.0465 8.3057 -5.7763 18 1 3.4231 8.5787 -6.2617 19 1 1.0706 9.0541 -6.6088 20 1 1.9253 8.7396 -4.3613 21 6 1.5142 4.1913 -2.5214 22 6 2.0139 3.5241 -1.2379 23 1 -0.3632 0.5904 0.8412 24 1 -0.3633 0.4332 -0.9318 25 1 -0.3633 -1.0237 0.0907 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8602 0.9545 1.0438 29 1 3.9946 0.9070 -0.7305 30 1 3.9289 2.4717 0.1159 31 1 1.9266 0.3715 -2.4091 32 1 3.3131 1.4873 -2.3688 33 1 2.1807 1.6005 -4.5614 34 1 0.6420 1.9947 -3.7574 35 1 2.2895 2.5045 -6.1714 36 1 2.2013 4.0623 -7.0286 37 1 3.5607 3.7268 -5.9300 38 1 0.9634 6.5631 -7.7438 39 1 1.8138 5.2394 -2.5268 40 1 0.4273 4.1235 -2.5675 41 1 3.0985 3.6161 -1.1787 42 1 1.5600 4.0106 -0.3746 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055066567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:44 Heat of formation + Delta-G solvation = -12.430269 kcal Electronic energy + Delta-G solvation = -18551.894070 eV Core-core repulsion = 15951.966889 eV Total energy + Delta-G solvation = -2599.927180 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62277 -38.04984 -35.21988 -33.55419 -31.85327 -31.27190 -29.84587 -27.39412 -26.46886 -24.52335 -24.12428 -22.11009 -21.33380 -19.91462 -18.34058 -17.61740 -16.62844 -15.96006 -15.73974 -15.66991 -15.44179 -15.01625 -14.70708 -14.35868 -14.24672 -13.91654 -13.63677 -13.14989 -12.93820 -12.76924 -12.70825 -12.55287 -12.40738 -12.25937 -12.08296 -12.04451 -11.93937 -11.83305 -11.54203 -11.33254 -11.11651 -10.77187 -10.50148 -9.15476 -8.91249 -8.11564 -6.23784 1.42310 1.42872 1.53092 2.42084 3.01574 3.16144 3.36203 3.87405 4.02385 4.22527 4.27065 4.32644 4.43914 4.45913 4.53231 4.59030 4.69416 4.73314 4.77984 4.84658 4.88674 4.95981 5.01430 5.04358 5.08210 5.15332 5.19631 5.21244 5.26457 5.34538 5.43658 5.52402 5.58005 5.71445 5.79719 6.16999 6.24881 6.26015 6.43647 6.75525 6.91479 7.45579 8.94784 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039252 B = 0.005772 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.167480 B = 4850.206909 C = 5114.301796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.079 3.921 4 H 0.084 0.916 5 C -0.182 4.182 6 N -0.537 5.537 7 C 0.068 3.932 8 C 0.054 3.946 9 N -0.538 5.538 10 C 0.216 3.784 11 H -0.043 1.043 12 C -0.117 4.117 13 C -0.521 4.521 14 H 0.062 0.938 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.961 3.039 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.267 1.267 21 C 0.070 3.930 22 C 0.068 3.932 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.012 0.988 35 H 0.028 0.972 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.261 0.739 39 H 0.070 0.930 40 H 0.007 0.993 41 H 0.039 0.961 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -10.330 13.878 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.029 4.029 4 H 0.102 0.898 5 C -0.240 4.240 6 N -0.262 5.262 7 C -0.060 4.060 8 C -0.074 4.074 9 N -0.263 5.263 10 C 0.109 3.891 11 H -0.026 1.026 12 C -0.175 4.175 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.787 3.213 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.059 4.059 22 C -0.060 4.060 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.031 0.969 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.026 0.974 41 H 0.057 0.943 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.034 -10.275 13.705 17.249 hybrid contribution -0.083 1.159 -0.613 1.314 sum 1.951 -9.116 13.091 16.071 Atomic orbital electron populations 1.21603 0.95556 1.00994 1.01538 1.21604 0.96428 0.94500 1.02440 1.21850 0.93642 0.95926 0.91508 0.89801 1.22411 0.97146 1.01763 1.02704 1.62360 1.59082 1.02005 1.02742 1.22103 0.97090 0.98002 0.88822 1.22177 0.97089 0.89862 0.98321 1.62251 1.58961 1.01734 1.03338 1.19028 0.90780 0.93119 0.86174 1.02567 1.21601 0.98585 0.96748 1.00583 1.21464 1.41136 0.92601 1.00737 0.92025 1.25740 0.94918 1.03176 0.94953 1.70030 1.44246 1.36551 1.05263 0.85507 0.77888 0.79730 0.78209 1.20084 1.21002 1.19185 1.21974 0.95288 0.98528 0.90114 1.22087 0.98515 0.88624 0.96752 0.92990 0.93890 0.92459 0.92038 0.90070 0.90523 0.92820 0.93353 0.88925 0.94212 0.90914 0.96934 0.95320 0.92212 0.95032 0.92951 0.91144 0.97420 0.94309 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.74 71.98 0.70 -2.02 16 2 C -0.11 -2.05 5.22 30.59 0.16 -1.89 16 3 C 0.08 1.69 2.36 44.91 0.11 1.80 16 4 H 0.08 1.73 8.11 -2.39 -0.02 1.71 16 5 C -0.18 -3.63 8.49 71.98 0.61 -3.02 16 6 N -0.54 -15.27 4.23 -870.50 -3.68 -18.95 16 7 C 0.07 2.01 4.82 86.31 0.42 2.43 16 8 C 0.05 2.05 5.40 86.31 0.47 2.52 16 9 N -0.54 -23.93 4.57 -874.91 -4.00 -27.93 16 10 C 0.22 11.44 2.07 44.17 0.09 11.53 16 11 H -0.04 -2.59 8.13 -2.39 -0.02 -2.61 16 12 C -0.12 -5.93 8.87 71.98 0.64 -5.29 16 13 C -0.52 -29.20 7.90 25.60 0.20 -28.99 16 14 H 0.06 3.40 6.06 -2.91 -0.02 3.39 16 15 C 0.01 0.60 5.30 84.66 0.45 1.05 16 16 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 17 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 C 0.07 2.86 5.26 86.31 0.45 3.32 16 22 C 0.07 2.17 5.25 86.31 0.45 2.62 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.04 1.04 7.88 -2.39 -0.02 1.02 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.16 6.13 -2.38 -0.01 1.15 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.14 6.46 -2.39 -0.02 1.13 16 30 H 0.05 1.07 6.59 -2.39 -0.02 1.05 16 31 H 0.09 2.36 6.08 -2.38 -0.01 2.34 16 32 H 0.04 1.20 6.46 -2.38 -0.02 1.19 16 33 H 0.07 2.71 6.30 -2.38 -0.02 2.70 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.03 1.27 6.46 -2.39 -0.02 1.26 16 36 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 37 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 39 H 0.07 3.12 5.86 -2.38 -0.01 3.11 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.04 1.24 6.60 -2.38 -0.02 1.23 16 42 H 0.09 2.39 8.12 -2.39 -0.02 2.37 16 Total: -1.00 -60.98 308.27 0.31 -60.67 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.97 Total: 9.79 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.75 Total: -15.95 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -7.44 Total: -100.65 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -60.98 0.31 -60.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055066567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.239 kcal (2) G-P(sol) polarization free energy of solvation -60.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds