Wall clock time and date at job start Mon Mar 30 2020 03:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47265 * 2 1 4 4 H 1.09002 * 109.47121 * 57.12152 * 3 2 1 5 5 C 1.53002 * 109.47253 * 297.11741 * 3 2 1 6 6 N 1.46905 * 109.47134 * 177.11687 * 3 2 1 7 7 C 1.46953 * 110.99894 * 302.76051 * 6 3 2 8 8 C 1.53052 * 109.36515 * 176.81147 * 7 6 3 9 9 N 1.46958 * 109.36513 * 58.39883 * 8 7 6 10 10 C 1.46896 * 111.00284 * 176.81372 * 9 8 7 11 11 H 1.09001 * 109.47180 * 178.79851 * 10 9 8 12 12 C 1.53003 * 109.46988 * 58.79795 * 10 9 8 13 13 C 1.50700 * 109.46895 * 298.80376 * 10 9 8 14 14 H 1.07993 * 119.99965 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99840 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00088 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99921 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47166 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46981 * 119.99986 * 17 15 13 20 20 H 1.48500 * 109.47262 * 239.99674 * 17 15 13 21 21 C 1.46960 * 110.88057 * 300.68449 * 9 8 7 22 22 C 1.46958 * 110.99776 * 178.95823 * 6 3 2 23 23 H 1.08999 * 109.47385 * 67.07338 * 1 2 3 24 24 H 1.09002 * 109.47296 * 187.07559 * 1 2 3 25 25 H 1.09000 * 109.46677 * 307.07454 * 1 2 3 26 26 H 1.09004 * 109.46826 * 240.00227 * 2 1 3 27 27 H 1.09002 * 109.47186 * 120.00821 * 2 1 3 28 28 H 1.08996 * 109.46797 * 299.99919 * 5 3 2 29 29 H 1.08997 * 109.47204 * 60.00113 * 5 3 2 30 30 H 1.09001 * 109.46676 * 180.02562 * 5 3 2 31 31 H 1.08998 * 109.49029 * 296.77569 * 7 6 3 32 32 H 1.08998 * 109.49015 * 56.84133 * 7 6 3 33 33 H 1.09002 * 109.48596 * 298.43701 * 8 7 6 34 34 H 1.08995 * 109.49448 * 178.36900 * 8 7 6 35 35 H 1.09001 * 109.47206 * 300.00040 * 12 10 9 36 36 H 1.09000 * 109.46873 * 60.00600 * 12 10 9 37 37 H 1.09000 * 109.46901 * 179.97438 * 12 10 9 38 38 H 0.97000 * 120.00424 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.48437 * 299.34906 * 21 9 8 40 40 H 1.08998 * 109.48909 * 179.28858 * 21 9 8 41 41 H 1.08995 * 109.49048 * 303.15237 * 22 6 3 42 42 H 1.09002 * 109.48681 * 63.22659 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6352 1.9710 0.8631 5 6 1.5902 2.1425 -1.2839 6 7 3.5074 1.4430 0.0697 7 6 3.9784 0.7202 1.2593 8 6 5.5083 0.6751 1.2532 9 7 6.0361 2.0464 1.2302 10 6 7.5034 2.0470 1.2999 11 1 7.8687 3.0732 1.2597 12 6 8.0704 1.2573 0.1184 13 6 7.9453 1.4065 2.5905 14 1 7.2097 1.0365 3.2892 15 6 9.2887 1.2939 2.8796 16 7 10.1845 1.7450 2.0289 17 14 9.8364 0.5007 4.4797 18 1 8.6434 0.0787 5.2568 19 1 10.6774 -0.6863 4.1812 20 1 10.6240 1.4784 5.2728 21 6 5.5650 2.7692 0.0405 22 6 4.0352 2.8143 0.0467 23 1 -0.3634 0.4003 -0.9465 24 1 -0.3634 -1.0198 0.1266 25 1 -0.3633 0.6195 0.8199 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 1.9951 1.6139 -2.1469 29 1 0.5014 2.1421 -1.3356 30 1 1.9540 3.1700 -1.2841 31 1 3.6335 1.2334 2.1569 32 1 3.5846 -0.2960 1.2471 33 1 5.8526 0.1381 0.3693 34 1 5.8607 0.1647 2.1494 35 1 7.7051 0.2310 0.1586 36 1 7.7508 1.7205 -0.8151 37 1 9.1592 1.2581 0.1699 38 1 11.1296 1.6655 2.2321 39 1 5.9101 2.2560 -0.8570 40 1 5.9589 3.7855 0.0528 41 1 3.6828 3.3246 -0.8496 42 1 3.6908 3.3513 0.9306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055066570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:47 Heat of formation + Delta-G solvation = 5.069060 kcal Electronic energy + Delta-G solvation = -18424.105622 eV Core-core repulsion = 15824.937270 eV Total energy + Delta-G solvation = -2599.168353 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.18557 -36.67715 -33.78291 -32.12081 -30.67120 -29.47418 -28.04947 -25.39232 -25.23844 -23.71903 -22.39473 -20.75984 -19.81088 -18.61576 -16.31323 -15.98816 -15.12200 -14.78770 -14.57532 -14.15978 -13.84235 -13.65464 -13.41577 -12.87291 -12.63980 -12.55993 -12.32987 -11.72055 -11.59051 -11.53260 -11.21536 -11.04045 -10.97545 -10.76684 -10.69642 -10.57337 -10.42219 -10.21415 -10.04786 -9.87859 -9.53205 -8.79878 -8.35903 -8.00274 -7.06048 -5.98140 -4.01774 3.31491 3.39332 3.43729 4.11667 4.43768 4.84600 4.90107 5.07088 5.25812 5.33858 5.38279 5.41133 5.50165 5.53169 5.66649 5.81109 5.85821 5.88597 5.91999 5.98728 6.00623 6.05611 6.18681 6.21852 6.31565 6.40185 6.53605 6.70486 6.73287 6.89352 6.93544 7.19751 7.38107 7.41866 7.59180 7.77841 7.87839 8.17820 8.44270 8.65461 9.04523 9.63276 11.08999 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040434 B = 0.005537 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.328354 B = 5055.797031 C = 5481.330008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.080 3.920 4 H 0.035 0.965 5 C -0.146 4.146 6 N -0.535 5.535 7 C 0.054 3.946 8 C 0.065 3.935 9 N -0.533 5.533 10 C 0.210 3.790 11 H 0.038 0.962 12 C -0.170 4.170 13 C -0.498 4.498 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.055 3.945 22 C 0.059 3.941 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.008 0.992 37 H 0.086 0.914 38 H 0.259 0.741 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.446 -1.165 -5.038 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.028 4.028 4 H 0.053 0.947 5 C -0.203 4.203 6 N -0.260 5.260 7 C -0.074 4.074 8 C -0.063 4.063 9 N -0.258 5.258 10 C 0.104 3.896 11 H 0.056 0.944 12 C -0.229 4.229 13 C -0.537 4.537 14 H 0.080 0.920 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.074 4.074 22 C -0.069 4.069 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.027 0.973 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.243 -1.136 -5.044 16.096 hybrid contribution 0.470 -0.385 0.811 1.014 sum -14.773 -1.521 -4.232 15.443 Atomic orbital electron populations 1.21796 0.95935 1.01403 1.01649 1.21633 0.95150 0.96256 1.02752 1.21622 0.88085 0.95969 0.97165 0.94699 1.21918 1.00351 1.00374 0.97696 1.62214 1.07478 1.15781 1.40559 1.22317 0.96838 0.97789 0.90416 1.22001 0.91314 0.91560 1.01438 1.62502 1.13078 1.13937 1.36273 1.19284 0.79995 0.96356 0.93943 0.94412 1.22372 1.05152 0.98710 0.96674 1.21155 0.91422 1.38082 1.03027 0.92001 1.24928 0.96697 0.95784 0.96883 1.69900 1.00970 1.47096 1.35404 0.86486 0.78592 0.78940 0.83648 1.19789 1.21194 1.21103 1.22058 0.92929 0.98928 0.93506 1.22204 0.95839 0.88912 0.99963 0.92629 0.92835 0.92979 0.91248 0.91680 0.91950 0.92446 0.92637 0.94747 0.91001 0.94820 0.89746 0.95165 0.97288 0.89522 0.93114 0.94698 0.91427 0.91066 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.43 37.16 0.35 -1.00 16 2 C -0.12 -1.34 5.20 -26.73 -0.14 -1.48 16 3 C 0.08 1.01 2.16 -67.71 -0.15 0.86 16 4 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 5 C -0.15 -1.58 8.65 37.16 0.32 -1.26 16 6 N -0.53 -8.29 4.58 -226.49 -1.04 -9.33 16 7 C 0.05 0.90 5.26 -3.77 -0.02 0.89 16 8 C 0.07 1.32 4.86 -3.77 -0.02 1.30 16 9 N -0.53 -11.74 4.69 -227.87 -1.07 -12.81 16 10 C 0.21 5.37 2.35 -68.86 -0.16 5.21 16 11 H 0.04 1.06 8.11 -51.93 -0.42 0.64 16 12 C -0.17 -4.20 8.27 37.16 0.31 -3.89 16 13 C -0.50 -13.69 7.90 -34.44 -0.27 -13.97 16 14 H 0.06 1.71 6.77 -52.49 -0.36 1.35 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 16 N -0.89 -25.63 11.32 55.43 0.63 -25.00 16 17 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 C 0.05 1.04 5.25 -3.76 -0.02 1.02 16 22 C 0.06 0.94 5.29 -3.77 -0.02 0.92 16 23 H 0.05 0.46 6.88 -51.93 -0.36 0.10 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.76 6.13 -51.93 -0.32 0.44 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.53 6.67 -51.93 -0.35 0.18 16 30 H 0.05 0.60 6.32 -51.93 -0.33 0.27 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.07 6.02 -51.93 -0.31 0.76 16 33 H 0.03 0.71 6.46 -51.93 -0.34 0.38 16 34 H 0.08 1.83 6.45 -51.93 -0.33 1.49 16 35 H 0.03 0.73 6.46 -51.93 -0.34 0.39 16 36 H 0.01 0.19 6.59 -51.93 -0.34 -0.15 16 37 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.03 0.69 6.60 -51.93 -0.34 0.35 16 40 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 41 H 0.07 1.00 6.11 -51.93 -0.32 0.68 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -28.21 306.43 -9.07 -37.29 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.28 Total: -1.28 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -1.48 Total: -47.14 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.21 -9.07 -37.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055066570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.355 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds