Wall clock time and date at job start Mon Mar 30 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47265 * 2 1 4 4 H 1.09002 * 109.47121 * 57.12152 * 3 2 1 5 5 C 1.53002 * 109.47253 * 297.11741 * 3 2 1 6 6 N 1.46905 * 109.47134 * 177.11687 * 3 2 1 7 7 C 1.46953 * 110.99894 * 302.76051 * 6 3 2 8 8 C 1.53052 * 109.36515 * 176.81147 * 7 6 3 9 9 N 1.46958 * 109.36513 * 58.39883 * 8 7 6 10 10 C 1.46896 * 111.00284 * 176.81372 * 9 8 7 11 11 H 1.09001 * 109.47180 * 178.79851 * 10 9 8 12 12 C 1.53003 * 109.46988 * 58.79795 * 10 9 8 13 13 C 1.50700 * 109.46895 * 298.80376 * 10 9 8 14 14 H 1.07993 * 119.99965 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99840 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00088 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99921 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47166 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46981 * 119.99986 * 17 15 13 20 20 H 1.48500 * 109.47262 * 239.99674 * 17 15 13 21 21 C 1.46960 * 110.88057 * 300.68449 * 9 8 7 22 22 C 1.46958 * 110.99776 * 178.95823 * 6 3 2 23 23 H 1.08999 * 109.47385 * 67.07338 * 1 2 3 24 24 H 1.09002 * 109.47296 * 187.07559 * 1 2 3 25 25 H 1.09000 * 109.46677 * 307.07454 * 1 2 3 26 26 H 1.09004 * 109.46826 * 240.00227 * 2 1 3 27 27 H 1.09002 * 109.47186 * 120.00821 * 2 1 3 28 28 H 1.08996 * 109.46797 * 299.99919 * 5 3 2 29 29 H 1.08997 * 109.47204 * 60.00113 * 5 3 2 30 30 H 1.09001 * 109.46676 * 180.02562 * 5 3 2 31 31 H 1.08998 * 109.49029 * 296.77569 * 7 6 3 32 32 H 1.08998 * 109.49015 * 56.84133 * 7 6 3 33 33 H 1.09002 * 109.48596 * 298.43701 * 8 7 6 34 34 H 1.08995 * 109.49448 * 178.36900 * 8 7 6 35 35 H 1.09001 * 109.47206 * 300.00040 * 12 10 9 36 36 H 1.09000 * 109.46873 * 60.00600 * 12 10 9 37 37 H 1.09000 * 109.46901 * 179.97438 * 12 10 9 38 38 H 0.97000 * 120.00424 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.48437 * 299.34906 * 21 9 8 40 40 H 1.08998 * 109.48909 * 179.28858 * 21 9 8 41 41 H 1.08995 * 109.49048 * 303.15237 * 22 6 3 42 42 H 1.09002 * 109.48681 * 63.22659 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6352 1.9710 0.8631 5 6 1.5902 2.1425 -1.2839 6 7 3.5074 1.4430 0.0697 7 6 3.9784 0.7202 1.2593 8 6 5.5083 0.6751 1.2532 9 7 6.0361 2.0464 1.2302 10 6 7.5034 2.0470 1.2999 11 1 7.8687 3.0732 1.2597 12 6 8.0704 1.2573 0.1184 13 6 7.9453 1.4065 2.5905 14 1 7.2097 1.0365 3.2892 15 6 9.2887 1.2939 2.8796 16 7 10.1845 1.7450 2.0289 17 14 9.8364 0.5007 4.4797 18 1 8.6434 0.0787 5.2568 19 1 10.6774 -0.6863 4.1812 20 1 10.6240 1.4784 5.2728 21 6 5.5650 2.7692 0.0405 22 6 4.0352 2.8143 0.0467 23 1 -0.3634 0.4003 -0.9465 24 1 -0.3634 -1.0198 0.1266 25 1 -0.3633 0.6195 0.8199 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 1.9951 1.6139 -2.1469 29 1 0.5014 2.1421 -1.3356 30 1 1.9540 3.1700 -1.2841 31 1 3.6335 1.2334 2.1569 32 1 3.5846 -0.2960 1.2471 33 1 5.8526 0.1381 0.3693 34 1 5.8607 0.1647 2.1494 35 1 7.7051 0.2310 0.1586 36 1 7.7508 1.7205 -0.8151 37 1 9.1592 1.2581 0.1699 38 1 11.1296 1.6655 2.2321 39 1 5.9101 2.2560 -0.8570 40 1 5.9589 3.7855 0.0528 41 1 3.6828 3.3246 -0.8496 42 1 3.6908 3.3513 0.9306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055066570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:46 Heat of formation + Delta-G solvation = -13.309651 kcal Electronic energy + Delta-G solvation = -18424.902583 eV Core-core repulsion = 15824.937270 eV Total energy + Delta-G solvation = -2599.965313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57662 -38.14255 -35.34400 -33.78506 -32.06455 -30.94756 -29.39923 -27.34567 -26.75023 -24.97345 -23.73814 -22.45245 -20.89327 -20.21799 -18.22484 -17.52830 -16.61654 -16.12401 -15.90864 -15.71722 -15.37639 -15.17954 -14.72287 -14.41886 -14.08097 -13.71810 -13.47425 -13.40673 -12.96936 -12.72851 -12.67786 -12.53683 -12.46209 -12.32593 -12.25869 -12.11552 -11.97306 -11.83766 -11.51610 -11.27976 -11.09917 -10.82080 -10.49418 -9.25443 -8.84201 -8.10769 -6.21805 1.41424 1.43103 1.54964 2.43039 2.93607 3.18332 3.38058 3.90742 4.02089 4.05136 4.24001 4.40807 4.43740 4.46712 4.51426 4.58737 4.64698 4.72299 4.74791 4.78265 4.85033 4.90700 4.95010 5.05099 5.06290 5.13231 5.17790 5.20290 5.22830 5.27603 5.46047 5.48641 5.53131 5.70457 5.78989 6.11874 6.21530 6.24546 6.50478 6.75377 6.91832 7.47528 8.95818 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040434 B = 0.005537 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.328354 B = 5055.797031 C = 5481.330008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.033 0.967 5 C -0.142 4.142 6 N -0.542 5.542 7 C 0.066 3.934 8 C 0.070 3.930 9 N -0.543 5.543 10 C 0.215 3.785 11 H 0.005 0.995 12 C -0.153 4.153 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.960 3.040 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.281 1.281 21 C 0.054 3.946 22 C 0.068 3.932 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.023 0.977 37 H 0.061 0.939 38 H 0.261 0.739 39 H 0.027 0.973 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.389 -1.633 -5.122 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.029 4.029 4 H 0.051 0.949 5 C -0.199 4.199 6 N -0.267 5.267 7 C -0.062 4.062 8 C -0.058 4.058 9 N -0.267 5.267 10 C 0.107 3.893 11 H 0.023 0.977 12 C -0.212 4.212 13 C -0.552 4.552 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.561 5.561 17 Si 0.786 3.214 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.074 4.074 22 C -0.060 4.060 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.214 -1.604 -5.136 18.035 hybrid contribution 1.049 -0.216 0.797 1.335 sum -16.165 -1.819 -4.339 16.836 Atomic orbital electron populations 1.21759 0.94057 1.02178 1.02293 1.21615 0.96750 0.95033 1.02174 1.21756 0.85826 0.97243 0.98093 0.94870 1.21895 1.01712 0.99938 0.96349 1.62228 1.09684 1.15217 1.39614 1.22160 0.94008 0.99229 0.90844 1.21942 0.93879 0.90151 0.99870 1.62414 1.10884 1.15293 1.38137 1.19048 0.82383 0.94198 0.93638 0.97721 1.22150 1.03224 0.98668 0.97202 1.21382 0.91684 1.38348 1.03771 0.92610 1.25701 0.96737 0.96235 1.00059 1.70024 1.01229 1.47867 1.37011 0.85473 0.78163 0.78053 0.79723 1.19225 1.20625 1.20708 1.22126 0.95333 0.98192 0.91775 1.22120 0.93297 0.89576 1.01017 0.91647 0.91968 0.92755 0.91683 0.92388 0.92299 0.90348 0.92627 0.95370 0.88972 0.95937 0.91712 0.95250 0.95850 0.92059 0.92983 0.95508 0.91608 0.88481 0.95165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.43 71.98 0.68 -1.49 16 2 C -0.12 -2.34 5.20 30.59 0.16 -2.18 16 3 C 0.08 1.78 2.16 44.91 0.10 1.87 16 4 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 5 C -0.14 -2.64 8.65 71.98 0.62 -2.01 16 6 N -0.54 -15.84 4.58 -870.48 -3.99 -19.82 16 7 C 0.07 2.12 5.26 86.31 0.45 2.57 16 8 C 0.07 2.84 4.86 86.31 0.42 3.26 16 9 N -0.54 -24.20 4.69 -874.86 -4.10 -28.30 16 10 C 0.21 11.25 2.35 44.17 0.10 11.35 16 11 H 0.00 0.28 8.11 -2.39 -0.02 0.27 16 12 C -0.15 -7.74 8.27 71.98 0.60 -7.14 16 13 C -0.51 -28.77 7.90 25.60 0.20 -28.57 16 14 H 0.06 3.13 6.77 -2.91 -0.02 3.11 16 15 C 0.01 0.62 5.30 84.66 0.45 1.07 16 16 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 17 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 C 0.05 2.05 5.25 86.31 0.45 2.51 16 22 C 0.07 2.06 5.29 86.31 0.46 2.52 16 23 H 0.06 0.86 6.88 -2.39 -0.02 0.84 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.06 1.22 6.13 -2.39 -0.01 1.21 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.15 6.67 -2.39 -0.02 1.13 16 30 H 0.05 1.03 6.32 -2.39 -0.02 1.02 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 2.60 6.02 -2.39 -0.01 2.59 16 33 H 0.02 0.96 6.46 -2.39 -0.02 0.94 16 34 H 0.06 2.85 6.45 -2.39 -0.02 2.83 16 35 H 0.03 1.44 6.46 -2.39 -0.02 1.42 16 36 H 0.02 1.06 6.59 -2.39 -0.02 1.05 16 37 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 38 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.03 1.05 6.60 -2.39 -0.02 1.04 16 40 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 41 H 0.10 2.47 6.11 -2.39 -0.01 2.45 16 42 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -60.58 306.43 -0.16 -60.74 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.97 Total: 10.86 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.69 Total: -16.25 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -7.85 Total: -101.60 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.58 -0.16 -60.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055066570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.429 kcal (2) G-P(sol) polarization free energy of solvation -60.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds