Wall clock time and date at job start Mon Mar 30 2020 04:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47025 * 2 1 4 4 N 1.46897 * 109.46956 * 120.00185 * 2 1 3 5 5 C 1.46909 * 110.99859 * 155.00231 * 4 2 1 6 6 C 1.53002 * 109.46822 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.50322 * 55.07969 * 6 5 4 8 8 C 1.53118 * 109.50501 * 294.99875 * 6 5 4 9 9 C 1.53115 * 109.16177 * 182.40825 * 8 6 5 10 10 C 1.53039 * 109.27819 * 57.65187 * 9 8 6 11 11 N 1.46840 * 109.52528 * 300.81928 * 10 9 8 12 12 C 1.46895 * 111.00229 * 185.83875 * 11 10 9 13 13 C 1.50706 * 109.47182 * 66.04782 * 12 11 10 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00102 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 C 1.46848 * 111.19623 * 61.74209 * 11 10 9 22 22 H 1.08998 * 109.47405 * 299.99463 * 1 2 3 23 23 H 1.08998 * 109.46826 * 60.00363 * 1 2 3 24 24 H 1.09001 * 109.46896 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47172 * 239.99794 * 2 1 3 26 26 H 1.09007 * 109.46923 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47569 * 300.00048 * 3 2 1 28 28 H 1.09003 * 109.46989 * 60.00282 * 3 2 1 29 29 H 1.00900 * 110.99885 * 278.94912 * 4 2 1 30 30 H 1.08993 * 109.47413 * 59.99775 * 5 4 2 31 31 H 1.09000 * 109.46691 * 299.99261 * 5 4 2 32 32 H 1.08992 * 109.52592 * 62.49933 * 8 6 5 33 33 H 1.08998 * 109.51995 * 302.31209 * 8 6 5 34 34 H 1.08995 * 109.50368 * 297.71167 * 9 8 6 35 35 H 1.08999 * 109.53573 * 177.61444 * 9 8 6 36 36 H 1.09009 * 109.45752 * 180.80365 * 10 9 8 37 37 H 1.08995 * 109.45347 * 60.83806 * 10 9 8 38 38 H 1.09001 * 109.47613 * 306.05128 * 12 11 10 39 39 H 1.09006 * 109.47521 * 186.04746 * 12 11 10 40 40 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 41 41 H 1.08998 * 109.46004 * 58.27805 * 21 11 10 42 42 H 1.09000 * 109.46139 * 178.23846 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3671 -1.2355 0.9806 6 6 3.8422 -1.9472 2.2490 7 1 3.1119 -2.7033 2.5372 8 6 3.9957 -0.9272 3.3806 9 6 4.5286 -1.6370 4.6282 10 6 5.8598 -2.3141 4.2944 11 7 5.6598 -3.2808 3.2073 12 6 6.8859 -4.0491 2.9537 13 6 7.1937 -4.9130 4.1495 14 1 6.5433 -4.8936 5.0115 15 6 8.3056 -5.7282 4.1431 16 7 9.0980 -5.7514 3.0937 17 14 8.6875 -6.7985 5.6257 18 1 9.5517 -6.0459 6.5702 19 1 7.4213 -7.1737 6.3047 20 1 9.3934 -8.0270 5.1806 21 6 5.1933 -2.6153 1.9842 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9562 0.8900 29 1 2.0020 -0.0816 2.0022 30 1 4.0523 -0.4220 0.7425 31 1 3.3431 -1.9445 0.1531 32 1 3.0267 -0.4800 3.6018 33 1 4.6961 -0.1491 3.0770 34 1 3.8097 -2.3886 4.9542 35 1 4.6803 -0.9089 5.4250 36 1 6.2349 -2.8325 5.1770 37 1 6.5822 -1.5602 3.9818 38 1 7.7147 -3.3632 2.7780 39 1 6.7443 -4.6802 2.0763 40 1 8.8998 -5.1953 2.3240 41 1 5.9190 -1.8601 1.6823 42 1 5.0843 -3.3525 1.1887 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063139776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:36 Heat of formation + Delta-G solvation = -24.797526 kcal Electronic energy + Delta-G solvation = -17755.455913 eV Core-core repulsion = 15154.992448 eV Total energy + Delta-G solvation = -2600.463465 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.91411 -37.17165 -34.17618 -32.52265 -31.46429 -29.54894 -27.34365 -26.48556 -24.86483 -23.26769 -22.10418 -20.87411 -20.58497 -19.22038 -16.69249 -15.89067 -15.50001 -15.11647 -14.43452 -14.10378 -13.87884 -13.70166 -13.50833 -13.38829 -13.27787 -12.54550 -12.47749 -12.17455 -12.00565 -11.69450 -11.44793 -11.41159 -11.12554 -10.95641 -10.77713 -10.65940 -10.59655 -10.32652 -10.08436 -9.89867 -9.71202 -8.62299 -8.46911 -8.34857 -7.26725 -6.34352 -4.02763 3.45493 3.50179 3.66007 4.03326 4.54563 4.67532 4.81607 4.92418 5.00008 5.10066 5.16843 5.25983 5.37999 5.41674 5.49775 5.56580 5.59607 5.65100 5.72202 5.83441 5.85645 5.88773 5.94280 6.00891 6.09035 6.17348 6.19036 6.28388 6.44552 6.57203 6.72762 6.74880 7.00738 7.04871 7.14664 7.32346 7.85874 8.05633 8.37071 8.62767 8.90229 9.68081 11.04840 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.049819 B = 0.004269 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.897632 B = 6556.702239 C = 6767.965508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 C -0.183 4.183 4 N -0.684 5.684 5 C 0.065 3.935 6 C -0.081 4.081 7 H 0.086 0.914 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.065 3.935 11 N -0.528 5.528 12 C 0.183 3.817 13 C -0.586 4.586 14 H 0.058 0.942 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 1.075 2.925 18 H -0.289 1.289 19 H -0.287 1.287 20 H -0.285 1.285 21 C 0.062 3.938 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.340 0.660 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.015 0.985 38 H -0.022 1.022 39 H 0.020 0.980 40 H 0.266 0.734 41 H 0.017 0.983 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 13.198 -3.913 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.242 4.242 4 N -0.315 5.315 5 C -0.064 4.064 6 C -0.100 4.100 7 H 0.104 0.896 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.063 4.063 11 N -0.253 5.253 12 C 0.057 3.943 13 C -0.625 4.625 14 H 0.076 0.924 15 C -0.191 4.191 16 N -0.553 5.553 17 Si 0.903 3.097 18 H -0.216 1.216 19 H -0.213 1.213 20 H -0.210 1.210 21 C -0.067 4.067 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.159 0.841 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.033 0.967 38 H -0.004 1.004 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.035 0.965 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.366 11.149 -3.324 17.721 hybrid contribution 0.185 2.615 -0.960 2.792 sum -13.182 13.765 -4.284 19.534 Atomic orbital electron populations 1.21760 0.94511 1.02284 1.01116 1.21563 0.95761 0.92238 0.93853 1.22519 1.01348 0.98093 1.02220 1.60636 1.24865 1.40519 1.05491 1.22004 0.88202 0.97752 0.98461 1.21187 0.97700 0.97522 0.93627 0.89561 1.21606 0.99908 0.97515 0.95965 1.21601 0.98288 0.98997 0.96488 1.21937 0.94517 0.93263 0.96582 1.61891 1.34814 1.23863 1.04684 1.19814 0.84563 0.92024 0.97891 1.22007 1.11969 1.26197 1.02321 0.92410 1.25858 0.93035 0.97721 1.02446 1.70767 1.38809 1.39984 1.05722 0.83461 0.75676 0.76206 0.74348 1.21578 1.21340 1.21045 1.21994 0.94377 0.96434 0.93926 0.92839 0.92763 0.91956 0.90642 0.92778 0.92192 0.92521 0.84120 0.95554 0.91063 0.92451 0.93114 0.91321 0.92475 0.89854 0.96681 1.00400 0.96241 0.92347 0.96464 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.52 37.16 0.35 -0.82 16 2 C 0.08 0.72 3.20 -67.72 -0.22 0.50 16 3 C -0.18 -1.53 9.16 37.15 0.34 -1.19 16 4 N -0.68 -7.61 6.25 -106.73 -0.67 -8.28 16 5 C 0.07 0.82 4.95 -3.82 -0.02 0.80 16 6 C -0.08 -1.21 2.56 -90.54 -0.23 -1.44 16 7 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 8 C -0.11 -1.55 5.00 -26.61 -0.13 -1.69 16 9 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 10 C 0.07 1.31 5.30 -3.84 -0.02 1.29 16 11 N -0.53 -11.76 4.65 -236.11 -1.10 -12.85 16 12 C 0.18 4.86 4.03 -4.98 -0.02 4.84 16 13 C -0.59 -16.93 8.43 -34.44 -0.29 -17.22 16 14 H 0.06 1.67 7.14 -52.48 -0.37 1.29 16 15 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 16 N -0.92 -28.33 13.65 55.43 0.76 -27.57 16 17 Si 1.07 25.68 29.90 -169.99 -5.08 20.60 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 C 0.06 1.15 4.74 -3.83 -0.02 1.13 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.74 7.80 -51.93 -0.40 0.34 16 26 H 0.05 0.49 7.45 -51.92 -0.39 0.10 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.34 3.58 6.78 -39.29 -0.27 3.32 16 30 H 0.03 0.33 7.43 -51.93 -0.39 -0.06 16 31 H 0.07 0.91 8.06 -51.93 -0.42 0.50 16 32 H 0.06 0.68 6.80 -51.93 -0.35 0.33 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.84 6.72 -51.92 -0.35 1.49 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 38 H -0.02 -0.61 7.99 -51.93 -0.41 -1.02 16 39 H 0.02 0.55 7.85 -51.93 -0.41 0.14 16 40 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -30.38 323.00 -9.66 -40.04 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.92 Total: -1.28 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -0.51 Total: -15.52 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -1.01 Total: -48.70 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.38 -9.66 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063139776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.242 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds