Wall clock time and date at job start Mon Mar 30 2020 04:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47025 * 2 1 4 4 N 1.46897 * 109.46956 * 120.00185 * 2 1 3 5 5 C 1.46909 * 110.99859 * 155.00231 * 4 2 1 6 6 C 1.53002 * 109.46822 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.50322 * 55.07969 * 6 5 4 8 8 C 1.53118 * 109.50501 * 294.99875 * 6 5 4 9 9 C 1.53115 * 109.16177 * 182.40825 * 8 6 5 10 10 C 1.53039 * 109.27819 * 57.65187 * 9 8 6 11 11 N 1.46840 * 109.52528 * 300.81928 * 10 9 8 12 12 C 1.46895 * 111.00229 * 185.83875 * 11 10 9 13 13 C 1.50706 * 109.47182 * 66.04782 * 12 11 10 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00102 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 C 1.46848 * 111.19623 * 61.74209 * 11 10 9 22 22 H 1.08998 * 109.47405 * 299.99463 * 1 2 3 23 23 H 1.08998 * 109.46826 * 60.00363 * 1 2 3 24 24 H 1.09001 * 109.46896 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47172 * 239.99794 * 2 1 3 26 26 H 1.09007 * 109.46923 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47569 * 300.00048 * 3 2 1 28 28 H 1.09003 * 109.46989 * 60.00282 * 3 2 1 29 29 H 1.00900 * 110.99885 * 278.94912 * 4 2 1 30 30 H 1.08993 * 109.47413 * 59.99775 * 5 4 2 31 31 H 1.09000 * 109.46691 * 299.99261 * 5 4 2 32 32 H 1.08992 * 109.52592 * 62.49933 * 8 6 5 33 33 H 1.08998 * 109.51995 * 302.31209 * 8 6 5 34 34 H 1.08995 * 109.50368 * 297.71167 * 9 8 6 35 35 H 1.08999 * 109.53573 * 177.61444 * 9 8 6 36 36 H 1.09009 * 109.45752 * 180.80365 * 10 9 8 37 37 H 1.08995 * 109.45347 * 60.83806 * 10 9 8 38 38 H 1.09001 * 109.47613 * 306.05128 * 12 11 10 39 39 H 1.09006 * 109.47521 * 186.04746 * 12 11 10 40 40 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 41 41 H 1.08998 * 109.46004 * 58.27805 * 21 11 10 42 42 H 1.09000 * 109.46139 * 178.23846 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3671 -1.2355 0.9806 6 6 3.8422 -1.9472 2.2490 7 1 3.1119 -2.7033 2.5372 8 6 3.9957 -0.9272 3.3806 9 6 4.5286 -1.6370 4.6282 10 6 5.8598 -2.3141 4.2944 11 7 5.6598 -3.2808 3.2073 12 6 6.8859 -4.0491 2.9537 13 6 7.1937 -4.9130 4.1495 14 1 6.5433 -4.8936 5.0115 15 6 8.3056 -5.7282 4.1431 16 7 9.0980 -5.7514 3.0937 17 14 8.6875 -6.7985 5.6257 18 1 9.5517 -6.0459 6.5702 19 1 7.4213 -7.1737 6.3047 20 1 9.3934 -8.0270 5.1806 21 6 5.1933 -2.6153 1.9842 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9562 0.8900 29 1 2.0020 -0.0816 2.0022 30 1 4.0523 -0.4220 0.7425 31 1 3.3431 -1.9445 0.1531 32 1 3.0267 -0.4800 3.6018 33 1 4.6961 -0.1491 3.0770 34 1 3.8097 -2.3886 4.9542 35 1 4.6803 -0.9089 5.4250 36 1 6.2349 -2.8325 5.1770 37 1 6.5822 -1.5602 3.9818 38 1 7.7147 -3.3632 2.7780 39 1 6.7443 -4.6802 2.0763 40 1 8.8998 -5.1953 2.3240 41 1 5.9190 -1.8601 1.6823 42 1 5.0843 -3.3525 1.1887 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063139776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:35 Heat of formation + Delta-G solvation = -45.202093 kcal Electronic energy + Delta-G solvation = -17756.340721 eV Core-core repulsion = 15154.992448 eV Total energy + Delta-G solvation = -2601.348273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29342 -38.23185 -35.90609 -34.20816 -32.91100 -30.70190 -28.47039 -27.98763 -26.18673 -25.06757 -23.68380 -22.14882 -21.64859 -20.58888 -18.87303 -17.08685 -16.74212 -16.19668 -15.84721 -15.64474 -15.48666 -15.09648 -14.92954 -14.52818 -14.41339 -13.88342 -13.65295 -13.50311 -13.14345 -13.10413 -12.99664 -12.71561 -12.44900 -12.28180 -12.13720 -12.03433 -11.92176 -11.79011 -11.61293 -11.31546 -11.14100 -10.71489 -10.59253 -9.33806 -9.12706 -8.70495 -6.41099 1.52264 1.62023 1.80594 2.54609 2.98696 3.12619 3.36503 3.76429 3.87553 3.95838 4.03963 4.20725 4.27751 4.35504 4.42331 4.46443 4.49110 4.59109 4.64049 4.69321 4.74415 4.77501 4.91529 4.92944 4.95341 4.99165 5.05654 5.07257 5.13036 5.22425 5.26256 5.32585 5.42130 5.49437 5.77888 5.97883 6.11637 6.38662 6.40878 6.51150 6.63439 7.39866 8.68101 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.049819 B = 0.004269 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.897632 B = 6556.702239 C = 6767.965508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.073 3.927 3 C -0.178 4.178 4 N -0.688 5.688 5 C 0.077 3.923 6 C -0.070 4.070 7 H 0.073 0.927 8 C -0.106 4.106 9 C -0.107 4.107 10 C 0.064 3.936 11 N -0.538 5.538 12 C 0.193 3.807 13 C -0.598 4.598 14 H 0.055 0.945 15 C -0.039 4.039 16 N -0.938 5.938 17 Si 1.125 2.875 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.282 1.282 21 C 0.061 3.939 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.345 0.655 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.009 0.991 38 H -0.047 1.047 39 H -0.003 1.003 40 H 0.252 0.748 41 H 0.015 0.985 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.417 14.526 -3.011 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.036 4.036 3 C -0.237 4.237 4 N -0.320 5.320 5 C -0.053 4.053 6 C -0.089 4.089 7 H 0.092 0.908 8 C -0.143 4.143 9 C -0.145 4.145 10 C -0.064 4.064 11 N -0.262 5.262 12 C 0.066 3.934 13 C -0.636 4.636 14 H 0.073 0.927 15 C -0.236 4.236 16 N -0.576 5.576 17 Si 0.946 3.054 18 H -0.197 1.197 19 H -0.194 1.194 20 H -0.207 1.207 21 C -0.068 4.068 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.165 0.835 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.027 0.973 38 H -0.029 1.029 39 H 0.015 0.985 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.045 12.515 -2.434 19.720 hybrid contribution 0.669 2.237 -1.299 2.672 sum -14.376 14.752 -3.732 20.934 Atomic orbital electron populations 1.21726 0.93573 1.01908 1.02056 1.21628 0.96432 0.92743 0.92823 1.22457 1.00754 0.97313 1.03134 1.60610 1.23595 1.41274 1.06505 1.21791 0.89234 0.97576 0.96734 1.21052 0.94759 0.97553 0.95526 0.90811 1.21585 1.01575 0.96940 0.94219 1.21555 0.95296 0.99278 0.98331 1.21990 0.97244 0.92508 0.94683 1.61852 1.32140 1.25336 1.06859 1.19533 0.85811 0.91684 0.96351 1.22302 1.12052 1.26474 1.02779 0.92667 1.27487 0.92824 0.98836 1.04413 1.70902 1.39796 1.40681 1.06198 0.82838 0.76595 0.74681 0.71326 1.19672 1.19419 1.20719 1.22090 0.96417 0.96145 0.92156 0.92421 0.91320 0.92983 0.91267 0.93595 0.91086 0.91842 0.83481 0.95088 0.91670 0.89353 0.92524 0.91727 0.89740 0.92381 0.97273 1.02923 0.98488 0.93861 0.96639 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.52 71.98 0.69 -1.28 16 2 C 0.07 1.23 3.20 44.91 0.14 1.37 16 3 C -0.18 -2.52 9.16 71.98 0.66 -1.86 16 4 N -0.69 -13.73 6.25 -491.57 -3.07 -16.80 16 5 C 0.08 1.80 4.95 86.30 0.43 2.23 16 6 C -0.07 -1.99 2.56 -10.74 -0.03 -2.02 16 7 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 8 C -0.11 -2.64 5.00 30.67 0.15 -2.48 16 9 C -0.11 -3.16 6.09 30.65 0.19 -2.98 16 10 C 0.06 2.58 5.30 86.33 0.46 3.04 16 11 N -0.54 -24.50 4.65 -900.93 -4.19 -28.68 16 12 C 0.19 10.74 4.03 85.56 0.35 11.08 16 13 C -0.60 -35.38 8.43 25.60 0.22 -35.17 16 14 H 0.06 3.23 7.14 -2.91 -0.02 3.21 16 15 C -0.04 -2.29 5.46 84.65 0.46 -1.83 16 16 N -0.94 -59.44 13.65 21.45 0.29 -59.15 16 17 Si 1.13 51.44 29.90 68.60 2.05 53.49 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 C 0.06 2.27 4.74 86.33 0.41 2.68 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 26 H 0.04 0.73 7.45 -2.38 -0.02 0.71 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.35 6.17 6.78 -89.69 -0.61 5.57 16 30 H 0.03 0.71 7.43 -2.39 -0.02 0.69 16 31 H 0.06 1.62 8.06 -2.39 -0.02 1.60 16 32 H 0.09 1.74 6.80 -2.39 -0.02 1.72 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 2.60 6.72 -2.38 -0.02 2.59 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H -0.05 -2.78 7.99 -2.39 -0.02 -2.80 16 39 H 0.00 -0.17 7.85 -2.38 -0.02 -0.19 16 40 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 41 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.06 2.19 8.01 -2.39 -0.02 2.17 16 Total: -1.00 -66.86 323.00 -0.35 -67.21 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.45 Total: 11.15 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: 4.12 Total: -27.22 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -6.96 Total: -104.64 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.49 kcal Total: -66.86 -0.35 -67.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063139776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.006 kcal (2) G-P(sol) polarization free energy of solvation -66.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds