Wall clock time and date at job start Mon Mar 30 2020 04:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46770 * 2 1 4 4 N 1.46893 * 109.47048 * 239.99769 * 2 1 3 5 5 C 1.46905 * 111.00047 * 274.99701 * 4 2 1 6 6 C 1.53001 * 109.47133 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.50445 * 305.08181 * 6 5 4 8 8 C 1.53123 * 109.50052 * 65.19918 * 6 5 4 9 9 C 1.53121 * 109.15564 * 177.59198 * 8 6 5 10 10 C 1.53027 * 109.28164 * 302.34523 * 9 8 6 11 11 N 1.46852 * 109.52547 * 59.18244 * 10 9 8 12 12 C 1.46891 * 111.00190 * 174.15966 * 11 10 9 13 13 C 1.50703 * 109.47302 * 59.33309 * 12 11 10 14 14 H 1.07998 * 119.99749 * 5.00558 * 13 12 11 15 15 C 1.37874 * 120.00149 * 185.00676 * 13 12 11 16 16 N 1.31516 * 119.99929 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00102 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46791 * 89.99968 * 17 15 13 19 19 H 1.48496 * 109.47307 * 210.00112 * 17 15 13 20 20 H 1.48499 * 109.46880 * 330.00152 * 17 15 13 21 21 C 1.46848 * 111.19524 * 298.25703 * 11 10 9 22 22 H 1.09004 * 109.46955 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47405 * 300.00329 * 1 2 3 24 24 H 1.09004 * 109.46549 * 60.00202 * 1 2 3 25 25 H 1.09003 * 109.46501 * 119.99244 * 2 1 3 26 26 H 1.08993 * 109.47426 * 59.99683 * 3 2 1 27 27 H 1.09001 * 109.46811 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47116 * 299.99714 * 3 2 1 29 29 H 1.00894 * 111.00509 * 38.95536 * 4 2 1 30 30 H 1.09001 * 109.47251 * 300.00707 * 5 4 2 31 31 H 1.08995 * 109.46866 * 60.00227 * 5 4 2 32 32 H 1.09004 * 109.52498 * 297.49769 * 8 6 5 33 33 H 1.08997 * 109.52344 * 57.69090 * 8 6 5 34 34 H 1.09006 * 109.50204 * 182.40109 * 9 8 6 35 35 H 1.09006 * 109.53405 * 62.31049 * 9 8 6 36 36 H 1.08996 * 109.46693 * 299.16564 * 10 9 8 37 37 H 1.08999 * 109.45450 * 179.19157 * 10 9 8 38 38 H 1.09000 * 109.47036 * 179.33223 * 12 11 10 39 39 H 1.08996 * 109.47742 * 299.33172 * 12 11 10 40 40 H 0.96998 * 119.99707 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.46572 * 301.72686 * 21 11 10 42 42 H 1.08993 * 109.46550 * 181.75473 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 -2.1438 -0.9805 6 6 2.5963 -2.8290 -2.2484 7 1 1.9723 -2.5429 -3.0950 8 6 4.0428 -2.4005 -2.5106 9 6 4.5687 -3.1365 -3.7461 10 6 4.4596 -4.6460 -3.5197 11 7 3.0571 -5.0053 -3.2740 12 6 2.8941 -6.4627 -3.1896 13 6 3.7477 -6.9997 -2.0697 14 1 4.2878 -6.3190 -1.4284 15 6 3.8392 -8.3599 -1.8639 16 7 4.5837 -8.8284 -0.8863 17 14 2.9044 -9.5373 -2.9728 18 1 3.7557 -9.9063 -4.1323 19 1 2.5505 -10.7608 -2.2093 20 1 1.6642 -8.8806 -3.4583 21 6 2.5444 -4.3475 -2.0653 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8933 -0.5137 0.8901 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.4497 -0.4723 -2.0022 30 1 2.7589 -2.3575 -0.1528 31 1 1.0872 -2.5187 -0.7424 32 1 4.0784 -1.3251 -2.6846 33 1 4.6592 -2.6514 -1.6474 34 1 5.6119 -2.8679 -3.9130 35 1 3.9768 -2.8554 -4.6172 36 1 5.0633 -4.9285 -2.6573 37 1 4.8200 -5.1726 -4.4034 38 1 1.8482 -6.7007 -2.9954 39 1 3.2015 -6.9179 -4.1310 40 1 4.6478 -9.7854 -0.7413 41 1 3.1571 -4.6313 -1.2097 42 1 1.5138 -4.6574 -1.8926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063139778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:39 Heat of formation + Delta-G solvation = -19.149323 kcal Electronic energy + Delta-G solvation = -17927.292950 eV Core-core repulsion = 15327.074410 eV Total energy + Delta-G solvation = -2600.218541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.74484 -37.11262 -33.98743 -32.33605 -31.44113 -29.43409 -27.29265 -27.21818 -24.51931 -23.49234 -21.60651 -20.92779 -20.28119 -18.99010 -16.76428 -15.63641 -15.42615 -14.77866 -14.56259 -14.13444 -14.05282 -13.71190 -13.38161 -13.04789 -12.90320 -12.54162 -12.40120 -12.14327 -11.87971 -11.59759 -11.53242 -11.29905 -11.07578 -10.94332 -10.88451 -10.47642 -10.32790 -10.25430 -9.96183 -9.71115 -9.66586 -9.37158 -8.58371 -8.34220 -7.13707 -6.09654 -4.09093 3.28130 3.35702 3.40005 4.14069 4.40511 4.76798 4.94445 5.00787 5.14586 5.24233 5.27537 5.35937 5.46107 5.49841 5.64062 5.67628 5.73089 5.74007 5.88247 5.97651 6.01143 6.06406 6.16605 6.18321 6.25208 6.38084 6.53306 6.55824 6.60970 6.80727 6.84150 6.97527 7.02343 7.08794 7.11866 7.42921 7.59339 8.11720 8.19170 8.46719 8.93433 9.53718 11.03405 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.005051 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.482144 B = 5542.539636 C = 5881.740103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.076 3.924 3 C -0.138 4.138 4 N -0.682 5.682 5 C 0.064 3.936 6 C -0.080 4.080 7 H 0.068 0.932 8 C -0.101 4.101 9 C -0.118 4.118 10 C 0.062 3.938 11 N -0.534 5.534 12 C 0.154 3.846 13 C -0.550 4.550 14 H 0.075 0.925 15 C 0.071 3.929 16 N -0.900 5.900 17 Si 0.879 3.121 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.069 3.931 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.338 0.662 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.042 0.958 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 16.641 -0.881 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.034 4.034 3 C -0.196 4.196 4 N -0.312 5.312 5 C -0.065 4.065 6 C -0.100 4.100 7 H 0.087 0.913 8 C -0.139 4.139 9 C -0.156 4.156 10 C -0.067 4.067 11 N -0.257 5.257 12 C 0.027 3.973 13 C -0.588 4.588 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.060 4.060 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.347 16.730 -1.042 17.594 hybrid contribution -0.914 -1.441 0.265 1.727 sum -6.261 15.288 -0.777 16.539 Atomic orbital electron populations 1.22520 0.97600 1.01939 1.02109 1.21555 0.92348 0.95523 0.93959 1.21756 1.01762 0.95061 1.01027 1.60598 1.57018 1.08304 1.05323 1.22020 0.99199 0.86564 0.98731 1.21191 0.97144 0.95249 0.96387 0.91327 1.21454 0.95224 0.99502 0.97682 1.21648 0.99746 0.96032 0.98184 1.21881 0.90345 0.93722 1.00706 1.62329 1.17972 1.10177 1.35266 1.20158 0.96784 0.83952 0.96375 1.21711 1.29120 0.92899 1.15089 0.90751 1.24977 0.94728 0.98373 0.95022 1.69932 1.39460 1.13596 1.30855 0.86793 0.81086 0.80618 0.80888 1.20189 1.21350 1.18901 1.21844 0.99694 0.91483 0.92999 0.92659 0.92299 0.92565 0.90642 0.92853 0.92041 0.92894 0.84401 0.91092 0.95320 0.91726 0.92804 0.92631 0.92196 0.93858 0.92055 0.95626 0.95705 0.92726 0.93993 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.16 37.16 0.34 -1.29 16 2 C 0.08 0.76 3.20 -67.71 -0.22 0.55 16 3 C -0.14 -1.22 9.52 37.16 0.35 -0.87 16 4 N -0.68 -7.79 5.76 -106.72 -0.61 -8.40 16 5 C 0.06 0.86 4.88 -3.82 -0.02 0.84 16 6 C -0.08 -1.23 2.49 -90.53 -0.23 -1.45 16 7 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 8 C -0.10 -1.54 5.14 -26.60 -0.14 -1.67 16 9 C -0.12 -1.89 6.09 -26.65 -0.16 -2.05 16 10 C 0.06 1.23 5.03 -3.84 -0.02 1.21 16 11 N -0.53 -11.31 4.86 -236.13 -1.15 -12.46 16 12 C 0.15 3.77 4.19 -4.98 -0.02 3.74 16 13 C -0.55 -15.41 8.27 -34.44 -0.28 -15.70 16 14 H 0.07 2.27 6.10 -52.49 -0.32 1.95 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 17 Si 0.88 21.59 27.37 -169.99 -4.65 16.93 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.26 -6.27 6.69 56.52 0.38 -5.89 16 21 C 0.07 1.33 4.40 -3.83 -0.02 1.31 16 22 H 0.05 0.54 7.45 -51.93 -0.39 0.15 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 25 H 0.08 0.81 7.80 -51.93 -0.41 0.40 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.34 3.61 8.47 -39.29 -0.33 3.28 16 30 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 31 H 0.03 0.38 7.43 -51.93 -0.39 -0.01 16 32 H 0.06 0.91 7.84 -51.93 -0.41 0.50 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.98 6.73 -51.93 -0.35 0.63 16 37 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 38 H 0.03 0.63 7.49 -51.93 -0.39 0.25 16 39 H 0.02 0.61 7.29 -51.93 -0.38 0.23 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.04 0.92 6.86 -51.93 -0.36 0.56 16 42 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -29.30 319.99 -9.26 -38.56 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.93 Total: 0.74 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.51 Total: -13.42 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.99 Total: -47.64 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.65 Total: 16.93 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.30 -9.26 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063139778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.410 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds