Wall clock time and date at job start Mon Mar 30 2020 04:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46770 * 2 1 4 4 N 1.46893 * 109.47048 * 239.99769 * 2 1 3 5 5 C 1.46905 * 111.00047 * 274.99701 * 4 2 1 6 6 C 1.53001 * 109.47133 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.50445 * 305.08181 * 6 5 4 8 8 C 1.53123 * 109.50052 * 65.19918 * 6 5 4 9 9 C 1.53121 * 109.15564 * 177.59198 * 8 6 5 10 10 C 1.53027 * 109.28164 * 302.34523 * 9 8 6 11 11 N 1.46852 * 109.52547 * 59.18244 * 10 9 8 12 12 C 1.46891 * 111.00190 * 174.15966 * 11 10 9 13 13 C 1.50703 * 109.47302 * 59.33309 * 12 11 10 14 14 H 1.07998 * 119.99749 * 5.00558 * 13 12 11 15 15 C 1.37874 * 120.00149 * 185.00676 * 13 12 11 16 16 N 1.31516 * 119.99929 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00102 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46791 * 89.99968 * 17 15 13 19 19 H 1.48496 * 109.47307 * 210.00112 * 17 15 13 20 20 H 1.48499 * 109.46880 * 330.00152 * 17 15 13 21 21 C 1.46848 * 111.19524 * 298.25703 * 11 10 9 22 22 H 1.09004 * 109.46955 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47405 * 300.00329 * 1 2 3 24 24 H 1.09004 * 109.46549 * 60.00202 * 1 2 3 25 25 H 1.09003 * 109.46501 * 119.99244 * 2 1 3 26 26 H 1.08993 * 109.47426 * 59.99683 * 3 2 1 27 27 H 1.09001 * 109.46811 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47116 * 299.99714 * 3 2 1 29 29 H 1.00894 * 111.00509 * 38.95536 * 4 2 1 30 30 H 1.09001 * 109.47251 * 300.00707 * 5 4 2 31 31 H 1.08995 * 109.46866 * 60.00227 * 5 4 2 32 32 H 1.09004 * 109.52498 * 297.49769 * 8 6 5 33 33 H 1.08997 * 109.52344 * 57.69090 * 8 6 5 34 34 H 1.09006 * 109.50204 * 182.40109 * 9 8 6 35 35 H 1.09006 * 109.53405 * 62.31049 * 9 8 6 36 36 H 1.08996 * 109.46693 * 299.16564 * 10 9 8 37 37 H 1.08999 * 109.45450 * 179.19157 * 10 9 8 38 38 H 1.09000 * 109.47036 * 179.33223 * 12 11 10 39 39 H 1.08996 * 109.47742 * 299.33172 * 12 11 10 40 40 H 0.96998 * 119.99707 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.46572 * 301.72686 * 21 11 10 42 42 H 1.08993 * 109.46550 * 181.75473 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 -2.1438 -0.9805 6 6 2.5963 -2.8290 -2.2484 7 1 1.9723 -2.5429 -3.0950 8 6 4.0428 -2.4005 -2.5106 9 6 4.5687 -3.1365 -3.7461 10 6 4.4596 -4.6460 -3.5197 11 7 3.0571 -5.0053 -3.2740 12 6 2.8941 -6.4627 -3.1896 13 6 3.7477 -6.9997 -2.0697 14 1 4.2878 -6.3190 -1.4284 15 6 3.8392 -8.3599 -1.8639 16 7 4.5837 -8.8284 -0.8863 17 14 2.9044 -9.5373 -2.9728 18 1 3.7557 -9.9063 -4.1323 19 1 2.5505 -10.7608 -2.2093 20 1 1.6642 -8.8806 -3.4583 21 6 2.5444 -4.3475 -2.0653 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8933 -0.5137 0.8901 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.4497 -0.4723 -2.0022 30 1 2.7589 -2.3575 -0.1528 31 1 1.0872 -2.5187 -0.7424 32 1 4.0784 -1.3251 -2.6846 33 1 4.6592 -2.6514 -1.6474 34 1 5.6119 -2.8679 -3.9130 35 1 3.9768 -2.8554 -4.6172 36 1 5.0633 -4.9285 -2.6573 37 1 4.8200 -5.1726 -4.4034 38 1 1.8482 -6.7007 -2.9954 39 1 3.2015 -6.9179 -4.1310 40 1 4.6478 -9.7854 -0.7413 41 1 3.1571 -4.6313 -1.2097 42 1 1.5138 -4.6574 -1.8926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063139778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:38 Heat of formation + Delta-G solvation = -39.357766 kcal Electronic energy + Delta-G solvation = -17928.169254 eV Core-core repulsion = 15327.074410 eV Total energy + Delta-G solvation = -2601.094844 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.18132 -38.18247 -35.60507 -34.15554 -32.92014 -30.63204 -29.19048 -27.95835 -25.84616 -25.22642 -23.15638 -21.96187 -21.65403 -20.55525 -18.84979 -16.98013 -16.55620 -16.26343 -15.82960 -15.63491 -15.54085 -15.14694 -14.70422 -14.45627 -14.20437 -14.07785 -13.52255 -13.34350 -13.13306 -13.00556 -12.90166 -12.77102 -12.45927 -12.16766 -12.04245 -12.01176 -11.87923 -11.77184 -11.69440 -11.42793 -11.11297 -10.96431 -10.80221 -9.27658 -8.98748 -8.33271 -6.38623 1.34452 1.35551 1.48148 2.32563 3.01188 3.09566 3.46479 3.90151 4.00814 4.04252 4.16295 4.25988 4.39187 4.43209 4.53247 4.56606 4.66507 4.76723 4.79900 4.83216 4.91589 4.96028 4.97954 5.01367 5.03719 5.07307 5.11676 5.19620 5.27139 5.28825 5.32804 5.42824 5.45891 5.48511 5.63633 6.09285 6.14386 6.35726 6.46211 6.56983 6.68386 7.28605 8.83253 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.005051 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.482144 B = 5542.539636 C = 5881.740103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 C -0.133 4.133 4 N -0.681 5.681 5 C 0.075 3.925 6 C -0.068 4.068 7 H 0.083 0.917 8 C -0.096 4.096 9 C -0.108 4.108 10 C 0.062 3.938 11 N -0.528 5.528 12 C 0.159 3.841 13 C -0.550 4.550 14 H 0.031 0.969 15 C 0.010 3.990 16 N -0.948 5.948 17 Si 0.951 3.049 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.246 1.246 21 C 0.071 3.929 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.346 0.654 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.087 0.913 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.004 0.996 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.004 0.996 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 18.148 -2.612 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.036 4.036 3 C -0.191 4.191 4 N -0.313 5.313 5 C -0.055 4.055 6 C -0.087 4.087 7 H 0.101 0.899 8 C -0.133 4.133 9 C -0.146 4.146 10 C -0.067 4.067 11 N -0.250 5.250 12 C 0.031 3.969 13 C -0.589 4.589 14 H 0.050 0.950 15 C -0.188 4.188 16 N -0.589 5.589 17 Si 0.774 3.226 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.170 1.170 21 C -0.058 4.058 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.023 0.977 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.898 18.272 -2.780 19.728 hybrid contribution -0.378 -1.851 0.884 2.086 sum -7.276 16.421 -1.896 18.061 Atomic orbital electron populations 1.22456 0.96502 1.01548 1.03122 1.21613 0.93237 0.95953 0.92824 1.21708 1.01130 0.94186 1.02051 1.60559 1.57677 1.06691 1.06326 1.21791 0.98695 0.87962 0.97056 1.21069 0.97734 0.92048 0.97844 0.89899 1.21422 0.94599 1.00661 0.96627 1.21601 1.01415 0.92568 0.99015 1.21936 0.88925 0.96936 0.98887 1.62394 1.18657 1.08242 1.35733 1.20048 0.95864 0.86087 0.94859 1.21903 1.28959 0.92582 1.15446 0.95042 1.25950 0.95772 1.00417 0.96642 1.70086 1.41503 1.14210 1.33081 0.85650 0.80211 0.77933 0.78785 1.19075 1.20929 1.16980 1.21883 0.98586 0.94421 0.90922 0.93720 0.91237 0.91627 0.91810 0.91517 0.92969 0.92195 0.83487 0.92721 0.95194 0.89415 0.94726 0.90805 0.90493 0.97727 0.92190 0.95378 0.95181 0.92503 0.97733 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 9.16 71.99 0.66 -2.13 16 2 C 0.07 1.35 3.20 44.92 0.14 1.49 16 3 C -0.13 -2.06 9.52 71.98 0.69 -1.37 16 4 N -0.68 -14.26 5.76 -491.55 -2.83 -17.10 16 5 C 0.07 1.94 4.88 86.30 0.42 2.36 16 6 C -0.07 -2.00 2.49 -10.74 -0.03 -2.02 16 7 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 8 C -0.10 -2.78 5.14 30.68 0.16 -2.62 16 9 C -0.11 -3.27 6.09 30.64 0.19 -3.09 16 10 C 0.06 2.48 5.03 86.32 0.43 2.91 16 11 N -0.53 -22.29 4.86 -900.98 -4.38 -26.67 16 12 C 0.16 7.76 4.19 85.56 0.36 8.12 16 13 C -0.55 -31.94 8.27 25.60 0.21 -31.73 16 14 H 0.03 2.05 6.10 -2.91 -0.02 2.03 16 15 C 0.01 0.59 5.47 84.65 0.46 1.05 16 16 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 17 Si 0.95 44.44 27.37 68.60 1.88 46.32 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.25 -10.71 6.69 99.48 0.67 -10.05 16 21 C 0.07 2.78 4.40 86.33 0.38 3.16 16 22 H 0.04 0.80 7.45 -2.39 -0.02 0.78 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 25 H 0.06 1.32 7.80 -2.39 -0.02 1.30 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.35 6.41 8.47 -89.70 -0.76 5.65 16 30 H 0.05 1.60 8.06 -2.39 -0.02 1.58 16 31 H 0.03 0.77 7.43 -2.39 -0.02 0.75 16 32 H 0.09 2.21 7.84 -2.39 -0.02 2.19 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.00 0.21 6.73 -2.39 -0.02 0.19 16 37 H 0.06 2.38 8.12 -2.39 -0.02 2.37 16 38 H 0.03 1.36 7.49 -2.39 -0.02 1.34 16 39 H 0.03 1.44 7.29 -2.39 -0.02 1.42 16 40 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 41 H 0.00 0.20 6.86 -2.39 -0.02 0.19 16 42 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 Total: -1.00 -64.93 319.99 -0.80 -65.73 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.16 Total: 15.25 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 4.07 Total: -23.88 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -6.91 Total: -103.43 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -64.93 -0.80 -65.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063139778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.376 kcal (2) G-P(sol) polarization free energy of solvation -64.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds