Wall clock time and date at job start Mon Mar 30 2020 03:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46928 * 2 1 4 4 H 1.08997 * 109.47050 * 303.61265 * 3 2 1 5 5 C 1.50703 * 109.47066 * 183.61229 * 3 2 1 6 6 H 1.07997 * 119.99811 * 244.85502 * 5 3 2 7 7 C 1.37878 * 119.99759 * 64.85685 * 5 3 2 8 8 N 1.31513 * 120.00219 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99703 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47496 * 89.99773 * 9 7 5 11 11 H 1.48503 * 109.46958 * 209.99748 * 9 7 5 12 12 H 1.48503 * 109.47338 * 329.99505 * 9 7 5 13 13 N 1.46901 * 109.46712 * 63.61355 * 3 2 1 14 14 C 1.46842 * 110.99831 * 83.97260 * 13 3 2 15 15 H 1.09006 * 109.46895 * 65.82010 * 14 13 3 16 16 C 1.53001 * 109.46569 * 305.85152 * 14 13 3 17 17 C 1.53042 * 109.52355 * 185.83758 * 14 13 3 18 18 C 1.53115 * 109.27517 * 300.82016 * 17 14 13 19 19 C 1.53115 * 109.16528 * 57.65457 * 18 17 14 20 20 C 1.46852 * 110.99682 * 208.17937 * 13 3 2 21 21 H 1.09005 * 109.46085 * 294.16463 * 20 13 3 22 22 C 1.52998 * 109.46183 * 54.14426 * 20 13 3 23 23 N 1.46896 * 109.47462 * 278.81818 * 22 20 13 24 24 H 1.08996 * 109.46860 * 299.99736 * 1 2 3 25 25 H 1.08998 * 109.47044 * 59.99820 * 1 2 3 26 26 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47190 * 240.00605 * 2 1 3 28 28 H 1.08995 * 109.47532 * 120.00127 * 2 1 3 29 29 H 0.97002 * 119.99690 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47275 * 70.19230 * 16 14 13 31 31 H 1.08991 * 109.47541 * 190.20183 * 16 14 13 32 32 H 1.09003 * 109.46667 * 310.20046 * 16 14 13 33 33 H 1.09002 * 109.50303 * 60.76043 * 17 14 13 34 34 H 1.08993 * 109.50649 * 180.87727 * 17 14 13 35 35 H 1.09004 * 109.52094 * 177.56104 * 18 17 14 36 36 H 1.09009 * 109.52455 * 297.68276 * 18 17 14 37 37 H 1.09006 * 109.50773 * 182.40860 * 19 18 17 38 38 H 1.08996 * 109.50561 * 62.27994 * 19 18 17 39 39 H 1.09000 * 109.47207 * 38.82231 * 22 20 13 40 40 H 1.09007 * 109.46901 * 158.81916 * 22 20 13 41 41 H 1.00897 * 111.00294 * 184.22600 * 23 22 20 42 42 H 1.00903 * 111.00292 * 308.17757 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6247 1.9747 -0.8558 5 6 3.5444 1.4436 -0.0895 6 1 4.1339 1.8235 0.7317 7 6 4.1680 0.9595 -1.2199 8 7 3.4500 0.4964 -2.2198 9 14 6.0327 0.9600 -1.3306 10 1 6.5609 -0.3196 -0.7930 11 1 6.4442 1.1082 -2.7497 12 1 6.5753 2.0919 -0.5370 13 7 1.6228 2.1093 1.2407 14 6 2.5595 1.8202 2.3340 15 1 3.5287 2.2656 2.1094 16 6 2.7171 0.3057 2.4833 17 6 2.0187 2.4077 3.6396 18 6 1.8437 3.9203 3.4790 19 6 0.9020 4.1953 2.3035 20 6 1.4751 3.5561 1.0366 21 1 2.4494 3.9934 0.8182 22 6 0.5272 3.8111 -0.1369 23 7 1.2631 3.6705 -1.4004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8889 0.1555 -3.0149 30 1 3.2677 -0.0883 1.6291 31 1 3.2634 0.0859 3.4005 32 1 1.7323 -0.1595 2.5266 33 1 1.0559 1.9526 3.8722 34 1 2.7217 2.2065 4.4479 35 1 1.4180 4.3367 4.3920 36 1 2.8128 4.3807 3.2861 37 1 0.8071 5.2714 2.1571 38 1 -0.0784 3.7684 2.5149 39 1 -0.2883 3.0884 -0.1090 40 1 0.1212 4.8201 -0.0633 41 1 0.6765 3.9013 -2.1882 42 1 2.1004 4.2335 -1.3959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069722629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:33 Heat of formation + Delta-G solvation = -2.156289 kcal Electronic energy + Delta-G solvation = -19659.786281 eV Core-core repulsion = 17060.304614 eV Total energy + Delta-G solvation = -2599.481667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60900 -36.26634 -35.81639 -33.66397 -32.30898 -31.85463 -28.58019 -27.86730 -25.69094 -24.73830 -22.59618 -21.66054 -20.93392 -20.47200 -17.95975 -17.09833 -16.64072 -16.11097 -15.69997 -15.27512 -14.96620 -14.79431 -14.58870 -14.29220 -13.78805 -13.45108 -13.13692 -13.08841 -12.93165 -12.73693 -12.60995 -12.50959 -12.30342 -12.12009 -11.98428 -11.58698 -11.41480 -11.20232 -11.05211 -11.04693 -10.83371 -10.37665 -10.07187 -8.77448 -8.56304 -7.77446 -5.87438 1.38064 1.42390 1.47472 2.54106 3.43565 3.54033 3.81993 4.08647 4.20604 4.25169 4.47683 4.55637 4.65884 4.72309 4.78724 4.81451 4.93881 4.96543 4.97581 5.05624 5.11904 5.13507 5.21137 5.24229 5.31405 5.44880 5.48770 5.61054 5.68965 5.72450 5.78125 5.86126 5.96159 6.29034 6.43017 6.49882 6.61240 6.73173 6.83099 7.22951 7.43007 7.76468 9.19391 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.010728 C = 0.010017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.337131 B = 2609.477528 C = 2794.465103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.125 4.125 3 C 0.172 3.828 4 H 0.119 0.881 5 C -0.518 4.518 6 H 0.041 0.959 7 C 0.027 3.973 8 N -0.903 5.903 9 Si 0.919 3.081 10 H -0.288 1.288 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.516 5.516 14 C 0.088 3.912 15 H 0.012 0.988 16 C -0.136 4.136 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.104 4.104 20 C 0.088 3.912 21 H 0.008 0.992 22 C 0.078 3.922 23 N -0.836 5.836 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.249 0.751 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.339 0.661 42 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 6.895 8.163 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.163 4.163 3 C 0.065 3.935 4 H 0.136 0.864 5 C -0.558 4.558 6 H 0.059 0.941 7 C -0.171 4.171 8 N -0.544 5.544 9 Si 0.748 3.252 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.241 5.241 14 C -0.020 4.020 15 H 0.030 0.970 16 C -0.193 4.193 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.021 4.021 21 H 0.026 0.974 22 C -0.052 4.052 23 N -0.367 5.367 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.152 0.848 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.408 5.883 8.306 12.028 hybrid contribution 2.230 0.895 -0.901 2.567 sum -4.178 6.778 7.405 10.873 Atomic orbital electron populations 1.21511 0.97417 0.98629 1.00149 1.21955 0.93812 1.00589 0.99941 1.20216 0.91332 0.91526 0.90396 0.86438 1.22056 0.94947 1.38726 1.00075 0.94116 1.25312 0.99075 0.96571 0.96191 1.70060 1.34731 1.43406 1.06155 0.86200 0.84997 0.77571 0.76456 1.21434 1.21724 1.20582 1.62456 1.46859 1.07449 1.07327 1.21401 0.93500 0.95344 0.91797 0.97024 1.22049 1.00858 0.96070 1.00304 1.21653 1.01188 0.95767 0.95969 1.21520 0.99033 0.95865 0.98714 1.21588 0.99388 0.99705 0.93542 1.21568 0.95875 0.89984 0.94704 0.97440 1.21759 0.95936 0.98776 0.88741 1.58677 1.10042 1.63540 1.04424 0.92634 0.95339 0.94994 0.94579 0.93199 0.94169 0.92795 0.93263 0.92639 0.91498 0.91756 0.90113 0.93648 0.90843 0.91051 0.91560 0.93977 0.84774 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.79 71.98 0.70 -4.19 16 2 C -0.12 -5.97 4.92 30.60 0.15 -5.82 16 3 C 0.17 8.14 1.28 44.17 0.06 8.20 16 4 H 0.12 5.83 4.03 -2.42 -0.01 5.82 16 5 C -0.52 -27.46 6.33 25.60 0.16 -27.30 16 6 H 0.04 2.23 5.16 -2.91 -0.02 2.22 16 7 C 0.03 1.49 5.31 84.66 0.45 1.94 16 8 N -0.90 -51.86 11.67 21.45 0.25 -51.61 16 9 Si 0.92 44.68 29.54 68.60 2.03 46.71 16 10 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 13 N -0.52 -20.53 3.61 -825.39 -2.98 -23.52 16 14 C 0.09 3.42 1.81 44.94 0.08 3.50 16 15 H 0.01 0.54 5.90 -2.38 -0.01 0.52 16 16 C -0.14 -5.31 7.31 71.98 0.53 -4.79 16 17 C -0.11 -3.24 5.35 30.65 0.16 -3.07 16 18 C -0.11 -3.01 6.00 30.67 0.18 -2.83 16 19 C -0.10 -2.83 5.27 30.65 0.16 -2.67 16 20 C 0.09 3.09 2.09 44.94 0.09 3.19 16 21 H 0.01 0.31 7.87 -2.38 -0.02 0.29 16 22 C 0.08 2.52 5.85 86.30 0.50 3.02 16 23 N -0.84 -29.59 6.80 -186.72 -1.27 -30.86 16 24 H 0.05 2.14 7.71 -2.39 -0.02 2.12 16 25 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 1.99 6.39 -2.39 -0.02 1.97 16 28 H 0.05 2.35 3.68 -2.39 -0.01 2.34 16 29 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.05 2.50 4.92 -2.39 -0.01 2.48 16 31 H 0.05 1.67 8.11 -2.39 -0.02 1.65 16 32 H 0.05 2.12 7.01 -2.39 -0.02 2.10 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.28 8.12 -2.39 -0.02 2.26 16 40 H 0.04 1.11 7.96 -2.38 -0.02 1.09 16 41 H 0.34 10.29 9.08 -89.70 -0.81 9.47 16 42 H 0.34 12.00 8.75 -89.69 -0.78 11.22 16 Total: -1.00 -59.02 302.38 0.67 -58.35 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.59 Total: 31.75 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 3.24 Total: -30.82 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -4.00 Total: -105.99 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -59.02 0.67 -58.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069722629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.192 kcal (2) G-P(sol) polarization free energy of solvation -59.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds