Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 H 1.09002 * 109.46985 * 184.39675 * 3 2 1 5 5 C 1.50701 * 109.47136 * 64.39473 * 3 2 1 6 6 H 1.07998 * 119.99677 * 245.77414 * 5 3 2 7 7 C 1.37881 * 120.00032 * 65.78222 * 5 3 2 8 8 N 1.31514 * 119.99575 * 5.46866 * 7 5 3 9 9 Si 1.86792 * 119.99979 * 185.47361 * 7 5 3 10 10 H 1.48497 * 109.47207 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47110 * 299.99588 * 9 7 5 12 12 H 1.48507 * 109.47279 * 59.99669 * 9 7 5 13 13 N 1.46899 * 109.46852 * 304.39374 * 3 2 1 14 14 C 1.46841 * 111.00355 * 299.32096 * 13 3 2 15 15 C 1.53032 * 109.52822 * 174.16181 * 14 13 3 16 16 C 1.53121 * 109.27688 * 59.17897 * 15 14 13 17 17 C 1.53111 * 109.16178 * 302.34778 * 16 15 14 18 18 H 1.08999 * 109.50898 * 297.71472 * 17 16 15 19 19 C 1.53005 * 109.53754 * 177.61086 * 17 16 15 20 20 H 1.09000 * 109.46947 * 300.18332 * 19 17 16 21 21 C 1.53005 * 109.46725 * 60.17797 * 19 17 16 22 22 N 1.46897 * 109.47291 * 180.17994 * 19 17 16 23 23 C 1.46856 * 110.99643 * 175.11418 * 13 3 2 24 24 H 1.08993 * 109.47298 * 304.99693 * 1 2 3 25 25 H 1.09006 * 109.47002 * 64.99603 * 1 2 3 26 26 H 1.09005 * 109.47025 * 184.98818 * 1 2 3 27 27 H 1.09003 * 109.47493 * 239.99566 * 2 1 3 28 28 H 1.09000 * 109.46896 * 119.99794 * 2 1 3 29 29 H 0.96998 * 120.00768 * 355.12901 * 8 7 5 30 30 H 1.09000 * 109.46888 * 294.18058 * 14 13 3 31 31 H 1.09004 * 109.46100 * 54.14391 * 14 13 3 32 32 H 1.09003 * 109.50034 * 299.24321 * 15 14 13 33 33 H 1.08994 * 109.54013 * 179.14171 * 15 14 13 34 34 H 1.09005 * 109.51987 * 182.44249 * 16 15 14 35 35 H 1.09004 * 109.52048 * 62.25517 * 16 15 14 36 36 H 1.08996 * 109.47173 * 300.00173 * 21 19 17 37 37 H 1.08996 * 109.47180 * 60.00078 * 21 19 17 38 38 H 1.08998 * 109.47126 * 180.02562 * 21 19 17 39 39 H 1.00902 * 110.99682 * 180.02562 * 22 19 17 40 40 H 1.00900 * 111.00184 * 303.95284 * 22 19 17 41 41 H 1.08992 * 109.46366 * 305.85370 * 23 13 3 42 42 H 1.08994 * 109.46176 * 65.82478 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0788 5 6 1.6285 2.1208 1.2813 6 1 0.9286 2.9429 1.2564 7 6 2.1457 1.6919 2.4853 8 7 3.0777 0.7643 2.5074 9 14 1.5224 2.4282 4.0849 10 1 2.2329 1.8013 5.2283 11 1 1.7742 3.8917 4.0873 12 1 0.0642 2.1765 4.2107 13 7 1.4656 2.1649 -1.1429 14 6 1.8595 1.5404 -2.4121 15 6 1.1292 2.2270 -3.5684 16 6 1.4858 3.7160 -3.5785 17 6 1.1097 4.3320 -2.2281 18 1 0.0334 4.2495 -2.0775 19 6 1.5170 5.8067 -2.2072 20 1 2.5932 5.8886 -2.3592 21 6 0.7858 6.5535 -3.3247 22 7 1.1595 6.3951 -0.9096 23 6 1.8407 3.5843 -1.1106 24 1 -0.3633 0.5894 0.8418 25 1 -0.3633 0.4344 -0.9314 26 1 -0.3633 -1.0238 0.0894 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3511 0.3316 1.6835 30 1 2.9358 1.6444 -2.5496 31 1 1.5966 0.4827 -2.3934 32 1 0.0530 2.1114 -3.4390 33 1 1.4329 1.7737 -4.5119 34 1 0.9341 4.2173 -4.3738 35 1 2.5563 3.8331 -3.7468 36 1 1.0511 6.1169 -4.2875 37 1 -0.2904 6.4716 -3.1728 38 1 1.0762 7.6040 -3.3101 39 1 1.4181 7.3696 -0.8709 40 1 0.1766 6.2742 -0.7162 41 1 1.5641 4.0113 -0.1467 42 1 2.9171 3.6788 -1.2541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069725490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = -18.650335 kcal Electronic energy + Delta-G solvation = -18851.846047 eV Core-core repulsion = 16251.649145 eV Total energy + Delta-G solvation = -2600.196903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.97904 -36.38881 -34.24170 -31.72078 -30.69840 -29.73433 -28.20109 -25.96167 -23.86195 -23.37924 -22.07582 -20.66639 -19.41541 -18.86226 -16.64776 -15.90653 -15.12163 -14.47000 -14.29874 -14.06702 -13.63981 -13.34459 -13.25969 -13.04446 -12.68362 -12.58238 -12.33814 -11.90124 -11.40331 -11.37147 -11.04332 -10.93240 -10.71414 -10.55433 -10.33589 -10.30582 -10.02714 -9.97642 -9.75823 -9.70236 -9.36905 -8.42641 -8.28485 -8.24970 -7.09519 -6.21560 -3.92128 3.51552 3.53216 3.71355 4.59926 4.66774 4.75490 5.13752 5.21444 5.33372 5.35600 5.44407 5.47872 5.49956 5.79463 5.90288 5.95365 6.05846 6.10296 6.12893 6.21474 6.27345 6.34738 6.37854 6.41793 6.55233 6.59463 6.63052 6.87845 6.97425 7.03907 7.25903 7.30659 7.37329 7.51221 7.56289 7.64812 8.03666 8.19363 8.53964 8.74117 9.00402 9.77516 11.14203 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021705 B = 0.008704 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.744628 B = 3216.167549 C = 4150.119999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.115 4.115 3 C 0.206 3.794 4 H -0.014 1.014 5 C -0.572 4.572 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 1.066 2.934 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.524 5.524 14 C 0.049 3.951 15 C -0.112 4.112 16 C -0.113 4.113 17 C -0.077 4.077 18 H 0.070 0.930 19 C 0.093 3.907 20 H 0.074 0.926 21 C -0.186 4.186 22 N -0.837 5.837 23 C 0.082 3.918 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.064 0.936 29 H 0.269 0.731 30 H 0.015 0.985 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.334 0.666 40 H 0.340 0.660 41 H 0.102 0.898 42 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 7.430 -11.097 14.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C 0.099 3.901 4 H 0.003 0.997 5 C -0.611 4.611 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.895 3.105 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.249 5.249 14 C -0.080 4.080 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.096 4.096 18 H 0.089 0.911 19 C -0.019 4.019 20 H 0.093 0.907 21 C -0.246 4.246 22 N -0.366 5.366 23 C -0.046 4.046 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.146 0.854 40 H 0.153 0.847 41 H 0.120 0.880 42 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -4.241 6.843 -9.077 12.133 hybrid contribution 0.109 0.653 -2.431 2.519 sum -4.133 7.496 -11.507 14.342 Atomic orbital electron populations 1.21424 0.96362 0.97867 1.01991 1.21648 0.96346 0.98494 0.98843 1.19336 0.91446 0.90463 0.88831 0.99662 1.21848 1.29390 1.18694 0.91126 0.92371 1.25685 0.94305 0.96511 1.02047 1.70791 1.27130 1.25829 1.31820 0.83583 0.75703 0.75646 0.75582 1.21123 1.21491 1.21542 1.61922 1.59880 1.01906 1.01167 1.22079 0.96017 0.98830 0.91041 1.21542 1.01075 0.95041 0.97356 1.21646 1.00488 0.96029 0.96957 1.21243 1.00872 0.92318 0.95217 0.91122 1.21446 0.99343 0.94165 0.86951 0.90745 1.22694 1.00972 1.00058 1.00833 1.58802 1.24639 1.21158 1.31956 1.21867 0.95104 0.88302 0.99366 0.91930 0.93602 0.96337 0.96144 0.91754 0.91934 0.96684 0.91329 0.91627 0.92731 0.92618 0.92784 0.92022 0.92842 0.93271 0.85369 0.84728 0.88019 0.97200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.51 37.16 0.35 -2.24 16 2 C -0.11 -2.72 4.89 -26.73 -0.13 -2.85 16 3 C 0.21 5.19 1.39 -68.86 -0.10 5.09 16 4 H -0.01 -0.40 7.65 -51.93 -0.40 -0.80 16 5 C -0.57 -15.71 6.50 -34.44 -0.22 -15.93 16 6 H 0.06 1.63 6.61 -52.49 -0.35 1.28 16 7 C 0.02 0.51 5.23 -17.82 -0.09 0.42 16 8 N -0.92 -27.62 13.10 55.43 0.73 -26.90 16 9 Si 1.07 25.51 29.91 -169.99 -5.08 20.43 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.52 -11.27 3.66 -228.08 -0.84 -12.11 16 14 C 0.05 0.92 5.19 -3.84 -0.02 0.90 16 15 C -0.11 -1.69 6.09 -26.65 -0.16 -1.86 16 16 C -0.11 -1.60 4.86 -26.61 -0.13 -1.73 16 17 C -0.08 -1.21 2.05 -90.54 -0.19 -1.40 16 18 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 19 C 0.09 1.24 2.95 -67.71 -0.20 1.04 16 20 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 21 C -0.19 -1.98 9.13 37.16 0.34 -1.64 16 22 N -0.84 -11.23 8.51 -4.66 -0.04 -11.27 16 23 C 0.08 1.66 4.31 -3.83 -0.02 1.65 16 24 H 0.06 1.49 7.20 -51.93 -0.37 1.11 16 25 H 0.04 0.95 7.63 -51.93 -0.40 0.55 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.02 0.44 6.53 -51.93 -0.34 0.10 16 28 H 0.06 1.68 6.12 -51.93 -0.32 1.36 16 29 H 0.27 8.09 5.77 -40.82 -0.24 7.85 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 1.29 6.12 -51.93 -0.32 0.97 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.68 6.58 -51.93 -0.34 0.33 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.63 6.50 -51.93 -0.34 0.29 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.33 3.72 9.04 -39.29 -0.36 3.36 16 40 H 0.34 4.34 8.98 -39.29 -0.35 3.99 16 41 H 0.10 2.34 5.58 -51.93 -0.29 2.05 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -29.35 310.34 -8.55 -37.90 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.42 Total: 5.84 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -0.56 Total: -18.56 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.15 Total: -50.28 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.35 -8.55 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069725490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.249 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds