Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 H 1.09002 * 109.46985 * 184.39675 * 3 2 1 5 5 C 1.50701 * 109.47136 * 64.39473 * 3 2 1 6 6 H 1.07998 * 119.99677 * 245.77414 * 5 3 2 7 7 C 1.37881 * 120.00032 * 65.78222 * 5 3 2 8 8 N 1.31514 * 119.99575 * 5.46866 * 7 5 3 9 9 Si 1.86792 * 119.99979 * 185.47361 * 7 5 3 10 10 H 1.48497 * 109.47207 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47110 * 299.99588 * 9 7 5 12 12 H 1.48507 * 109.47279 * 59.99669 * 9 7 5 13 13 N 1.46899 * 109.46852 * 304.39374 * 3 2 1 14 14 C 1.46841 * 111.00355 * 299.32096 * 13 3 2 15 15 C 1.53032 * 109.52822 * 174.16181 * 14 13 3 16 16 C 1.53121 * 109.27688 * 59.17897 * 15 14 13 17 17 C 1.53111 * 109.16178 * 302.34778 * 16 15 14 18 18 H 1.08999 * 109.50898 * 297.71472 * 17 16 15 19 19 C 1.53005 * 109.53754 * 177.61086 * 17 16 15 20 20 H 1.09000 * 109.46947 * 300.18332 * 19 17 16 21 21 C 1.53005 * 109.46725 * 60.17797 * 19 17 16 22 22 N 1.46897 * 109.47291 * 180.17994 * 19 17 16 23 23 C 1.46856 * 110.99643 * 175.11418 * 13 3 2 24 24 H 1.08993 * 109.47298 * 304.99693 * 1 2 3 25 25 H 1.09006 * 109.47002 * 64.99603 * 1 2 3 26 26 H 1.09005 * 109.47025 * 184.98818 * 1 2 3 27 27 H 1.09003 * 109.47493 * 239.99566 * 2 1 3 28 28 H 1.09000 * 109.46896 * 119.99794 * 2 1 3 29 29 H 0.96998 * 120.00768 * 355.12901 * 8 7 5 30 30 H 1.09000 * 109.46888 * 294.18058 * 14 13 3 31 31 H 1.09004 * 109.46100 * 54.14391 * 14 13 3 32 32 H 1.09003 * 109.50034 * 299.24321 * 15 14 13 33 33 H 1.08994 * 109.54013 * 179.14171 * 15 14 13 34 34 H 1.09005 * 109.51987 * 182.44249 * 16 15 14 35 35 H 1.09004 * 109.52048 * 62.25517 * 16 15 14 36 36 H 1.08996 * 109.47173 * 300.00173 * 21 19 17 37 37 H 1.08996 * 109.47180 * 60.00078 * 21 19 17 38 38 H 1.08998 * 109.47126 * 180.02562 * 21 19 17 39 39 H 1.00902 * 110.99682 * 180.02562 * 22 19 17 40 40 H 1.00900 * 111.00184 * 303.95284 * 22 19 17 41 41 H 1.08992 * 109.46366 * 305.85370 * 23 13 3 42 42 H 1.08994 * 109.46176 * 65.82478 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0788 5 6 1.6285 2.1208 1.2813 6 1 0.9286 2.9429 1.2564 7 6 2.1457 1.6919 2.4853 8 7 3.0777 0.7643 2.5074 9 14 1.5224 2.4282 4.0849 10 1 2.2329 1.8013 5.2283 11 1 1.7742 3.8917 4.0873 12 1 0.0642 2.1765 4.2107 13 7 1.4656 2.1649 -1.1429 14 6 1.8595 1.5404 -2.4121 15 6 1.1292 2.2270 -3.5684 16 6 1.4858 3.7160 -3.5785 17 6 1.1097 4.3320 -2.2281 18 1 0.0334 4.2495 -2.0775 19 6 1.5170 5.8067 -2.2072 20 1 2.5932 5.8886 -2.3592 21 6 0.7858 6.5535 -3.3247 22 7 1.1595 6.3951 -0.9096 23 6 1.8407 3.5843 -1.1106 24 1 -0.3633 0.5894 0.8418 25 1 -0.3633 0.4344 -0.9314 26 1 -0.3633 -1.0238 0.0894 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3511 0.3316 1.6835 30 1 2.9358 1.6444 -2.5496 31 1 1.5966 0.4827 -2.3934 32 1 0.0530 2.1114 -3.4390 33 1 1.4329 1.7737 -4.5119 34 1 0.9341 4.2173 -4.3738 35 1 2.5563 3.8331 -3.7468 36 1 1.0511 6.1169 -4.2875 37 1 -0.2904 6.4716 -3.1728 38 1 1.0762 7.6040 -3.3101 39 1 1.4181 7.3696 -0.8709 40 1 0.1766 6.2742 -0.7162 41 1 1.5641 4.0113 -0.1467 42 1 2.9171 3.6788 -1.2541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069725490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = -38.368078 kcal Electronic energy + Delta-G solvation = -18852.701073 eV Core-core repulsion = 16251.649145 eV Total energy + Delta-G solvation = -2601.051928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.47097 -37.89915 -35.81403 -33.58523 -32.40227 -31.11084 -29.26197 -27.89206 -25.78609 -24.78968 -23.65626 -22.08819 -20.80677 -20.57880 -18.68548 -17.30264 -16.63413 -15.83763 -15.77616 -15.59981 -15.55448 -14.86032 -14.58023 -14.43087 -14.13967 -13.97894 -13.64946 -13.48139 -13.19674 -12.84977 -12.63427 -12.49301 -12.29229 -12.12846 -11.94952 -11.91831 -11.82835 -11.60068 -11.45104 -11.21529 -10.90649 -10.43790 -10.32649 -9.44651 -8.94388 -8.49784 -6.20287 1.54699 1.62743 1.81114 2.60853 3.22995 3.28838 3.61803 3.90817 4.01874 4.11979 4.19096 4.31264 4.39176 4.45588 4.49870 4.53250 4.63118 4.68961 4.73841 4.81465 4.90766 4.99263 5.03759 5.06466 5.09488 5.13778 5.19412 5.27539 5.32645 5.35793 5.44805 5.55570 5.63252 5.70399 6.02315 6.15062 6.37834 6.57123 6.61076 6.71248 6.85576 7.57428 8.86129 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021705 B = 0.008704 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.744628 B = 3216.167549 C = 4150.119999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.109 4.109 3 C 0.208 3.792 4 H -0.061 1.061 5 C -0.570 4.570 6 H 0.050 0.950 7 C -0.032 4.032 8 N -0.944 5.944 9 Si 1.109 2.891 10 H -0.288 1.288 11 H -0.275 1.275 12 H -0.270 1.270 13 N -0.523 5.523 14 C 0.045 3.955 15 C -0.105 4.105 16 C -0.109 4.109 17 C -0.067 4.067 18 H 0.068 0.932 19 C 0.096 3.904 20 H 0.063 0.937 21 C -0.175 4.175 22 N -0.856 5.856 23 C 0.088 3.912 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.256 0.744 30 H 0.001 0.999 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.347 0.653 40 H 0.343 0.657 41 H 0.070 0.930 42 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 8.513 -12.917 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.147 4.147 3 C 0.101 3.899 4 H -0.043 1.043 5 C -0.608 4.608 6 H 0.069 0.931 7 C -0.229 4.229 8 N -0.583 5.583 9 Si 0.932 3.068 10 H -0.214 1.214 11 H -0.201 1.201 12 H -0.196 1.196 13 N -0.247 5.247 14 C -0.083 4.083 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.087 4.087 18 H 0.087 0.913 19 C -0.016 4.016 20 H 0.081 0.919 21 C -0.234 4.234 22 N -0.387 5.387 23 C -0.040 4.040 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.020 0.980 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.088 0.912 42 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges -6.048 7.943 -10.931 14.804 hybrid contribution 0.719 0.314 -1.897 2.053 sum -5.329 8.257 -12.828 16.160 Atomic orbital electron populations 1.21291 0.94384 0.99125 1.01571 1.21521 0.97908 0.97085 0.98232 1.19186 0.88860 0.91953 0.89914 1.04324 1.22045 1.28430 1.18106 0.92228 0.93133 1.27020 0.93967 0.96385 1.05561 1.70902 1.28880 1.27381 1.31141 0.83021 0.76158 0.75593 0.71982 1.21413 1.20102 1.19552 1.61945 1.59088 1.02329 1.01335 1.22219 0.95872 0.99218 0.91015 1.21530 1.00687 0.95422 0.96627 1.21649 1.00885 0.95514 0.96662 1.21161 0.99796 0.93418 0.94278 0.91327 1.21356 0.99100 0.92936 0.88180 0.91863 1.22558 1.00760 1.00429 0.99673 1.58763 1.25063 1.22317 1.32524 1.21789 0.94071 0.88134 1.00051 0.94260 0.92297 0.93856 0.94425 0.94661 0.93313 0.98046 0.91409 0.91189 0.89808 0.89201 0.93024 0.91045 0.92311 0.91892 0.83934 0.84340 0.91199 0.99891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.55 9.51 71.98 0.68 -3.87 16 2 C -0.11 -5.26 4.89 30.59 0.15 -5.11 16 3 C 0.21 10.92 1.39 44.17 0.06 10.98 16 4 H -0.06 -3.66 7.65 -2.39 -0.02 -3.68 16 5 C -0.57 -32.29 6.50 25.60 0.17 -32.13 16 6 H 0.05 2.90 6.61 -2.91 -0.02 2.88 16 7 C -0.03 -1.86 5.23 84.66 0.44 -1.42 16 8 N -0.94 -58.91 13.10 21.45 0.28 -58.62 16 9 Si 1.11 51.99 29.91 68.60 2.05 54.04 16 10 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.52 -22.77 3.66 -875.51 -3.21 -25.98 16 14 C 0.05 1.65 5.19 86.33 0.45 2.10 16 15 C -0.10 -2.86 6.09 30.65 0.19 -2.67 16 16 C -0.11 -2.76 4.86 30.67 0.15 -2.61 16 17 C -0.07 -2.01 2.05 -10.74 -0.02 -2.04 16 18 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 19 C 0.10 2.41 2.95 44.92 0.13 2.54 16 20 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 21 C -0.18 -3.13 9.13 71.98 0.66 -2.47 16 22 N -0.86 -22.23 8.51 -168.67 -1.43 -23.66 16 23 C 0.09 3.65 4.31 86.33 0.37 4.02 16 24 H 0.04 1.84 7.20 -2.39 -0.02 1.82 16 25 H 0.06 2.34 7.63 -2.38 -0.02 2.32 16 26 H 0.04 1.61 8.14 -2.38 -0.02 1.60 16 27 H 0.04 1.65 6.53 -2.39 -0.02 1.64 16 28 H 0.03 1.90 6.12 -2.39 -0.01 1.88 16 29 H 0.26 16.24 5.77 -92.71 -0.53 15.71 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.07 2.48 6.12 -2.38 -0.01 2.46 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.74 6.58 -2.38 -0.02 1.73 16 35 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.07 1.15 6.50 -2.39 -0.02 1.14 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.35 7.29 9.04 -89.69 -0.81 6.48 16 40 H 0.34 8.41 8.98 -89.69 -0.81 7.60 16 41 H 0.07 3.34 5.58 -2.39 -0.01 3.32 16 42 H -0.02 -0.80 8.14 -2.39 -0.02 -0.81 16 Total: -1.00 -66.19 310.34 0.73 -65.46 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -0.39 Total: 21.42 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 3.43 Total: -32.66 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -4.36 Total: -108.26 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Total: -66.19 0.73 -65.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069725490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.095 kcal (2) G-P(sol) polarization free energy of solvation -66.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds