Wall clock time and date at job start Mon Mar 30 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.46743 * 2 1 4 4 H 1.08999 * 109.46961 * 302.87650 * 3 2 1 5 5 C 1.50699 * 109.46949 * 182.87833 * 3 2 1 6 6 H 1.07995 * 120.00119 * 273.85723 * 5 3 2 7 7 C 1.37883 * 120.00017 * 93.86048 * 5 3 2 8 8 N 1.31515 * 119.99967 * 183.33402 * 7 5 3 9 9 Si 1.86796 * 119.99780 * 3.32497 * 7 5 3 10 10 H 1.48499 * 109.46931 * 93.25218 * 9 7 5 11 11 H 1.48508 * 109.47275 * 213.24893 * 9 7 5 12 12 H 1.48497 * 109.47360 * 333.25204 * 9 7 5 13 13 N 1.46898 * 109.46972 * 62.88061 * 3 2 1 14 14 C 1.46847 * 111.00024 * 58.70034 * 13 3 2 15 15 C 1.53040 * 109.52197 * 185.83865 * 14 13 3 16 16 C 1.53120 * 109.30997 * 300.80215 * 15 14 13 17 17 C 1.53194 * 109.11940 * 57.63560 * 16 15 14 18 18 H 1.09003 * 109.49588 * 182.42384 * 17 16 15 19 19 C 1.53006 * 109.52615 * 62.33665 * 17 16 15 20 20 C 1.46846 * 110.99600 * 182.90832 * 13 3 2 21 21 H 1.08997 * 109.46520 * 294.16087 * 20 13 3 22 22 C 1.52996 * 109.46210 * 54.14758 * 20 13 3 23 23 N 1.46907 * 109.47169 * 182.46943 * 22 20 13 24 24 H 1.09004 * 109.47131 * 294.92165 * 1 2 3 25 25 H 1.08998 * 109.47515 * 54.92416 * 1 2 3 26 26 H 1.09001 * 109.46709 * 174.92411 * 1 2 3 27 27 H 1.08997 * 109.47531 * 240.00429 * 2 1 3 28 28 H 1.08995 * 109.47787 * 119.99737 * 2 1 3 29 29 H 0.96996 * 119.99688 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46486 * 65.82269 * 14 13 3 31 31 H 1.09000 * 109.46398 * 305.85269 * 14 13 3 32 32 H 1.08999 * 109.50422 * 60.76188 * 15 14 13 33 33 H 1.08998 * 109.50424 * 180.83998 * 15 14 13 34 34 H 1.09003 * 109.52231 * 177.57739 * 16 15 14 35 35 H 1.09005 * 109.52119 * 297.76602 * 16 15 14 36 36 H 1.09000 * 109.47228 * 300.15622 * 19 17 16 37 37 H 1.09004 * 109.47045 * 60.16068 * 19 17 16 38 38 H 1.08996 * 109.46915 * 180.15660 * 19 17 16 39 39 H 1.08997 * 109.47223 * 302.46083 * 22 20 13 40 40 H 1.08998 * 109.47410 * 62.46606 * 22 20 13 41 41 H 1.00900 * 110.99915 * 61.35391 * 23 22 20 42 42 H 1.00897 * 111.00020 * 185.32079 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6350 1.9711 -0.8631 5 6 3.5452 1.4433 -0.0713 6 1 4.1287 1.3650 0.8340 7 6 4.1775 1.5439 -1.2925 8 7 5.4892 1.4785 -1.3612 9 14 3.1709 1.7728 -2.8493 10 1 3.0479 3.2217 -3.1507 11 1 3.8460 1.0875 -3.9807 12 1 1.8185 1.1912 -2.6544 13 7 1.6078 2.1147 1.2327 14 6 2.1103 1.4109 2.4196 15 6 1.5234 2.0505 3.6800 16 6 1.9246 3.5273 3.7323 17 6 1.4315 4.2264 2.4615 18 1 1.7512 5.2685 2.4722 19 6 -0.0960 4.1613 2.4018 20 6 2.0211 3.5238 1.2363 21 1 3.1088 3.5832 1.2723 22 6 1.5149 4.2067 -0.0357 23 7 1.9782 5.6006 -0.0607 24 1 -0.3633 0.4331 0.9320 25 1 -0.3634 0.5905 -0.8410 26 1 -0.3633 -1.0237 -0.0909 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 5.9339 1.5490 -2.2203 30 1 3.1976 1.4802 2.4498 31 1 1.8145 0.3629 2.3727 32 1 0.4366 1.9692 3.6571 33 1 1.9081 1.5374 4.5614 34 1 1.4728 3.9968 4.6061 35 1 3.0099 3.6079 3.7945 36 1 -0.4152 3.1191 2.3924 37 1 -0.5154 4.6620 3.2746 38 1 -0.4456 4.6566 1.4960 39 1 1.9003 3.6802 -0.9088 40 1 0.4252 4.1857 -0.0504 41 1 2.9861 5.6465 -0.0701 42 1 1.5862 6.0979 -0.8462 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069726913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:46 Heat of formation + Delta-G solvation = -9.169021 kcal Electronic energy + Delta-G solvation = -19509.552518 eV Core-core repulsion = 16909.766756 eV Total energy + Delta-G solvation = -2599.785762 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.26068 -35.24208 -34.10952 -32.13946 -31.06646 -30.36970 -27.10804 -26.31265 -24.49650 -23.16143 -22.33634 -20.50939 -19.11175 -17.98808 -16.71374 -15.99592 -15.08291 -14.64108 -14.29025 -14.10132 -13.87300 -13.30315 -13.12506 -12.85562 -12.51090 -12.32937 -11.90685 -11.79400 -11.71889 -11.47481 -11.12082 -10.95998 -10.89446 -10.66628 -10.22854 -10.17622 -9.95206 -9.88497 -9.73326 -9.54934 -9.29228 -9.16893 -8.60846 -8.09680 -7.02202 -6.15890 -4.15290 3.15711 3.28159 3.30960 4.32089 4.77216 5.15606 5.27146 5.35766 5.43089 5.59308 5.75843 5.93731 5.97528 6.03306 6.09107 6.12448 6.20464 6.23444 6.29058 6.32299 6.44039 6.47261 6.52241 6.55929 6.71723 6.76397 6.77464 6.82605 6.85520 7.00301 7.01383 7.10570 7.23679 7.28202 7.56497 7.60164 7.84515 8.21468 8.30093 8.45402 8.90491 9.49097 10.97250 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.011058 C = 0.009671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.873996 B = 2531.491725 C = 2894.481665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.172 3.828 4 H 0.046 0.954 5 C -0.536 4.536 6 H 0.075 0.925 7 C 0.076 3.924 8 N -0.897 5.897 9 Si 0.866 3.134 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.258 1.258 13 N -0.521 5.521 14 C 0.059 3.941 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.074 4.074 18 H 0.072 0.928 19 C -0.133 4.133 20 C 0.107 3.893 21 H 0.048 0.952 22 C 0.064 3.936 23 N -0.849 5.849 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.262 0.738 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.049 0.951 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.339 0.661 42 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.006 3.641 5.009 10.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C 0.064 3.936 4 H 0.064 0.936 5 C -0.575 4.575 6 H 0.093 0.907 7 C -0.126 4.126 8 N -0.535 5.535 9 Si 0.693 3.307 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.183 1.183 13 N -0.246 5.246 14 C -0.069 4.069 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.093 4.093 18 H 0.090 0.910 19 C -0.191 4.191 20 C -0.003 4.003 21 H 0.066 0.934 22 C -0.067 4.067 23 N -0.377 5.377 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.151 0.849 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.741 3.678 5.603 11.824 hybrid contribution 1.120 -0.182 -2.009 2.307 sum -8.621 3.496 3.594 9.973 Atomic orbital electron populations 1.21735 0.97790 0.98929 1.01456 1.21789 0.93427 0.99161 1.00684 1.19862 0.94007 0.90664 0.89023 0.93603 1.21614 0.90605 1.50626 0.94678 0.90713 1.25006 0.94553 0.94440 0.98627 1.69924 1.07998 1.50192 1.25368 0.87041 0.81465 0.78401 0.83746 1.20652 1.21481 1.18252 1.62341 1.58581 1.00880 1.02752 1.21928 0.97865 0.97569 0.89558 1.21646 1.01016 0.95501 0.97308 1.21622 1.00219 0.95965 0.97456 1.21065 0.95733 0.98823 0.93698 0.90978 1.21741 0.95543 1.02026 0.99750 1.21198 0.97799 0.88424 0.92847 0.93371 1.21915 0.99741 0.87431 0.97570 1.58733 1.14112 1.14933 1.49929 0.92364 0.94135 0.95056 0.93234 0.92785 0.92774 0.94385 0.91413 0.91751 0.93041 0.93070 0.92758 0.91648 0.94783 0.93190 0.94770 0.91186 0.84906 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.72 37.16 0.36 -2.14 16 2 C -0.11 -2.33 5.09 -26.73 -0.14 -2.46 16 3 C 0.17 3.82 0.92 -68.86 -0.06 3.76 16 4 H 0.05 1.07 3.28 -51.93 -0.17 0.90 16 5 C -0.54 -14.13 7.38 -34.44 -0.25 -14.39 16 6 H 0.07 2.19 6.44 -52.49 -0.34 1.85 16 7 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 9 Si 0.87 20.88 25.98 -169.99 -4.42 16.46 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.26 -5.98 6.52 56.52 0.37 -5.61 16 13 N -0.52 -10.17 3.24 -220.14 -0.71 -10.89 16 14 C 0.06 1.11 4.80 -3.83 -0.02 1.09 16 15 C -0.12 -1.82 5.74 -26.65 -0.15 -1.97 16 16 C -0.11 -1.77 5.52 -26.57 -0.15 -1.92 16 17 C -0.07 -1.21 2.60 -90.49 -0.24 -1.45 16 18 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 19 C -0.13 -2.01 8.39 37.16 0.31 -1.70 16 20 C 0.11 2.03 1.44 -67.72 -0.10 1.93 16 21 H 0.05 1.09 7.38 -51.93 -0.38 0.71 16 22 C 0.06 1.17 5.55 -3.82 -0.02 1.15 16 23 N -0.85 -13.45 8.95 -10.37 -0.09 -13.54 16 24 H 0.06 0.99 7.84 -51.93 -0.41 0.59 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 1.08 8.00 -51.93 -0.42 0.67 16 28 H 0.05 1.10 6.10 -51.93 -0.32 0.79 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.04 0.82 6.47 -51.93 -0.34 0.48 16 31 H 0.07 1.26 5.91 -51.93 -0.31 0.95 16 32 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.03 6.01 -51.93 -0.31 0.72 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.76 6.36 -51.93 -0.33 0.43 16 39 H 0.03 0.72 4.98 -51.93 -0.26 0.46 16 40 H 0.07 1.24 6.29 -51.93 -0.33 0.91 16 41 H 0.34 5.50 9.05 -39.29 -0.36 5.14 16 42 H 0.33 4.59 9.08 -39.29 -0.36 4.23 16 LS Contribution 300.09 15.07 4.52 4.52 Total: -1.00 -27.60 300.09 -7.54 -35.14 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -7.06 Total: 10.22 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.55 Total: -16.08 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.03 Total: -50.26 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.42 Total: 16.46 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.60 -7.54 -35.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069726913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.968 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds