Wall clock time and date at job start Mon Mar 30 2020 03:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.46743 * 2 1 4 4 H 1.08999 * 109.46961 * 302.87650 * 3 2 1 5 5 C 1.50699 * 109.46949 * 182.87833 * 3 2 1 6 6 H 1.07995 * 120.00119 * 273.85723 * 5 3 2 7 7 C 1.37883 * 120.00017 * 93.86048 * 5 3 2 8 8 N 1.31515 * 119.99967 * 183.33402 * 7 5 3 9 9 Si 1.86796 * 119.99780 * 3.32497 * 7 5 3 10 10 H 1.48499 * 109.46931 * 93.25218 * 9 7 5 11 11 H 1.48508 * 109.47275 * 213.24893 * 9 7 5 12 12 H 1.48497 * 109.47360 * 333.25204 * 9 7 5 13 13 N 1.46898 * 109.46972 * 62.88061 * 3 2 1 14 14 C 1.46847 * 111.00024 * 58.70034 * 13 3 2 15 15 C 1.53040 * 109.52197 * 185.83865 * 14 13 3 16 16 C 1.53120 * 109.30997 * 300.80215 * 15 14 13 17 17 C 1.53194 * 109.11940 * 57.63560 * 16 15 14 18 18 H 1.09003 * 109.49588 * 182.42384 * 17 16 15 19 19 C 1.53006 * 109.52615 * 62.33665 * 17 16 15 20 20 C 1.46846 * 110.99600 * 182.90832 * 13 3 2 21 21 H 1.08997 * 109.46520 * 294.16087 * 20 13 3 22 22 C 1.52996 * 109.46210 * 54.14758 * 20 13 3 23 23 N 1.46907 * 109.47169 * 182.46943 * 22 20 13 24 24 H 1.09004 * 109.47131 * 294.92165 * 1 2 3 25 25 H 1.08998 * 109.47515 * 54.92416 * 1 2 3 26 26 H 1.09001 * 109.46709 * 174.92411 * 1 2 3 27 27 H 1.08997 * 109.47531 * 240.00429 * 2 1 3 28 28 H 1.08995 * 109.47787 * 119.99737 * 2 1 3 29 29 H 0.96996 * 119.99688 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46486 * 65.82269 * 14 13 3 31 31 H 1.09000 * 109.46398 * 305.85269 * 14 13 3 32 32 H 1.08999 * 109.50422 * 60.76188 * 15 14 13 33 33 H 1.08998 * 109.50424 * 180.83998 * 15 14 13 34 34 H 1.09003 * 109.52231 * 177.57739 * 16 15 14 35 35 H 1.09005 * 109.52119 * 297.76602 * 16 15 14 36 36 H 1.09000 * 109.47228 * 300.15622 * 19 17 16 37 37 H 1.09004 * 109.47045 * 60.16068 * 19 17 16 38 38 H 1.08996 * 109.46915 * 180.15660 * 19 17 16 39 39 H 1.08997 * 109.47223 * 302.46083 * 22 20 13 40 40 H 1.08998 * 109.47410 * 62.46606 * 22 20 13 41 41 H 1.00900 * 110.99915 * 61.35391 * 23 22 20 42 42 H 1.00897 * 111.00020 * 185.32079 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6350 1.9711 -0.8631 5 6 3.5452 1.4433 -0.0713 6 1 4.1287 1.3650 0.8340 7 6 4.1775 1.5439 -1.2925 8 7 5.4892 1.4785 -1.3612 9 14 3.1709 1.7728 -2.8493 10 1 3.0479 3.2217 -3.1507 11 1 3.8460 1.0875 -3.9807 12 1 1.8185 1.1912 -2.6544 13 7 1.6078 2.1147 1.2327 14 6 2.1103 1.4109 2.4196 15 6 1.5234 2.0505 3.6800 16 6 1.9246 3.5273 3.7323 17 6 1.4315 4.2264 2.4615 18 1 1.7512 5.2685 2.4722 19 6 -0.0960 4.1613 2.4018 20 6 2.0211 3.5238 1.2363 21 1 3.1088 3.5832 1.2723 22 6 1.5149 4.2067 -0.0357 23 7 1.9782 5.6006 -0.0607 24 1 -0.3633 0.4331 0.9320 25 1 -0.3634 0.5905 -0.8410 26 1 -0.3633 -1.0237 -0.0909 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 5.9339 1.5490 -2.2203 30 1 3.1976 1.4802 2.4498 31 1 1.8145 0.3629 2.3727 32 1 0.4366 1.9692 3.6571 33 1 1.9081 1.5374 4.5614 34 1 1.4728 3.9968 4.6061 35 1 3.0099 3.6079 3.7945 36 1 -0.4152 3.1191 2.3924 37 1 -0.5154 4.6620 3.2746 38 1 -0.4456 4.6566 1.4960 39 1 1.9003 3.6802 -0.9088 40 1 0.4252 4.1857 -0.0504 41 1 2.9861 5.6465 -0.0701 42 1 1.5862 6.0979 -0.8462 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069726913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:45 Heat of formation + Delta-G solvation = -28.453988 kcal Electronic energy + Delta-G solvation = -19510.388777 eV Core-core repulsion = 16909.766756 eV Total energy + Delta-G solvation = -2600.622021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79404 -36.86625 -35.51244 -34.20780 -32.56447 -31.75684 -28.96489 -27.63361 -25.97227 -24.87889 -23.89249 -21.95552 -20.79260 -19.68701 -18.53789 -17.56950 -16.57868 -16.14718 -16.10223 -15.54362 -15.39765 -14.94536 -14.62533 -14.54619 -14.05753 -13.84841 -13.45036 -13.39962 -13.19558 -12.91520 -12.83175 -12.49835 -12.37022 -12.14015 -11.84161 -11.72605 -11.60624 -11.59483 -11.32022 -11.14041 -10.84734 -10.77909 -10.61561 -9.51547 -8.77542 -8.32239 -6.34232 1.22115 1.28137 1.37894 2.27480 3.01266 3.29461 3.84260 3.99373 4.08221 4.19547 4.31856 4.45212 4.54367 4.56938 4.60404 4.69379 4.74064 4.86397 4.89271 4.95928 5.01317 5.08731 5.11912 5.15673 5.24661 5.28602 5.32188 5.40866 5.43681 5.46371 5.50649 5.57079 5.68115 5.71560 5.82167 6.14201 6.27027 6.48626 6.56645 6.68210 6.76631 7.33877 8.84783 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.011058 C = 0.009671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.873996 B = 2531.491725 C = 2894.481665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 C 0.175 3.825 4 H 0.044 0.956 5 C -0.524 4.524 6 H 0.029 0.971 7 C 0.020 3.980 8 N -0.949 5.949 9 Si 0.925 3.075 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.239 1.239 13 N -0.505 5.505 14 C 0.059 3.941 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.069 4.069 18 H 0.071 0.929 19 C -0.126 4.126 20 C 0.108 3.892 21 H 0.000 1.000 22 C 0.070 3.930 23 N -0.839 5.839 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.262 0.738 30 H -0.003 1.003 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.004 0.996 40 H 0.085 0.915 41 H 0.336 0.664 42 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.307 4.245 5.540 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.152 4.152 3 C 0.067 3.933 4 H 0.062 0.938 5 C -0.563 4.563 6 H 0.048 0.952 7 C -0.178 4.178 8 N -0.589 5.589 9 Si 0.750 3.250 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.162 1.162 13 N -0.229 5.229 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.152 4.152 17 C -0.088 4.088 18 H 0.090 0.910 19 C -0.183 4.183 20 C -0.002 4.002 21 H 0.018 0.982 22 C -0.061 4.061 23 N -0.369 5.369 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.016 0.984 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.103 0.897 41 H 0.147 0.853 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.073 4.294 6.146 15.070 hybrid contribution 2.227 -0.361 -2.071 3.062 sum -10.846 3.933 4.075 12.236 Atomic orbital electron populations 1.21619 0.94586 1.00621 1.01964 1.21716 0.96215 0.97378 0.99878 1.19789 0.90934 0.92188 0.90422 0.93779 1.21821 0.92888 1.48796 0.92821 0.95237 1.25776 0.95369 0.94591 1.02041 1.70079 1.10001 1.52753 1.26093 0.86077 0.80686 0.78770 0.79454 1.19743 1.21811 1.16178 1.62396 1.57454 1.01069 1.01958 1.21977 0.95628 0.98236 0.91053 1.21599 1.01777 0.95350 0.95804 1.21634 0.99349 0.96064 0.98159 1.21018 0.97000 0.98315 0.92444 0.91036 1.21665 0.93710 1.02057 1.00826 1.21231 0.95190 0.88579 0.95176 0.98152 1.21809 1.00344 0.88201 0.95720 1.58699 1.13947 1.13493 1.50714 0.91505 0.93991 0.92740 0.94717 0.93113 0.92913 0.98448 0.91190 0.89983 0.91265 0.90111 0.94605 0.92022 0.92499 0.93288 0.97771 0.89671 0.85268 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.72 71.98 0.70 -3.51 16 2 C -0.11 -4.60 5.09 30.60 0.16 -4.45 16 3 C 0.17 7.79 0.92 44.17 0.04 7.83 16 4 H 0.04 2.02 3.28 -2.39 -0.01 2.01 16 5 C -0.52 -28.88 7.38 25.60 0.19 -28.69 16 6 H 0.03 1.86 6.44 -2.91 -0.02 1.84 16 7 C 0.02 1.13 5.47 84.66 0.46 1.59 16 8 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 9 Si 0.93 43.68 25.98 68.60 1.78 45.46 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 12 H -0.24 -10.40 6.52 99.48 0.65 -9.75 16 13 N -0.50 -19.51 3.24 -850.38 -2.75 -22.26 16 14 C 0.06 2.23 4.80 86.33 0.41 2.65 16 15 C -0.11 -3.11 5.74 30.65 0.18 -2.93 16 16 C -0.11 -3.30 5.52 30.70 0.17 -3.13 16 17 C -0.07 -2.12 2.60 -10.71 -0.03 -2.15 16 18 H 0.07 2.23 7.70 -2.39 -0.02 2.21 16 19 C -0.13 -3.30 8.39 71.98 0.60 -2.70 16 20 C 0.11 4.10 1.44 44.94 0.06 4.16 16 21 H 0.00 0.02 7.38 -2.39 -0.02 0.00 16 22 C 0.07 2.51 5.55 86.30 0.48 2.99 16 23 N -0.84 -25.63 8.95 -186.71 -1.67 -27.31 16 24 H 0.07 2.04 7.84 -2.38 -0.02 2.02 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.03 1.49 8.00 -2.39 -0.02 1.47 16 28 H 0.05 2.06 6.10 -2.39 -0.01 2.05 16 29 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.00 -0.13 6.47 -2.39 -0.02 -0.14 16 31 H 0.07 2.57 5.91 -2.39 -0.01 2.55 16 32 H 0.08 2.14 6.58 -2.39 -0.02 2.13 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.06 1.68 6.01 -2.39 -0.01 1.67 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.30 6.36 -2.39 -0.02 1.29 16 39 H 0.00 0.17 4.98 -2.39 -0.01 0.16 16 40 H 0.09 2.80 6.29 -2.39 -0.02 2.78 16 41 H 0.34 10.87 9.05 -89.69 -0.81 10.06 16 42 H 0.35 8.91 9.08 -89.70 -0.81 8.10 16 Total: -1.00 -62.42 300.09 0.42 -62.00 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: -0.67 Total: 29.11 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 3.43 Total: -28.33 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -4.12 Total: -108.23 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.78 Total: 45.46 kcal Total: -62.42 0.42 -62.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069726913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.547 kcal (2) G-P(sol) polarization free energy of solvation -62.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds