Wall clock time and date at job start Mon Mar 30 2020 03:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47156 * 2 1 4 4 H 1.08997 * 109.47695 * 182.43502 * 3 2 1 5 5 C 1.50700 * 109.46802 * 62.43313 * 3 2 1 6 6 H 1.08004 * 120.00091 * 244.18670 * 5 3 2 7 7 C 1.37880 * 119.99901 * 64.19206 * 5 3 2 8 8 N 1.31513 * 119.99857 * 194.44732 * 7 5 3 9 9 Si 1.86797 * 119.99894 * 14.45298 * 7 5 3 10 10 H 1.48498 * 109.47717 * 92.21196 * 9 7 5 11 11 H 1.48506 * 109.46774 * 212.21165 * 9 7 5 12 12 H 1.48499 * 109.47259 * 332.20841 * 9 7 5 13 13 N 1.46907 * 109.47239 * 302.43767 * 3 2 1 14 14 C 1.46842 * 110.99535 * 299.87117 * 13 3 2 15 15 C 1.53039 * 109.52260 * 174.16350 * 14 13 3 16 16 H 1.08998 * 109.49964 * 299.23664 * 15 14 13 17 17 C 1.53002 * 109.50563 * 179.12015 * 15 14 13 18 18 N 1.46900 * 109.47082 * 175.19331 * 17 15 14 19 19 C 1.53120 * 109.28031 * 59.17487 * 15 14 13 20 20 C 1.53118 * 109.21410 * 302.31892 * 19 15 14 21 21 C 1.46849 * 110.99722 * 175.66359 * 13 3 2 22 22 H 1.09000 * 109.46244 * 305.83453 * 21 13 3 23 23 C 1.52993 * 109.46499 * 65.82215 * 21 13 3 24 24 H 1.09001 * 109.46914 * 175.04179 * 1 2 3 25 25 H 1.08995 * 109.47319 * 295.04911 * 1 2 3 26 26 H 1.09007 * 109.46885 * 55.04972 * 1 2 3 27 27 H 1.09009 * 109.47435 * 240.00452 * 2 1 3 28 28 H 1.08994 * 109.47282 * 119.99891 * 2 1 3 29 29 H 0.97003 * 119.99921 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.46505 * 54.14614 * 14 13 3 31 31 H 1.09003 * 109.45488 * 294.17113 * 14 13 3 32 32 H 1.08995 * 109.46913 * 295.19636 * 17 15 14 33 33 H 1.09004 * 109.47066 * 55.19596 * 17 15 14 34 34 H 1.00897 * 110.99840 * 179.97438 * 18 17 15 35 35 H 1.00901 * 111.00389 * 303.95808 * 18 17 15 36 36 H 1.09002 * 109.52308 * 62.25469 * 19 15 14 37 37 H 1.08996 * 109.52217 * 182.38035 * 19 15 14 38 38 H 1.09002 * 109.50306 * 177.62399 * 20 19 15 39 39 H 1.09000 * 109.50401 * 297.74098 * 20 19 15 40 40 H 1.09005 * 109.47128 * 59.99643 * 23 21 13 41 41 H 1.08999 * 109.47081 * 179.97438 * 23 21 13 42 42 H 1.09001 * 109.47087 * 299.99928 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4429 -0.0437 5 6 1.5875 2.1352 1.2595 6 1 0.9089 2.9733 1.2009 7 6 2.0400 1.6991 2.4868 8 7 1.4434 2.1002 3.5880 9 14 3.5004 0.5386 2.5852 10 1 4.7499 1.3268 2.7354 11 1 3.3393 -0.3615 3.7554 12 1 3.5729 -0.2723 1.3433 13 7 1.5028 2.1518 -1.1689 14 6 1.9267 1.5052 -2.4173 15 6 1.2338 2.1797 -3.6035 16 1 0.1537 2.0740 -3.5021 17 6 1.6925 1.5201 -4.9056 18 7 0.9425 2.0890 -6.0334 19 6 1.6021 3.6658 -3.6259 20 6 1.1937 4.3062 -2.2964 21 6 1.8880 3.5688 -1.1474 22 1 1.5880 4.0123 -0.1980 23 6 3.4048 3.6872 -1.3089 24 1 -0.3633 -1.0238 -0.0888 25 1 -0.3634 0.4351 0.9309 26 1 -0.3633 0.5888 -0.8424 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.7619 1.7937 4.4515 30 1 1.6551 0.4500 -2.3902 31 1 3.0072 1.5995 -2.5263 32 1 2.7576 1.7014 -5.0492 33 1 1.5105 0.4466 -4.8529 34 1 1.2277 1.6696 -6.9056 35 1 -0.0518 1.9910 -5.8927 36 1 2.6778 3.7724 -3.7663 37 1 1.0773 4.1588 -4.4442 38 1 1.4918 5.3547 -2.2908 39 1 0.1129 4.2340 -2.1745 40 1 3.7049 3.2434 -2.2582 41 1 3.6908 4.7389 -1.2934 42 1 3.8993 3.1638 -0.4907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069728818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:18 Heat of formation + Delta-G solvation = -4.278587 kcal Electronic energy + Delta-G solvation = -19074.775297 eV Core-core repulsion = 16475.201600 eV Total energy + Delta-G solvation = -2599.573697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.36572 -35.84263 -34.13514 -31.99274 -30.98798 -30.31799 -27.27255 -26.65922 -24.05771 -23.21584 -22.85571 -20.65895 -19.41361 -18.02842 -16.32005 -16.01547 -15.30094 -14.67499 -14.61301 -14.38506 -14.15881 -13.18478 -13.15621 -12.98317 -12.59365 -12.44251 -12.16799 -12.03843 -11.80968 -11.26643 -11.13764 -11.01634 -10.77993 -10.50520 -10.43589 -10.16903 -10.03190 -10.01685 -9.78528 -9.39441 -9.22988 -8.85317 -8.68306 -8.39967 -7.16512 -6.06059 -3.98524 3.27648 3.37289 3.39993 4.43884 4.48632 4.81530 5.13270 5.24308 5.27607 5.35676 5.63242 5.65536 5.79089 5.89369 5.92477 6.05689 6.11111 6.16193 6.22710 6.26945 6.31255 6.33566 6.46394 6.51748 6.55763 6.60460 6.73517 6.80610 6.86521 7.02849 7.08107 7.12154 7.19602 7.28623 7.38098 7.52618 7.75166 8.06750 8.22475 8.72220 9.04783 9.60205 11.06722 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.007887 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.252897 B = 3549.180525 C = 3833.475926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.116 4.116 3 C 0.189 3.811 4 H -0.006 1.006 5 C -0.500 4.500 6 H 0.081 0.919 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.856 3.144 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.254 1.254 13 N -0.511 5.511 14 C 0.052 3.948 15 C -0.079 4.079 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.849 5.849 19 C -0.102 4.102 20 C -0.113 4.113 21 C 0.087 3.913 22 H 0.098 0.902 23 C -0.181 4.181 24 H 0.018 0.982 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.052 0.948 29 H 0.262 0.738 30 H 0.068 0.932 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.336 0.664 35 H 0.339 0.661 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 -0.858 -14.645 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 C 0.082 3.918 4 H 0.011 0.989 5 C -0.538 4.538 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.179 1.179 13 N -0.235 5.235 14 C -0.077 4.077 15 C -0.099 4.099 16 H 0.091 0.909 17 C -0.065 4.065 18 N -0.378 5.378 19 C -0.140 4.140 20 C -0.151 4.151 21 C -0.021 4.021 22 H 0.116 0.884 23 C -0.240 4.240 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.603 -0.215 -14.185 14.200 hybrid contribution 1.488 -1.677 0.107 2.245 sum 2.092 -1.892 -14.078 14.358 Atomic orbital electron populations 1.21473 0.95734 0.97781 1.03201 1.21937 0.97063 0.97928 0.98494 1.19604 0.92052 0.90842 0.89292 0.98896 1.20852 1.28436 1.16575 0.87905 0.90133 1.24832 0.96311 0.95725 0.95727 1.69957 1.39375 1.45951 0.97858 0.87349 0.84305 0.81817 0.78178 1.20943 1.21440 1.17872 1.61999 1.59265 1.01280 1.00910 1.22095 0.96625 0.98396 0.90596 1.21149 1.00697 0.95608 0.92398 0.90941 1.21825 0.98255 0.95473 0.90962 1.58690 1.09655 1.64871 1.04551 1.21490 1.00478 0.94774 0.97221 1.21675 1.00821 0.98045 0.94553 1.21609 0.91723 0.89639 0.99171 0.88395 1.22424 0.99368 1.00999 1.01174 0.96330 0.91613 0.92589 0.95571 0.92907 0.92820 0.91414 0.95719 0.91479 0.95819 0.85257 0.84848 0.92853 0.91871 0.92597 0.91767 0.93312 0.93355 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.50 37.16 0.35 -2.24 16 2 C -0.12 -2.53 4.57 -26.73 -0.12 -2.65 16 3 C 0.19 4.34 0.93 -68.86 -0.06 4.27 16 4 H -0.01 -0.15 5.40 -51.93 -0.28 -0.43 16 5 C -0.50 -13.37 7.14 -34.44 -0.25 -13.62 16 6 H 0.08 2.37 6.81 -52.48 -0.36 2.01 16 7 C 0.08 2.12 5.35 -17.82 -0.10 2.03 16 8 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 9 Si 0.86 21.04 25.80 -169.99 -4.39 16.65 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.25 -5.92 5.36 56.52 0.30 -5.62 16 13 N -0.51 -10.15 3.51 -220.06 -0.77 -10.92 16 14 C 0.05 0.88 4.21 -3.84 -0.02 0.86 16 15 C -0.08 -1.13 2.50 -90.54 -0.23 -1.35 16 16 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 17 C 0.07 0.78 6.18 -3.82 -0.02 0.76 16 18 N -0.85 -8.66 9.13 -10.37 -0.09 -8.75 16 19 C -0.10 -1.46 4.83 -26.61 -0.13 -1.58 16 20 C -0.11 -1.79 5.63 -26.58 -0.15 -1.94 16 21 C 0.09 1.65 2.67 -67.65 -0.18 1.47 16 22 H 0.10 2.14 6.10 -51.93 -0.32 1.83 16 23 C -0.18 -3.22 8.18 37.15 0.30 -2.91 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 1.54 7.47 -51.93 -0.39 1.15 16 26 H 0.06 1.13 7.38 -51.92 -0.38 0.74 16 27 H 0.03 0.51 6.41 -51.92 -0.33 0.18 16 28 H 0.05 1.22 4.73 -51.93 -0.25 0.97 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.07 1.16 6.06 -51.93 -0.31 0.84 16 31 H 0.02 0.43 6.19 -51.93 -0.32 0.11 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.34 2.77 9.08 -39.29 -0.36 2.41 16 35 H 0.34 3.19 8.99 -39.29 -0.35 2.84 16 36 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 37 H 0.06 0.87 7.83 -51.93 -0.41 0.46 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.80 4.80 -51.93 -0.25 0.55 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.19 6.64 -51.93 -0.34 0.84 16 LS Contribution 299.39 15.07 4.51 4.51 Total: -1.00 -28.29 299.39 -7.75 -36.03 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.18 Total: 5.28 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -0.60 Total: -16.90 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.09 Total: -45.58 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.39 Total: 16.65 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.29 -7.75 -36.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069728818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.755 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds