Wall clock time and date at job start Mon Mar 30 2020 03:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47156 * 2 1 4 4 H 1.08997 * 109.47695 * 182.43502 * 3 2 1 5 5 C 1.50700 * 109.46802 * 62.43313 * 3 2 1 6 6 H 1.08004 * 120.00091 * 244.18670 * 5 3 2 7 7 C 1.37880 * 119.99901 * 64.19206 * 5 3 2 8 8 N 1.31513 * 119.99857 * 194.44732 * 7 5 3 9 9 Si 1.86797 * 119.99894 * 14.45298 * 7 5 3 10 10 H 1.48498 * 109.47717 * 92.21196 * 9 7 5 11 11 H 1.48506 * 109.46774 * 212.21165 * 9 7 5 12 12 H 1.48499 * 109.47259 * 332.20841 * 9 7 5 13 13 N 1.46907 * 109.47239 * 302.43767 * 3 2 1 14 14 C 1.46842 * 110.99535 * 299.87117 * 13 3 2 15 15 C 1.53039 * 109.52260 * 174.16350 * 14 13 3 16 16 H 1.08998 * 109.49964 * 299.23664 * 15 14 13 17 17 C 1.53002 * 109.50563 * 179.12015 * 15 14 13 18 18 N 1.46900 * 109.47082 * 175.19331 * 17 15 14 19 19 C 1.53120 * 109.28031 * 59.17487 * 15 14 13 20 20 C 1.53118 * 109.21410 * 302.31892 * 19 15 14 21 21 C 1.46849 * 110.99722 * 175.66359 * 13 3 2 22 22 H 1.09000 * 109.46244 * 305.83453 * 21 13 3 23 23 C 1.52993 * 109.46499 * 65.82215 * 21 13 3 24 24 H 1.09001 * 109.46914 * 175.04179 * 1 2 3 25 25 H 1.08995 * 109.47319 * 295.04911 * 1 2 3 26 26 H 1.09007 * 109.46885 * 55.04972 * 1 2 3 27 27 H 1.09009 * 109.47435 * 240.00452 * 2 1 3 28 28 H 1.08994 * 109.47282 * 119.99891 * 2 1 3 29 29 H 0.97003 * 119.99921 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.46505 * 54.14614 * 14 13 3 31 31 H 1.09003 * 109.45488 * 294.17113 * 14 13 3 32 32 H 1.08995 * 109.46913 * 295.19636 * 17 15 14 33 33 H 1.09004 * 109.47066 * 55.19596 * 17 15 14 34 34 H 1.00897 * 110.99840 * 179.97438 * 18 17 15 35 35 H 1.00901 * 111.00389 * 303.95808 * 18 17 15 36 36 H 1.09002 * 109.52308 * 62.25469 * 19 15 14 37 37 H 1.08996 * 109.52217 * 182.38035 * 19 15 14 38 38 H 1.09002 * 109.50306 * 177.62399 * 20 19 15 39 39 H 1.09000 * 109.50401 * 297.74098 * 20 19 15 40 40 H 1.09005 * 109.47128 * 59.99643 * 23 21 13 41 41 H 1.08999 * 109.47081 * 179.97438 * 23 21 13 42 42 H 1.09001 * 109.47087 * 299.99928 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4429 -0.0437 5 6 1.5875 2.1352 1.2595 6 1 0.9089 2.9733 1.2009 7 6 2.0400 1.6991 2.4868 8 7 1.4434 2.1002 3.5880 9 14 3.5004 0.5386 2.5852 10 1 4.7499 1.3268 2.7354 11 1 3.3393 -0.3615 3.7554 12 1 3.5729 -0.2723 1.3433 13 7 1.5028 2.1518 -1.1689 14 6 1.9267 1.5052 -2.4173 15 6 1.2338 2.1797 -3.6035 16 1 0.1537 2.0740 -3.5021 17 6 1.6925 1.5201 -4.9056 18 7 0.9425 2.0890 -6.0334 19 6 1.6021 3.6658 -3.6259 20 6 1.1937 4.3062 -2.2964 21 6 1.8880 3.5688 -1.1474 22 1 1.5880 4.0123 -0.1980 23 6 3.4048 3.6872 -1.3089 24 1 -0.3633 -1.0238 -0.0888 25 1 -0.3634 0.4351 0.9309 26 1 -0.3633 0.5888 -0.8424 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.7619 1.7937 4.4515 30 1 1.6551 0.4500 -2.3902 31 1 3.0072 1.5995 -2.5263 32 1 2.7576 1.7014 -5.0492 33 1 1.5105 0.4466 -4.8529 34 1 1.2277 1.6696 -6.9056 35 1 -0.0518 1.9910 -5.8927 36 1 2.6778 3.7724 -3.7663 37 1 1.0773 4.1588 -4.4442 38 1 1.4918 5.3547 -2.2908 39 1 0.1129 4.2340 -2.1745 40 1 3.7049 3.2434 -2.2582 41 1 3.6908 4.7389 -1.2934 42 1 3.8993 3.1638 -0.4907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069728818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:18 Heat of formation + Delta-G solvation = -24.286045 kcal Electronic energy + Delta-G solvation = -19075.642886 eV Core-core repulsion = 16475.201600 eV Total energy + Delta-G solvation = -2600.441286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.80814 -37.22770 -35.51231 -34.02218 -32.18409 -31.83345 -28.97094 -28.20626 -25.46358 -24.80562 -24.30629 -21.94574 -21.07793 -19.50486 -18.30760 -17.45612 -16.46582 -16.19348 -16.06726 -15.71121 -15.47582 -14.87808 -14.67455 -14.58084 -14.27239 -13.86957 -13.54705 -13.47380 -13.09469 -12.89489 -12.72732 -12.68306 -12.36976 -12.28021 -11.87892 -11.85226 -11.71916 -11.41218 -11.23044 -11.11969 -10.77754 -10.69885 -10.48921 -9.48521 -8.76592 -8.23961 -6.18975 1.30478 1.35505 1.43011 2.36527 3.09330 3.25377 3.75249 3.94822 4.07627 4.14192 4.36865 4.40370 4.43454 4.53114 4.59023 4.66706 4.71369 4.72642 4.76456 4.79078 4.89353 5.00279 5.04521 5.11008 5.15119 5.23953 5.27851 5.33239 5.41363 5.44259 5.45687 5.57023 5.70626 5.77013 5.85129 6.15580 6.30562 6.55257 6.70050 6.84746 6.88129 7.43184 8.92643 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.007887 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.252897 B = 3549.180525 C = 3833.475926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C 0.194 3.806 4 H -0.014 1.014 5 C -0.487 4.487 6 H 0.038 0.962 7 C 0.021 3.979 8 N -0.944 5.944 9 Si 0.913 3.087 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.229 1.229 13 N -0.520 5.520 14 C 0.053 3.947 15 C -0.072 4.072 16 H 0.065 0.935 17 C 0.075 3.925 18 N -0.852 5.852 19 C -0.093 4.093 20 C -0.106 4.106 21 C 0.084 3.916 22 H 0.055 0.945 23 C -0.172 4.172 24 H 0.047 0.953 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.262 0.738 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.349 0.651 35 H 0.345 0.655 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 -2.009 -17.660 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.156 4.156 3 C 0.086 3.914 4 H 0.003 0.997 5 C -0.525 4.525 6 H 0.056 0.944 7 C -0.176 4.176 8 N -0.584 5.584 9 Si 0.738 3.262 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.152 1.152 13 N -0.244 5.244 14 C -0.076 4.076 15 C -0.092 4.092 16 H 0.084 0.916 17 C -0.057 4.057 18 N -0.382 5.382 19 C -0.130 4.130 20 C -0.144 4.144 21 C -0.025 4.025 22 H 0.073 0.927 23 C -0.231 4.231 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.505 -1.371 -17.246 17.366 hybrid contribution 1.125 -1.224 1.011 1.946 sum 2.630 -2.595 -16.235 16.650 Atomic orbital electron populations 1.21341 0.95176 0.99327 1.01285 1.21906 0.97565 0.96864 0.99240 1.19425 0.91493 0.91623 0.88855 0.99654 1.21010 1.26588 1.15069 0.89881 0.94352 1.25568 0.98865 0.97835 0.95377 1.70097 1.41428 1.48409 0.98497 0.86416 0.80608 0.80088 0.79056 1.20975 1.21504 1.15227 1.61933 1.59482 1.01664 1.01312 1.22178 0.97010 0.98549 0.89854 1.21072 0.99986 0.95503 0.92609 0.91610 1.21658 0.98399 0.95575 0.90060 1.58635 1.09990 1.64929 1.04679 1.21421 1.00745 0.94707 0.96144 1.21606 0.99862 0.98607 0.94281 1.21554 0.92980 0.89363 0.98556 0.92721 1.22330 0.97998 1.01849 1.00926 0.93411 0.95385 0.92174 0.92574 0.94189 0.92936 0.91136 0.95534 0.91322 0.95160 0.83740 0.84247 0.92466 0.90647 0.91208 0.92695 0.91445 0.91828 0.94963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.61 9.50 71.98 0.68 -3.93 16 2 C -0.12 -4.93 4.57 30.59 0.14 -4.79 16 3 C 0.19 8.85 0.93 44.17 0.04 8.89 16 4 H -0.01 -0.65 5.40 -2.39 -0.01 -0.67 16 5 C -0.49 -27.06 7.14 25.60 0.18 -26.88 16 6 H 0.04 2.41 6.81 -2.91 -0.02 2.39 16 7 C 0.02 1.20 5.35 84.66 0.45 1.65 16 8 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 9 Si 0.91 43.83 25.80 68.60 1.77 45.60 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.23 -10.00 5.36 99.48 0.53 -9.47 16 13 N -0.52 -20.37 3.51 -850.13 -2.98 -23.35 16 14 C 0.05 1.64 4.21 86.33 0.36 2.01 16 15 C -0.07 -1.85 2.50 -10.74 -0.03 -1.87 16 16 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 17 C 0.07 1.49 6.18 86.30 0.53 2.02 16 18 N -0.85 -14.26 9.13 -186.72 -1.70 -15.96 16 19 C -0.09 -2.37 4.83 30.67 0.15 -2.22 16 20 C -0.11 -3.21 5.63 30.69 0.17 -3.04 16 21 C 0.08 3.19 2.67 44.98 0.12 3.31 16 22 H 0.05 2.53 6.10 -2.39 -0.01 2.51 16 23 C -0.17 -5.96 8.18 71.98 0.59 -5.37 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.31 7.47 -2.39 -0.02 1.29 16 26 H 0.06 2.35 7.38 -2.38 -0.02 2.33 16 27 H 0.06 2.03 6.41 -2.38 -0.02 2.01 16 28 H 0.04 1.77 4.73 -2.39 -0.01 1.76 16 29 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.07 2.17 6.06 -2.39 -0.01 2.16 16 31 H 0.03 0.83 6.19 -2.39 -0.01 0.82 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.35 4.46 9.08 -89.70 -0.81 3.64 16 35 H 0.34 5.30 8.99 -89.69 -0.81 4.50 16 36 H 0.06 1.45 6.56 -2.39 -0.02 1.43 16 37 H 0.07 1.81 7.83 -2.39 -0.02 1.79 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 2.06 4.80 -2.38 -0.01 2.05 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.03 1.27 6.64 -2.39 -0.02 1.25 16 Total: -1.00 -63.00 299.39 0.00 -63.00 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.78 Total: 19.43 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 3.40 Total: -30.23 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -4.39 Total: -97.80 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.77 Total: 45.60 kcal Total: -63.00 0.00 -63.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069728818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.716 kcal (2) G-P(sol) polarization free energy of solvation -63.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds