Wall clock time and date at job start Mon Mar 30 2020 03:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47452 * 2 1 4 4 H 1.08998 * 109.47337 * 182.86899 * 3 2 1 5 5 C 1.50699 * 109.47248 * 62.86650 * 3 2 1 6 6 H 1.08009 * 119.99643 * 240.00281 * 5 3 2 7 7 C 1.37877 * 120.00246 * 60.27934 * 5 3 2 8 8 N 1.31513 * 119.99547 * 359.71766 * 7 5 3 9 9 Si 1.86802 * 119.99932 * 179.72770 * 7 5 3 10 10 H 1.48494 * 109.47194 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46996 * 119.99898 * 9 7 5 12 12 H 1.48504 * 109.46689 * 239.99447 * 9 7 5 13 13 N 1.46906 * 109.46959 * 302.86464 * 3 2 1 14 14 C 1.46905 * 110.99706 * 174.96994 * 13 3 2 15 15 C 1.46901 * 110.99757 * 298.92491 * 13 3 2 16 16 C 1.52998 * 109.46718 * 161.98588 * 15 13 3 17 17 H 1.09000 * 110.64973 * 311.36550 * 16 15 13 18 18 C 1.54598 * 110.72376 * 188.21234 * 16 15 13 19 19 C 1.53992 * 105.14159 * 219.68669 * 18 16 15 20 20 N 1.47911 * 107.05874 * 358.77588 * 19 18 16 21 21 C 1.46898 * 110.99621 * 145.84422 * 20 19 18 22 22 C 1.48530 * 105.81925 * 25.32960 * 20 19 18 23 23 H 1.08995 * 109.47580 * 184.11207 * 1 2 3 24 24 H 1.09004 * 109.47296 * 304.12023 * 1 2 3 25 25 H 1.09002 * 109.46786 * 64.11036 * 1 2 3 26 26 H 1.08995 * 109.47279 * 239.99433 * 2 1 3 27 27 H 1.09007 * 109.46641 * 119.99720 * 2 1 3 28 28 H 0.97006 * 119.99565 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46746 * 76.64743 * 14 13 3 30 30 H 1.09001 * 109.46794 * 196.64191 * 14 13 3 31 31 H 1.08988 * 109.47354 * 316.64622 * 14 13 3 32 32 H 1.09001 * 109.47110 * 281.98576 * 15 13 3 33 33 H 1.09000 * 109.47105 * 41.99176 * 15 13 3 34 34 H 1.08993 * 110.30855 * 338.60108 * 18 16 15 35 35 H 1.08998 * 110.30515 * 100.77187 * 18 16 15 36 36 H 1.08994 * 109.91938 * 118.12586 * 19 18 16 37 37 H 1.09000 * 109.91772 * 239.22994 * 19 18 16 38 38 H 1.08997 * 109.47202 * 60.13026 * 21 20 19 39 39 H 1.09004 * 109.46591 * 180.12980 * 21 20 19 40 40 H 1.09000 * 109.47386 * 300.12085 * 21 20 19 41 41 H 1.09002 * 110.67070 * 202.35995 * 22 20 19 42 42 H 1.08995 * 110.66743 * 79.22544 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1288 1.4428 -0.0514 5 6 1.5966 2.1321 1.2644 6 1 0.9720 3.0115 1.2093 7 6 1.9929 1.6438 2.4914 8 7 2.7533 0.5728 2.5584 9 14 1.4494 2.5031 4.0585 10 1 0.6062 3.6756 3.7131 11 1 0.6661 1.5586 4.8948 12 1 2.6446 2.9585 4.8132 13 7 1.4947 2.1546 -1.1634 14 6 1.8664 3.5755 -1.1325 15 6 1.9282 1.5241 -2.4173 16 6 1.0176 1.9805 -3.5590 17 1 -0.0307 1.8818 -3.2774 18 6 1.3152 1.1817 -4.8488 19 6 1.2253 2.2120 -5.9897 20 7 0.8663 3.5090 -5.3759 21 6 1.5007 4.6237 -6.0920 22 6 1.3438 3.4381 -3.9712 23 1 -0.3634 -1.0249 0.0737 24 1 -0.3634 0.5765 0.8508 25 1 -0.3633 0.4487 -0.9246 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.0317 0.2290 3.4217 29 1 2.9071 3.6855 -1.4376 30 1 1.2265 4.1334 -1.8162 31 1 1.7416 3.9619 -0.1211 32 1 2.9561 1.8150 -2.6339 33 1 1.8706 0.4402 -2.3179 34 1 2.3158 0.7519 -4.8052 35 1 0.5713 0.3972 -4.9879 36 1 2.1885 2.2935 -6.4932 37 1 0.4580 1.9104 -6.7028 38 1 1.1669 4.6259 -7.1296 39 1 1.2219 5.5651 -5.6186 40 1 2.5840 4.5073 -6.0590 41 1 0.8013 4.1457 -3.3443 42 1 2.4170 3.6213 -3.9200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070822054.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:37 Heat of formation + Delta-G solvation = 10.849709 kcal Electronic energy + Delta-G solvation = -18480.403806 eV Core-core repulsion = 15881.486121 eV Total energy + Delta-G solvation = -2598.917685 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.14677 -36.94478 -33.45568 -31.93630 -30.93686 -28.95609 -27.14121 -26.15280 -25.12122 -23.32042 -21.76444 -20.89560 -19.89619 -18.80763 -16.12877 -16.05059 -15.34716 -15.10495 -14.44592 -14.01184 -13.80202 -13.60733 -13.33843 -12.93478 -12.48844 -12.12975 -11.87919 -11.82451 -11.63746 -11.56592 -11.21972 -11.02225 -10.94381 -10.86961 -10.49017 -10.28083 -10.19030 -10.06567 -9.89040 -9.56728 -9.32221 -8.73785 -8.40076 -8.38226 -7.09664 -5.99158 -4.02466 3.30186 3.38578 3.42560 4.09359 4.42018 4.79920 4.81683 4.99482 5.19413 5.32576 5.36925 5.41037 5.53116 5.66255 5.78147 5.80681 5.89578 5.92318 6.01408 6.14787 6.17294 6.32834 6.34440 6.47988 6.60250 6.66102 6.68131 6.81328 6.88570 6.98523 7.08361 7.18422 7.37579 7.45973 7.70249 7.80201 7.85346 8.22947 8.38127 8.64928 9.03615 9.61460 11.07322 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038854 B = 0.005839 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.472670 B = 4794.348206 C = 5212.254392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 C 0.215 3.785 4 H -0.006 1.006 5 C -0.496 4.496 6 H 0.064 0.936 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.531 5.531 14 C 0.024 3.976 15 C 0.059 3.941 16 C -0.080 4.080 17 H 0.090 0.910 18 C -0.128 4.128 19 C 0.037 3.963 20 N -0.527 5.527 21 C 0.017 3.983 22 C 0.038 3.962 23 H 0.014 0.986 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.013 0.987 27 H 0.091 0.909 28 H 0.259 0.741 29 H 0.005 0.995 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.018 0.982 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.024 0.976 41 H 0.090 0.910 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 3.039 -13.441 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C 0.109 3.891 4 H 0.012 0.988 5 C -0.535 4.535 6 H 0.082 0.918 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.255 5.255 14 C -0.124 4.124 15 C -0.070 4.070 16 C -0.100 4.100 17 H 0.108 0.892 18 C -0.167 4.167 19 C -0.091 4.091 20 N -0.250 5.250 21 C -0.132 4.132 22 C -0.089 4.089 23 H 0.033 0.967 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.031 0.969 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.108 0.892 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.494 2.998 -13.304 13.863 hybrid contribution 1.671 0.342 0.807 1.887 sum -0.822 3.340 -12.497 12.961 Atomic orbital electron populations 1.21453 0.97256 0.97503 1.01537 1.21578 0.95175 0.98229 0.99948 1.19267 0.92212 0.90865 0.86780 0.98794 1.21142 1.30676 1.11909 0.89741 0.91791 1.24907 0.95213 0.95098 0.98961 1.69893 1.36125 1.22539 1.24639 0.86527 0.78311 0.79655 0.83455 1.19749 1.21062 1.21266 1.62057 1.59801 1.01856 1.01745 1.22567 0.96270 0.90746 1.02818 1.22171 0.94529 0.99986 0.90335 1.22087 1.01627 0.92925 0.93357 0.89182 1.22454 1.01841 0.97929 0.94469 1.22840 0.99124 0.89958 0.97213 1.64774 1.54896 1.02403 1.02969 1.22485 0.96454 0.95151 0.99099 1.23624 0.98033 0.98643 0.88551 0.96657 0.92340 0.93959 0.96874 0.89036 0.93117 0.97673 0.93044 0.90184 0.96366 0.90607 0.91660 0.91032 0.94298 0.90755 0.91740 0.91388 0.95714 0.89166 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.52 37.16 0.35 -2.28 16 2 C -0.11 -2.64 5.16 -26.74 -0.14 -2.78 16 3 C 0.21 5.30 1.76 -68.86 -0.12 5.18 16 4 H -0.01 -0.15 8.14 -51.93 -0.42 -0.58 16 5 C -0.50 -13.18 6.51 -34.44 -0.22 -13.40 16 6 H 0.06 1.71 6.46 -52.48 -0.34 1.37 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -25.12 11.31 55.43 0.63 -24.50 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 N -0.53 -11.09 3.76 -236.28 -0.89 -11.98 16 14 C 0.02 0.47 8.60 60.07 0.52 0.99 16 15 C 0.06 1.06 4.42 -3.82 -0.02 1.04 16 16 C -0.08 -1.23 3.22 -88.75 -0.29 -1.51 16 17 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 18 C -0.13 -1.64 6.51 -25.37 -0.17 -1.81 16 19 C 0.04 0.44 6.70 -2.75 -0.02 0.42 16 20 N -0.53 -6.97 5.55 -238.71 -1.33 -8.30 16 21 C 0.02 0.19 9.40 60.06 0.56 0.75 16 22 C 0.04 0.55 4.43 -1.89 -0.01 0.55 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 1.39 7.18 -51.93 -0.37 1.02 16 25 H 0.04 0.88 7.67 -51.93 -0.40 0.48 16 26 H 0.01 0.28 6.23 -51.93 -0.32 -0.04 16 27 H 0.09 2.44 6.01 -51.92 -0.31 2.13 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.00 0.09 7.82 -51.93 -0.41 -0.31 16 30 H 0.05 0.88 5.00 -51.93 -0.26 0.62 16 31 H 0.08 1.70 5.74 -51.94 -0.30 1.41 16 32 H 0.02 0.33 7.59 -51.93 -0.39 -0.06 16 33 H 0.08 1.41 5.68 -51.93 -0.29 1.12 16 34 H 0.06 0.81 7.85 -51.93 -0.41 0.41 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.43 7.73 -51.93 -0.40 0.03 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.02 0.26 8.00 -51.93 -0.42 -0.15 16 41 H 0.09 1.36 5.93 -51.93 -0.31 1.05 16 42 H 0.04 0.60 7.72 -51.93 -0.40 0.20 16 LS Contribution 310.89 15.07 4.69 4.69 Total: -1.00 -27.48 310.89 -8.99 -36.47 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.43 Total: -1.12 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 0.36 Total: -11.35 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -1.59 Total: -44.78 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.48 -8.99 -36.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070822054.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.319 kcal (2) G-P(sol) polarization free energy of solvation -27.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds