Wall clock time and date at job start Mon Mar 30 2020 03:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47452 * 2 1 4 4 H 1.08998 * 109.47337 * 182.86899 * 3 2 1 5 5 C 1.50699 * 109.47248 * 62.86650 * 3 2 1 6 6 H 1.08009 * 119.99643 * 240.00281 * 5 3 2 7 7 C 1.37877 * 120.00246 * 60.27934 * 5 3 2 8 8 N 1.31513 * 119.99547 * 359.71766 * 7 5 3 9 9 Si 1.86802 * 119.99932 * 179.72770 * 7 5 3 10 10 H 1.48494 * 109.47194 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46996 * 119.99898 * 9 7 5 12 12 H 1.48504 * 109.46689 * 239.99447 * 9 7 5 13 13 N 1.46906 * 109.46959 * 302.86464 * 3 2 1 14 14 C 1.46905 * 110.99706 * 174.96994 * 13 3 2 15 15 C 1.46901 * 110.99757 * 298.92491 * 13 3 2 16 16 C 1.52998 * 109.46718 * 161.98588 * 15 13 3 17 17 H 1.09000 * 110.64973 * 311.36550 * 16 15 13 18 18 C 1.54598 * 110.72376 * 188.21234 * 16 15 13 19 19 C 1.53992 * 105.14159 * 219.68669 * 18 16 15 20 20 N 1.47911 * 107.05874 * 358.77588 * 19 18 16 21 21 C 1.46898 * 110.99621 * 145.84422 * 20 19 18 22 22 C 1.48530 * 105.81925 * 25.32960 * 20 19 18 23 23 H 1.08995 * 109.47580 * 184.11207 * 1 2 3 24 24 H 1.09004 * 109.47296 * 304.12023 * 1 2 3 25 25 H 1.09002 * 109.46786 * 64.11036 * 1 2 3 26 26 H 1.08995 * 109.47279 * 239.99433 * 2 1 3 27 27 H 1.09007 * 109.46641 * 119.99720 * 2 1 3 28 28 H 0.97006 * 119.99565 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46746 * 76.64743 * 14 13 3 30 30 H 1.09001 * 109.46794 * 196.64191 * 14 13 3 31 31 H 1.08988 * 109.47354 * 316.64622 * 14 13 3 32 32 H 1.09001 * 109.47110 * 281.98576 * 15 13 3 33 33 H 1.09000 * 109.47105 * 41.99176 * 15 13 3 34 34 H 1.08993 * 110.30855 * 338.60108 * 18 16 15 35 35 H 1.08998 * 110.30515 * 100.77187 * 18 16 15 36 36 H 1.08994 * 109.91938 * 118.12586 * 19 18 16 37 37 H 1.09000 * 109.91772 * 239.22994 * 19 18 16 38 38 H 1.08997 * 109.47202 * 60.13026 * 21 20 19 39 39 H 1.09004 * 109.46591 * 180.12980 * 21 20 19 40 40 H 1.09000 * 109.47386 * 300.12085 * 21 20 19 41 41 H 1.09002 * 110.67070 * 202.35995 * 22 20 19 42 42 H 1.08995 * 110.66743 * 79.22544 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1288 1.4428 -0.0514 5 6 1.5966 2.1321 1.2644 6 1 0.9720 3.0115 1.2093 7 6 1.9929 1.6438 2.4914 8 7 2.7533 0.5728 2.5584 9 14 1.4494 2.5031 4.0585 10 1 0.6062 3.6756 3.7131 11 1 0.6661 1.5586 4.8948 12 1 2.6446 2.9585 4.8132 13 7 1.4947 2.1546 -1.1634 14 6 1.8664 3.5755 -1.1325 15 6 1.9282 1.5241 -2.4173 16 6 1.0176 1.9805 -3.5590 17 1 -0.0307 1.8818 -3.2774 18 6 1.3152 1.1817 -4.8488 19 6 1.2253 2.2120 -5.9897 20 7 0.8663 3.5090 -5.3759 21 6 1.5007 4.6237 -6.0920 22 6 1.3438 3.4381 -3.9712 23 1 -0.3634 -1.0249 0.0737 24 1 -0.3634 0.5765 0.8508 25 1 -0.3633 0.4487 -0.9246 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.0317 0.2290 3.4217 29 1 2.9071 3.6855 -1.4376 30 1 1.2265 4.1334 -1.8162 31 1 1.7416 3.9619 -0.1211 32 1 2.9561 1.8150 -2.6339 33 1 1.8706 0.4402 -2.3179 34 1 2.3158 0.7519 -4.8052 35 1 0.5713 0.3972 -4.9879 36 1 2.1885 2.2935 -6.4932 37 1 0.4580 1.9104 -6.7028 38 1 1.1669 4.6259 -7.1296 39 1 1.2219 5.5651 -5.6186 40 1 2.5840 4.5073 -6.0590 41 1 0.8013 4.1457 -3.3443 42 1 2.4170 3.6213 -3.9200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070822054.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:36 Heat of formation + Delta-G solvation = -6.556477 kcal Electronic energy + Delta-G solvation = -18481.158595 eV Core-core repulsion = 15881.486121 eV Total energy + Delta-G solvation = -2599.672474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.35581 -38.54479 -35.17227 -33.36510 -32.73034 -30.17738 -28.54607 -27.97939 -26.42464 -24.98174 -23.41108 -21.95582 -21.17593 -20.58555 -18.06184 -17.28234 -17.10547 -16.33868 -15.98252 -15.41053 -15.24632 -15.13486 -14.57265 -14.42458 -13.93044 -13.79556 -13.57409 -13.08667 -12.98944 -12.90095 -12.81460 -12.67230 -12.34973 -12.20601 -12.10708 -11.95509 -11.75944 -11.63635 -11.39010 -11.26482 -11.13526 -10.70670 -10.42938 -9.38777 -8.85048 -8.06779 -6.16255 1.41403 1.44372 1.54951 2.44460 3.07279 3.21769 3.43664 3.72866 3.84834 4.10405 4.30066 4.46659 4.49646 4.52702 4.55681 4.58892 4.64871 4.68759 4.76124 4.79087 4.83352 4.95577 4.96640 4.99006 5.00965 5.13738 5.23339 5.31646 5.33776 5.42949 5.49808 5.54686 5.75941 5.81386 5.91547 5.94313 6.11983 6.34079 6.45562 6.81366 6.98050 7.51396 8.99053 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038854 B = 0.005839 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.472670 B = 4794.348206 C = 5212.254392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C 0.220 3.780 4 H -0.047 1.047 5 C -0.503 4.503 6 H 0.059 0.941 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.533 5.533 14 C 0.030 3.970 15 C 0.064 3.936 16 C -0.076 4.076 17 H 0.079 0.921 18 C -0.124 4.124 19 C 0.038 3.962 20 N -0.538 5.538 21 C 0.016 3.984 22 C 0.044 3.956 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.259 0.741 29 H 0.005 0.995 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.014 0.986 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.026 0.974 41 H 0.082 0.918 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 3.520 -14.900 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.145 4.145 3 C 0.113 3.887 4 H -0.030 1.030 5 C -0.542 4.542 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.257 5.257 14 C -0.119 4.119 15 C -0.065 4.065 16 C -0.095 4.095 17 H 0.097 0.903 18 C -0.163 4.163 19 C -0.090 4.090 20 N -0.262 5.262 21 C -0.133 4.133 22 C -0.083 4.083 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.100 0.900 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.408 3.491 -14.786 15.570 hybrid contribution 1.982 0.204 1.191 2.321 sum -1.426 3.695 -13.595 14.160 Atomic orbital electron populations 1.21304 0.95600 0.98492 1.01035 1.21447 0.96505 0.97396 0.99165 1.19064 0.89755 0.91889 0.87956 1.02992 1.21352 1.30283 1.11748 0.90773 0.92265 1.25620 0.95362 0.95713 1.01831 1.70025 1.37126 1.23717 1.25196 0.85587 0.77890 0.78760 0.79900 1.19133 1.20801 1.21074 1.62052 1.59468 1.02372 1.01768 1.22541 0.96939 0.90163 1.02218 1.22185 0.95039 0.99387 0.89895 1.21952 1.00031 0.94188 0.93356 0.90276 1.22441 1.02371 0.98206 0.93251 1.22887 1.00190 0.88951 0.96937 1.64768 1.55409 1.03632 1.02390 1.22549 0.96484 0.94448 0.99775 1.23462 0.97547 0.97644 0.89676 0.94632 0.94576 0.92815 0.95390 0.92060 0.93180 0.97683 0.90302 0.92314 0.96798 0.91277 0.91388 0.89926 0.93309 0.89378 0.90091 0.91101 0.95532 0.89986 0.94659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.62 9.52 71.98 0.68 -3.93 16 2 C -0.11 -5.12 5.16 30.59 0.16 -4.96 16 3 C 0.22 11.10 1.76 44.17 0.08 11.17 16 4 H -0.05 -2.73 8.14 -2.39 -0.02 -2.75 16 5 C -0.50 -27.16 6.51 25.60 0.17 -26.99 16 6 H 0.06 3.20 6.46 -2.91 -0.02 3.18 16 7 C 0.01 0.71 5.30 84.65 0.45 1.16 16 8 N -0.92 -52.91 11.31 21.45 0.24 -52.66 16 9 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.53 -22.27 3.76 -901.47 -3.39 -25.66 16 14 C 0.03 1.15 8.60 127.69 1.10 2.24 16 15 C 0.06 2.25 4.42 86.30 0.38 2.63 16 16 C -0.08 -2.19 3.22 -9.58 -0.03 -2.22 16 17 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 18 C -0.12 -2.88 6.51 31.47 0.20 -2.67 16 19 C 0.04 0.80 6.70 86.44 0.58 1.38 16 20 N -0.54 -12.89 5.55 -909.14 -5.05 -17.94 16 21 C 0.02 0.31 9.40 127.69 1.20 1.51 16 22 C 0.04 1.20 4.43 86.65 0.38 1.58 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.69 7.18 -2.38 -0.02 1.68 16 25 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 26 H 0.03 1.23 6.23 -2.39 -0.01 1.21 16 27 H 0.06 3.33 6.01 -2.38 -0.01 3.32 16 28 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.00 0.18 7.82 -2.39 -0.02 0.16 16 30 H 0.08 2.62 5.00 -2.39 -0.01 2.60 16 31 H 0.06 2.52 5.74 -2.39 -0.01 2.51 16 32 H 0.01 0.50 7.59 -2.39 -0.02 0.49 16 33 H 0.07 2.52 5.68 -2.39 -0.01 2.51 16 34 H 0.07 1.54 7.85 -2.39 -0.02 1.52 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 0.94 7.73 -2.39 -0.02 0.92 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.03 0.50 8.00 -2.39 -0.02 0.48 16 41 H 0.08 2.34 5.93 -2.39 -0.01 2.32 16 42 H 0.04 0.99 7.72 -2.39 -0.02 0.97 16 Total: -1.00 -58.82 310.89 0.15 -58.67 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.97 Total: 11.01 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 5.35 Total: -19.10 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -8.19 Total: -96.26 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -58.82 0.15 -58.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070822054.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.115 kcal (2) G-P(sol) polarization free energy of solvation -58.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds