Wall clock time and date at job start Mon Mar 30 2020 03:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 N 1.46897 * 109.47649 * 184.73052 * 3 2 1 5 5 C 1.46897 * 111.00446 * 166.78391 * 4 3 2 6 6 C 1.52998 * 109.47468 * 195.89635 * 5 4 3 7 7 C 1.53000 * 109.47092 * 181.91536 * 6 5 4 8 8 C 1.50706 * 109.46959 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00063 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00058 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00336 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46861 * 59.99857 * 12 10 8 14 14 H 1.48496 * 109.47450 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46889 * 300.00505 * 12 10 8 16 16 C 1.46897 * 111.00101 * 290.74276 * 4 3 2 17 17 H 1.09003 * 110.28955 * 39.06926 * 16 4 3 18 18 C 1.54264 * 110.32383 * 161.19159 * 16 4 3 19 19 C 1.54385 * 105.05930 * 118.89710 * 18 16 4 20 20 N 1.48560 * 104.59391 * 23.85179 * 19 18 16 21 21 C 1.48563 * 104.22271 * 320.51884 * 20 19 18 22 22 H 1.08999 * 109.47369 * 60.00252 * 1 2 3 23 23 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47259 * 300.00012 * 1 2 3 25 25 H 1.08999 * 109.47259 * 239.99988 * 2 1 3 26 26 H 1.08999 * 109.47369 * 119.99748 * 2 1 3 27 27 H 1.09006 * 109.47033 * 64.73038 * 3 2 1 28 28 H 1.09001 * 109.47143 * 304.73750 * 3 2 1 29 29 H 1.08999 * 109.46909 * 75.89617 * 5 4 3 30 30 H 1.09000 * 109.47189 * 315.89853 * 5 4 3 31 31 H 1.09005 * 109.46584 * 61.91713 * 6 5 4 32 32 H 1.08997 * 109.46955 * 301.91638 * 6 5 4 33 33 H 1.08995 * 109.47556 * 60.00177 * 7 6 5 34 34 H 1.09000 * 109.46952 * 299.99514 * 7 6 5 35 35 H 0.97007 * 119.99674 * 359.97438 * 11 10 8 36 36 H 1.08998 * 110.32495 * 237.78918 * 18 16 4 37 37 H 1.08995 * 110.32464 * 0.02562 * 18 16 4 38 38 H 1.08998 * 110.40957 * 142.63173 * 19 18 16 39 39 H 1.09000 * 110.40715 * 265.07826 * 19 18 16 40 40 H 1.00896 * 111.00055 * 200.96035 * 20 19 18 41 41 H 1.09001 * 110.41150 * 280.70323 * 21 20 19 42 42 H 1.08999 * 110.41118 * 158.26666 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5045 1.4441 -0.1142 5 6 4.0064 2.7879 -0.4309 6 6 5.4502 2.6892 -0.9274 7 6 5.9888 4.0928 -1.2118 8 6 7.4107 3.9955 -1.7014 9 1 7.8832 3.0293 -1.7995 10 6 8.1085 5.1400 -2.0242 11 7 7.5334 6.3166 -1.9044 12 14 9.8713 5.0195 -2.6304 13 1 9.9124 4.2111 -3.8755 14 1 10.3940 6.3817 -2.9067 15 1 10.7090 4.3698 -1.5905 16 6 4.1286 0.9240 1.1096 17 1 3.5526 0.0851 1.5005 18 6 5.5820 0.4906 0.8274 19 6 6.4508 1.3815 1.7411 20 7 5.5412 1.7865 2.8437 21 6 4.2416 2.0402 2.1701 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7475 1.9313 0.9294 28 1 1.6090 1.9802 -0.8445 29 1 3.9716 3.4090 0.4642 30 1 3.3850 3.2343 -1.2072 31 1 5.4803 2.0963 -1.8416 32 1 6.0650 2.2119 -0.1643 33 1 5.9587 4.6857 -0.2978 34 1 5.3740 4.5700 -1.9750 35 1 6.6181 6.3792 -1.5892 36 1 5.7198 -0.5604 1.0815 37 1 5.8324 0.6643 -0.2191 38 1 7.2949 0.8145 2.1336 39 1 6.8009 2.2579 1.1958 40 1 5.8786 2.6188 3.3035 41 1 4.2460 3.0197 1.6919 42 1 3.4223 1.9692 2.8855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070902515.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:10 Heat of formation + Delta-G solvation = 9.896976 kcal Electronic energy + Delta-G solvation = -18337.292277 eV Core-core repulsion = 15738.333278 eV Total energy + Delta-G solvation = -2598.958999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87629 -36.00057 -34.43556 -32.99608 -31.06306 -29.70553 -27.83252 -26.71428 -24.33188 -22.80468 -21.81840 -21.06474 -20.29741 -19.17469 -16.90926 -16.73605 -16.21392 -15.07553 -14.66482 -14.20474 -14.00441 -13.70936 -13.44109 -13.10894 -12.87129 -12.45599 -12.16130 -12.07036 -11.93395 -11.66434 -11.35546 -11.20745 -11.11740 -10.93733 -10.79188 -10.68805 -10.42851 -10.31369 -10.08116 -9.60797 -9.37087 -8.52926 -8.40604 -8.30492 -8.00701 -6.34898 -4.03685 3.44198 3.46083 3.64715 3.96996 4.53752 4.57674 4.80548 4.89414 4.93869 5.03967 5.24815 5.26879 5.40374 5.42606 5.48099 5.57734 5.66559 5.67362 5.69256 5.78816 5.92410 5.92690 6.08022 6.12119 6.16213 6.24180 6.26899 6.31730 6.35282 6.61694 6.69418 6.80458 7.04622 7.34227 7.35738 7.39621 7.46861 7.57531 8.24642 8.48157 8.90194 9.68774 11.05478 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027910 B = 0.005799 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.986363 B = 4827.340116 C = 5342.942477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.053 3.947 4 N -0.529 5.529 5 C 0.040 3.960 6 C -0.125 4.125 7 C 0.010 3.990 8 C -0.598 4.598 9 H 0.048 0.952 10 C 0.014 3.986 11 N -0.914 5.914 12 Si 1.067 2.933 13 H -0.288 1.288 14 H -0.283 1.283 15 H -0.288 1.288 16 C 0.083 3.917 17 H 0.085 0.915 18 C -0.127 4.127 19 C 0.022 3.978 20 N -0.663 5.663 21 C -0.013 4.013 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.000 1.000 34 H 0.003 0.997 35 H 0.267 0.733 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.334 0.666 41 H 0.066 0.934 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 -11.109 6.640 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.075 4.075 4 N -0.252 5.252 5 C -0.087 4.087 6 C -0.163 4.163 7 C -0.027 4.027 8 C -0.636 4.636 9 H 0.066 0.934 10 C -0.190 4.190 11 N -0.551 5.551 12 Si 0.895 3.105 13 H -0.214 1.214 14 H -0.208 1.208 15 H -0.215 1.215 16 C -0.026 4.026 17 H 0.103 0.897 18 C -0.165 4.165 19 C -0.107 4.107 20 N -0.291 5.291 21 C -0.144 4.144 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.747 -11.204 6.008 15.432 hybrid contribution -1.466 0.558 0.722 1.727 sum -10.213 -10.646 6.730 16.216 Atomic orbital electron populations 1.21736 0.95926 1.01494 1.01654 1.21537 0.95021 0.96702 1.02535 1.22155 0.88235 0.96921 1.00230 1.62369 1.04735 1.24940 1.33186 1.22594 0.98683 0.88032 0.99355 1.22154 0.92615 1.00322 1.01158 1.19194 0.96486 0.91661 0.95395 1.22031 0.98312 0.95025 1.48234 0.93366 1.25837 1.05470 0.92472 0.95180 1.70791 1.15394 1.25022 1.43878 0.83573 0.74722 0.75798 0.76374 1.21423 1.20817 1.21462 1.22408 0.96115 0.96247 0.87821 0.89685 1.22676 0.93262 0.98894 1.01654 1.23189 0.95924 0.99599 0.91950 1.63703 1.02939 1.37288 1.25208 1.23836 0.93421 1.00317 0.96833 0.92714 0.92737 0.93024 0.91085 0.92231 0.95204 0.91022 0.93841 0.91695 0.92690 0.90125 0.98186 0.97862 0.92237 0.91697 0.88309 0.90533 0.91694 0.85176 0.91602 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.29 5.88 -26.73 -0.16 -1.44 16 3 C 0.05 0.66 4.90 -3.83 -0.02 0.64 16 4 N -0.53 -7.88 4.39 -225.00 -0.99 -8.87 16 5 C 0.04 0.70 4.61 -3.83 -0.02 0.68 16 6 C -0.13 -2.59 4.01 -26.73 -0.11 -2.70 16 7 C 0.01 0.26 4.28 -27.88 -0.12 0.14 16 8 C -0.60 -17.05 9.11 -34.44 -0.31 -17.36 16 9 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 10 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 11 N -0.91 -28.24 13.65 55.43 0.76 -27.49 16 12 Si 1.07 25.46 29.90 -169.99 -5.08 20.38 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 16 C 0.08 1.19 2.93 -66.33 -0.19 0.99 16 17 H 0.09 1.13 6.20 -51.93 -0.32 0.81 16 18 C -0.13 -1.89 5.85 -25.34 -0.15 -2.04 16 19 C 0.02 0.34 6.97 -2.18 -0.02 0.33 16 20 N -0.66 -9.59 7.62 -109.66 -0.84 -10.42 16 21 C -0.01 -0.19 6.51 -2.18 -0.01 -0.21 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.63 6.58 -51.93 -0.34 0.29 16 27 H 0.03 0.37 7.83 -51.93 -0.41 -0.04 16 28 H 0.07 0.90 7.79 -51.93 -0.40 0.49 16 29 H 0.04 0.77 4.87 -51.93 -0.25 0.51 16 30 H 0.06 1.14 7.76 -51.93 -0.40 0.74 16 31 H 0.05 1.19 8.12 -51.93 -0.42 0.77 16 32 H 0.08 1.60 2.13 -51.93 -0.11 1.49 16 33 H 0.00 0.00 8.01 -51.93 -0.42 -0.42 16 34 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 35 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.65 5.39 -51.93 -0.28 1.37 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.17 6.20 -51.93 -0.32 0.85 16 40 H 0.33 4.54 8.92 -39.29 -0.35 4.19 16 41 H 0.07 1.05 4.60 -51.93 -0.24 0.81 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -30.04 311.67 -9.43 -39.47 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.14 Total: 3.87 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -0.83 Total: -21.64 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -1.07 Total: -46.78 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.04 -9.43 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070902515.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.365 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds