Wall clock time and date at job start Mon Mar 30 2020 03:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 N 1.46897 * 109.47649 * 184.73052 * 3 2 1 5 5 C 1.46897 * 111.00446 * 166.78391 * 4 3 2 6 6 C 1.52998 * 109.47468 * 195.89635 * 5 4 3 7 7 C 1.53000 * 109.47092 * 181.91536 * 6 5 4 8 8 C 1.50706 * 109.46959 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00063 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00058 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00336 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46861 * 59.99857 * 12 10 8 14 14 H 1.48496 * 109.47450 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46889 * 300.00505 * 12 10 8 16 16 C 1.46897 * 111.00101 * 290.74276 * 4 3 2 17 17 H 1.09003 * 110.28955 * 39.06926 * 16 4 3 18 18 C 1.54264 * 110.32383 * 161.19159 * 16 4 3 19 19 C 1.54385 * 105.05930 * 118.89710 * 18 16 4 20 20 N 1.48560 * 104.59391 * 23.85179 * 19 18 16 21 21 C 1.48563 * 104.22271 * 320.51884 * 20 19 18 22 22 H 1.08999 * 109.47369 * 60.00252 * 1 2 3 23 23 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47259 * 300.00012 * 1 2 3 25 25 H 1.08999 * 109.47259 * 239.99988 * 2 1 3 26 26 H 1.08999 * 109.47369 * 119.99748 * 2 1 3 27 27 H 1.09006 * 109.47033 * 64.73038 * 3 2 1 28 28 H 1.09001 * 109.47143 * 304.73750 * 3 2 1 29 29 H 1.08999 * 109.46909 * 75.89617 * 5 4 3 30 30 H 1.09000 * 109.47189 * 315.89853 * 5 4 3 31 31 H 1.09005 * 109.46584 * 61.91713 * 6 5 4 32 32 H 1.08997 * 109.46955 * 301.91638 * 6 5 4 33 33 H 1.08995 * 109.47556 * 60.00177 * 7 6 5 34 34 H 1.09000 * 109.46952 * 299.99514 * 7 6 5 35 35 H 0.97007 * 119.99674 * 359.97438 * 11 10 8 36 36 H 1.08998 * 110.32495 * 237.78918 * 18 16 4 37 37 H 1.08995 * 110.32464 * 0.02562 * 18 16 4 38 38 H 1.08998 * 110.40957 * 142.63173 * 19 18 16 39 39 H 1.09000 * 110.40715 * 265.07826 * 19 18 16 40 40 H 1.00896 * 111.00055 * 200.96035 * 20 19 18 41 41 H 1.09001 * 110.41150 * 280.70323 * 21 20 19 42 42 H 1.08999 * 110.41118 * 158.26666 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5045 1.4441 -0.1142 5 6 4.0064 2.7879 -0.4309 6 6 5.4502 2.6892 -0.9274 7 6 5.9888 4.0928 -1.2118 8 6 7.4107 3.9955 -1.7014 9 1 7.8832 3.0293 -1.7995 10 6 8.1085 5.1400 -2.0242 11 7 7.5334 6.3166 -1.9044 12 14 9.8713 5.0195 -2.6304 13 1 9.9124 4.2111 -3.8755 14 1 10.3940 6.3817 -2.9067 15 1 10.7090 4.3698 -1.5905 16 6 4.1286 0.9240 1.1096 17 1 3.5526 0.0851 1.5005 18 6 5.5820 0.4906 0.8274 19 6 6.4508 1.3815 1.7411 20 7 5.5412 1.7865 2.8437 21 6 4.2416 2.0402 2.1701 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7475 1.9313 0.9294 28 1 1.6090 1.9802 -0.8445 29 1 3.9716 3.4090 0.4642 30 1 3.3850 3.2343 -1.2072 31 1 5.4803 2.0963 -1.8416 32 1 6.0650 2.2119 -0.1643 33 1 5.9587 4.6857 -0.2978 34 1 5.3740 4.5700 -1.9750 35 1 6.6181 6.3792 -1.5892 36 1 5.7198 -0.5604 1.0815 37 1 5.8324 0.6643 -0.2191 38 1 7.2949 0.8145 2.1336 39 1 6.8009 2.2579 1.1958 40 1 5.8786 2.6188 3.3035 41 1 4.2460 3.0197 1.6919 42 1 3.4223 1.9692 2.8855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070902515.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:10 Heat of formation + Delta-G solvation = -10.618069 kcal Electronic energy + Delta-G solvation = -18338.181876 eV Core-core repulsion = 15738.333278 eV Total energy + Delta-G solvation = -2599.848598 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11208 -37.12166 -36.31131 -34.41509 -32.70737 -30.89706 -29.07666 -28.30229 -25.80880 -24.41847 -23.16243 -22.18061 -21.84639 -20.39189 -18.84834 -18.17261 -17.44528 -16.04171 -15.92752 -15.64595 -15.46580 -15.42060 -15.06059 -14.63654 -14.10163 -13.74472 -13.45882 -13.35024 -13.09469 -12.99773 -12.90901 -12.60193 -12.42994 -12.31278 -12.04191 -11.98152 -11.91608 -11.76706 -11.62629 -11.19993 -11.01532 -10.65195 -10.53919 -9.62079 -9.22962 -8.69761 -6.39980 1.51147 1.59593 1.78876 2.55277 2.78562 3.14966 3.38629 3.66630 3.75486 3.91886 3.96659 4.15768 4.18560 4.26201 4.31475 4.43368 4.47709 4.63638 4.66164 4.68531 4.72811 4.78376 4.83571 4.92334 4.96638 5.00920 5.04534 5.09553 5.19495 5.21818 5.31215 5.42114 5.49820 5.54447 5.61346 5.97911 6.10498 6.17262 6.21837 6.24042 6.57473 7.42226 8.70645 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027910 B = 0.005799 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.986363 B = 4827.340116 C = 5342.942477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.051 3.949 4 N -0.533 5.533 5 C 0.051 3.949 6 C -0.112 4.112 7 C 0.014 3.986 8 C -0.613 4.613 9 H 0.050 0.950 10 C -0.039 4.039 11 N -0.939 5.939 12 Si 1.116 2.884 13 H -0.269 1.269 14 H -0.284 1.284 15 H -0.267 1.267 16 C 0.085 3.915 17 H 0.104 0.896 18 C -0.127 4.127 19 C 0.025 3.975 20 N -0.658 5.658 21 C -0.011 4.011 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.092 0.908 33 H -0.018 1.018 34 H -0.020 1.020 35 H 0.253 0.747 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.031 0.969 40 H 0.338 0.662 41 H 0.048 0.952 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 -12.909 7.367 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.076 4.076 4 N -0.256 5.256 5 C -0.077 4.077 6 C -0.150 4.150 7 C -0.023 4.023 8 C -0.651 4.651 9 H 0.068 0.932 10 C -0.236 4.236 11 N -0.576 5.576 12 Si 0.937 3.063 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.192 1.192 16 C -0.024 4.024 17 H 0.122 0.878 18 C -0.165 4.165 19 C -0.104 4.104 20 N -0.286 5.286 21 C -0.142 4.142 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.000 1.000 34 H -0.002 1.002 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.050 0.950 40 H 0.153 0.847 41 H 0.065 0.935 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.994 -13.027 6.747 17.208 hybrid contribution -1.443 1.104 0.524 1.890 sum -10.437 -11.923 7.271 17.434 Atomic orbital electron populations 1.21707 0.94389 1.02390 1.01958 1.21485 0.96273 0.95027 1.02355 1.22252 0.86388 0.98478 1.00485 1.62308 1.06393 1.22931 1.33944 1.22321 0.96424 0.89753 0.99160 1.21989 0.95110 0.96769 1.01104 1.19116 0.95420 0.94229 0.93569 1.22447 0.99624 0.95168 1.47828 0.93180 1.27435 1.09508 0.91969 0.94721 1.70930 1.14920 1.26113 1.45666 0.82963 0.70029 0.76188 0.77163 1.19434 1.20910 1.19222 1.22474 0.95875 0.96637 0.87392 0.87836 1.22657 0.93681 0.99961 1.00205 1.23118 0.96702 0.98503 0.92119 1.63743 1.02795 1.37532 1.24535 1.23824 0.93878 0.99308 0.97159 0.92725 0.91563 0.92450 0.91893 0.91727 0.94506 0.91288 0.93834 0.92217 0.93849 0.88994 0.99976 1.00184 0.93758 0.89718 0.90374 0.89201 0.95039 0.84706 0.93471 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 71.98 0.71 -1.52 16 2 C -0.11 -2.16 5.88 30.59 0.18 -1.99 16 3 C 0.05 1.20 4.90 86.30 0.42 1.62 16 4 N -0.53 -15.27 4.39 -865.77 -3.80 -19.07 16 5 C 0.05 1.78 4.61 86.30 0.40 2.18 16 6 C -0.11 -4.76 4.01 30.59 0.12 -4.63 16 7 C 0.01 0.76 4.28 29.85 0.13 0.88 16 8 C -0.61 -35.61 9.11 25.60 0.23 -35.38 16 9 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 10 C -0.04 -2.32 5.46 84.65 0.46 -1.85 16 11 N -0.94 -59.30 13.65 21.45 0.29 -59.00 16 12 Si 1.12 50.86 29.90 68.60 2.05 52.91 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 16 C 0.09 2.26 2.93 45.81 0.13 2.39 16 17 H 0.10 2.42 6.20 -2.39 -0.01 2.41 16 18 C -0.13 -3.60 5.85 31.49 0.18 -3.42 16 19 C 0.02 0.74 6.97 86.45 0.60 1.34 16 20 N -0.66 -18.03 7.62 -500.85 -3.82 -21.85 16 21 C -0.01 -0.30 6.51 86.45 0.56 0.26 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.17 6.58 -2.39 -0.02 1.16 16 27 H 0.04 0.82 7.83 -2.38 -0.02 0.80 16 28 H 0.07 1.65 7.79 -2.39 -0.02 1.63 16 29 H 0.04 1.55 4.87 -2.39 -0.01 1.54 16 30 H 0.06 2.13 7.76 -2.39 -0.02 2.11 16 31 H 0.04 1.91 8.12 -2.38 -0.02 1.89 16 32 H 0.09 3.71 2.13 -2.39 -0.01 3.71 16 33 H -0.02 -1.02 8.01 -2.39 -0.02 -1.04 16 34 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 35 H 0.25 16.24 7.22 -92.70 -0.67 15.57 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.08 2.56 5.39 -2.39 -0.01 2.55 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.03 1.15 6.20 -2.39 -0.01 1.14 16 40 H 0.34 8.86 8.92 -89.70 -0.80 8.06 16 41 H 0.05 1.48 4.60 -2.39 -0.01 1.47 16 42 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -64.78 311.67 -0.84 -65.63 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.29 Total: 21.50 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 4.14 Total: -40.11 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -7.33 Total: -99.92 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Total: -64.78 -0.84 -65.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070902515.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.007 kcal (2) G-P(sol) polarization free energy of solvation -64.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds