Wall clock time and date at job start Mon Mar 30 2020 04:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47012 * 2 1 4 4 N 1.46902 * 109.46640 * 177.44806 * 3 2 1 5 5 C 1.46902 * 110.99780 * 163.88346 * 4 3 2 6 6 H 1.09002 * 109.47135 * 71.41470 * 5 4 3 7 7 C 1.50706 * 109.46982 * 311.42057 * 5 4 3 8 8 H 1.08002 * 120.00139 * 359.97438 * 7 5 4 9 9 C 1.37876 * 119.99777 * 180.02562 * 7 5 4 10 10 N 1.31518 * 119.99796 * 179.97438 * 9 7 5 11 11 Si 1.86797 * 120.00184 * 359.97438 * 9 7 5 12 12 H 1.48498 * 109.47356 * 90.00534 * 11 9 7 13 13 H 1.48506 * 109.47003 * 210.00274 * 11 9 7 14 14 H 1.48498 * 109.47128 * 329.99637 * 11 9 7 15 15 C 1.52997 * 109.47385 * 191.42040 * 5 4 3 16 16 C 1.52996 * 109.47358 * 60.83913 * 15 5 4 17 17 C 1.46904 * 110.99990 * 287.83161 * 4 3 2 18 18 H 1.08997 * 110.27094 * 41.38021 * 17 4 3 19 19 C 1.54599 * 110.30775 * 279.29355 * 17 4 3 20 20 C 1.55100 * 102.84087 * 219.18649 * 19 17 4 21 21 N 1.48527 * 103.28759 * 37.30791 * 20 19 17 22 22 C 1.47899 * 105.82034 * 320.84464 * 21 20 19 23 23 H 1.09003 * 109.47221 * 300.00113 * 1 2 3 24 24 H 1.08999 * 109.47522 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47535 * 59.99791 * 1 2 3 26 26 H 1.08993 * 109.47382 * 120.00115 * 2 1 3 27 27 H 1.09004 * 109.47297 * 240.00437 * 2 1 3 28 28 H 1.09003 * 109.47137 * 297.44398 * 3 2 1 29 29 H 1.08993 * 109.47056 * 57.45121 * 3 2 1 30 30 H 0.96998 * 120.00201 * 179.97438 * 10 9 7 31 31 H 1.09003 * 109.47289 * 180.84164 * 15 5 4 32 32 H 1.09002 * 109.47045 * 300.83657 * 15 5 4 33 33 H 1.08993 * 109.47470 * 188.95143 * 16 15 5 34 34 H 1.09003 * 109.46929 * 308.95159 * 16 15 5 35 35 H 1.08994 * 109.47409 * 68.94475 * 16 15 5 36 36 H 1.08995 * 110.72216 * 337.48273 * 19 17 4 37 37 H 1.08998 * 110.72344 * 100.77440 * 19 17 4 38 38 H 1.09003 * 110.59264 * 278.87110 * 20 19 17 39 39 H 1.09003 * 110.83241 * 155.85538 * 20 19 17 40 40 H 1.00903 * 111.00358 * 200.33522 * 21 20 19 41 41 H 1.09000 * 109.92285 * 265.97804 * 22 21 20 42 42 H 1.09001 * 110.08372 * 144.77852 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5076 1.4429 0.0617 5 6 4.0500 2.7548 -0.3161 6 1 3.8409 3.4757 0.4743 7 6 3.4056 3.2145 -1.5986 8 1 2.6673 2.5939 -2.0846 9 6 3.7593 4.4267 -2.1519 10 7 3.1973 4.8276 -3.2713 11 14 5.0368 5.4998 -1.3117 12 1 6.3875 5.1539 -1.8230 13 1 4.7497 6.9282 -1.5989 14 1 4.9888 5.2705 0.1547 15 6 5.5626 2.6427 -0.5171 16 6 5.8554 1.6465 -1.6407 17 6 3.9787 1.0425 1.3943 18 1 3.3816 0.2127 1.7723 19 6 3.9110 2.2402 2.3695 20 6 5.2068 2.0770 3.2062 21 7 6.1977 1.5948 2.2103 22 6 5.4665 0.6491 1.3394 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.7145 1.9430 -0.9120 29 1 1.6398 1.9694 0.8662 30 1 3.4459 5.6806 -3.6605 31 1 5.9672 3.6194 -0.7828 32 1 6.0271 2.2960 0.4061 33 1 6.9260 1.4458 -1.6786 34 1 5.3180 0.7172 -1.4515 35 1 5.5305 2.0666 -2.5926 36 1 3.9211 3.1833 1.8233 37 1 3.0284 2.1706 3.0052 38 1 5.0634 1.3385 3.9950 39 1 5.5189 3.0325 3.6278 40 1 6.9754 1.1401 2.6649 41 1 5.5951 -0.3692 1.7063 42 1 5.8328 0.7236 0.3154 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070903239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:13 Heat of formation + Delta-G solvation = 41.490683 kcal Electronic energy + Delta-G solvation = -19358.611878 eV Core-core repulsion = 16761.022886 eV Total energy + Delta-G solvation = -2597.588993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.61046 -35.86365 -34.01461 -32.02918 -31.25661 -28.89243 -28.41932 -26.32533 -24.42011 -22.74393 -21.35593 -21.09762 -20.01022 -18.38857 -16.65174 -16.50219 -15.62861 -14.83807 -14.51072 -13.87318 -13.66338 -13.51797 -13.43953 -12.60285 -12.43360 -12.25582 -12.06276 -11.70236 -11.41561 -11.32971 -11.20167 -10.85172 -10.76825 -10.70811 -10.60916 -10.40752 -10.21141 -9.99316 -9.65603 -9.53410 -9.06667 -8.57295 -8.43337 -8.18408 -7.21317 -5.99749 -3.96240 3.36957 3.45645 3.48703 4.47490 4.49119 4.72842 5.08486 5.21010 5.31879 5.39867 5.46779 5.54223 5.64864 5.75193 5.83595 5.92224 6.10407 6.13478 6.16241 6.25290 6.30453 6.33606 6.39513 6.44215 6.51238 6.59651 6.67102 6.80731 6.91685 7.00640 7.14204 7.19174 7.25751 7.43029 7.53237 7.60659 7.78903 8.05604 8.22852 8.73507 9.04877 9.63735 11.12353 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017255 B = 0.012302 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.362983 B = 2275.542013 C = 3229.337889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.053 3.947 4 N -0.511 5.511 5 C 0.181 3.819 6 H 0.010 0.990 7 C -0.503 4.503 8 H 0.083 0.917 9 C 0.072 3.928 10 N -0.902 5.902 11 Si 0.885 3.115 12 H -0.279 1.279 13 H -0.303 1.303 14 H -0.268 1.268 15 C -0.154 4.154 16 C -0.127 4.127 17 C 0.074 3.926 18 H 0.073 0.927 19 C -0.176 4.176 20 C 0.043 3.957 21 N -0.666 5.666 22 C 0.024 3.976 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.018 0.982 30 H 0.262 0.738 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.018 0.982 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.330 0.670 41 H 0.028 0.972 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -8.227 10.876 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.074 4.074 4 N -0.234 5.234 5 C 0.074 3.926 6 H 0.027 0.973 7 C -0.541 4.541 8 H 0.101 0.899 9 C -0.129 4.129 10 N -0.541 5.541 11 Si 0.717 3.283 12 H -0.206 1.206 13 H -0.231 1.231 14 H -0.194 1.194 15 C -0.192 4.192 16 C -0.184 4.184 17 C -0.036 4.036 18 H 0.092 0.908 19 C -0.215 4.215 20 C -0.086 4.086 21 N -0.295 5.295 22 C -0.105 4.105 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.116 0.884 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.145 0.855 41 H 0.047 0.953 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.646 -7.859 9.933 12.773 hybrid contribution 0.316 0.525 1.571 1.686 sum 1.962 -7.335 11.504 13.783 Atomic orbital electron populations 1.21722 0.96573 1.00662 1.01692 1.21541 0.94497 0.98109 1.01447 1.22201 0.87857 0.94999 1.02376 1.62089 1.07918 1.31650 1.21718 1.19841 0.91933 0.84988 0.95831 0.97271 1.21070 1.23365 1.03548 1.06165 0.89919 1.24868 0.96021 0.97455 0.94583 1.69888 1.43429 1.21561 1.19222 0.86885 0.82223 0.78571 0.80666 1.20576 1.23086 1.19352 1.22510 0.98276 0.97955 1.00450 1.21512 0.96956 0.99891 1.00059 1.22509 0.95041 0.96084 0.89953 0.90847 1.23475 0.96277 1.03195 0.98543 1.22934 0.92723 0.99458 0.93521 1.63024 1.09223 1.37719 1.19546 1.23281 0.93903 0.92217 1.01064 0.93389 0.93454 0.92512 0.93363 0.91622 0.87944 0.96407 0.92826 0.94766 0.88396 0.96254 0.92186 0.92341 0.88156 0.92074 0.94859 0.90790 0.85499 0.95333 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.15 0.37 -1.65 16 2 C -0.12 -1.84 6.04 -26.73 -0.16 -2.00 16 3 C 0.05 1.01 4.66 -3.82 -0.02 1.00 16 4 N -0.51 -10.09 3.43 -218.48 -0.75 -10.84 16 5 C 0.18 4.17 0.98 -68.86 -0.07 4.11 16 6 H 0.01 0.25 4.18 -51.93 -0.22 0.03 16 7 C -0.50 -13.65 7.20 -34.44 -0.25 -13.90 16 8 H 0.08 2.42 6.22 -52.49 -0.33 2.10 16 9 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 10 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 11 Si 0.89 22.61 24.36 -169.99 -4.14 18.47 16 12 H -0.28 -7.08 6.87 56.52 0.39 -6.69 16 13 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 14 H -0.27 -6.67 6.53 56.52 0.37 -6.30 16 15 C -0.15 -3.43 4.58 -26.73 -0.12 -3.56 16 16 C -0.13 -2.70 8.26 37.16 0.31 -2.39 16 17 C 0.07 1.25 2.86 -66.35 -0.19 1.06 16 18 H 0.07 1.14 6.31 -51.93 -0.33 0.81 16 19 C -0.18 -2.89 5.96 -24.78 -0.15 -3.03 16 20 C 0.04 0.61 7.55 -1.81 -0.01 0.59 16 21 N -0.67 -9.85 5.77 -109.99 -0.64 -10.48 16 22 C 0.02 0.37 6.02 -2.76 -0.02 0.36 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.70 6.50 -51.93 -0.34 0.36 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.10 2.27 5.32 -51.93 -0.28 1.99 16 29 H 0.02 0.33 7.67 -51.93 -0.40 -0.07 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.03 0.83 3.29 -51.93 -0.17 0.66 16 32 H 0.10 1.98 3.21 -51.93 -0.17 1.82 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 1.22 6.48 -51.93 -0.34 0.89 16 35 H 0.06 1.39 7.53 -51.93 -0.39 1.00 16 36 H 0.10 1.98 4.77 -51.93 -0.25 1.74 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.33 3.97 8.92 -39.29 -0.35 3.62 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.12 2.09 3.38 -51.93 -0.18 1.91 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -29.02 292.89 -7.45 -36.47 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.71 Total: 6.04 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -0.41 Total: -17.46 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.61 Total: -47.94 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.14 Total: 18.47 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.02 -7.45 -36.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070903239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.965 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds