Wall clock time and date at job start Mon Mar 30 2020 04:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47012 * 2 1 4 4 N 1.46902 * 109.46640 * 177.44806 * 3 2 1 5 5 C 1.46902 * 110.99780 * 163.88346 * 4 3 2 6 6 H 1.09002 * 109.47135 * 71.41470 * 5 4 3 7 7 C 1.50706 * 109.46982 * 311.42057 * 5 4 3 8 8 H 1.08002 * 120.00139 * 359.97438 * 7 5 4 9 9 C 1.37876 * 119.99777 * 180.02562 * 7 5 4 10 10 N 1.31518 * 119.99796 * 179.97438 * 9 7 5 11 11 Si 1.86797 * 120.00184 * 359.97438 * 9 7 5 12 12 H 1.48498 * 109.47356 * 90.00534 * 11 9 7 13 13 H 1.48506 * 109.47003 * 210.00274 * 11 9 7 14 14 H 1.48498 * 109.47128 * 329.99637 * 11 9 7 15 15 C 1.52997 * 109.47385 * 191.42040 * 5 4 3 16 16 C 1.52996 * 109.47358 * 60.83913 * 15 5 4 17 17 C 1.46904 * 110.99990 * 287.83161 * 4 3 2 18 18 H 1.08997 * 110.27094 * 41.38021 * 17 4 3 19 19 C 1.54599 * 110.30775 * 279.29355 * 17 4 3 20 20 C 1.55100 * 102.84087 * 219.18649 * 19 17 4 21 21 N 1.48527 * 103.28759 * 37.30791 * 20 19 17 22 22 C 1.47899 * 105.82034 * 320.84464 * 21 20 19 23 23 H 1.09003 * 109.47221 * 300.00113 * 1 2 3 24 24 H 1.08999 * 109.47522 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47535 * 59.99791 * 1 2 3 26 26 H 1.08993 * 109.47382 * 120.00115 * 2 1 3 27 27 H 1.09004 * 109.47297 * 240.00437 * 2 1 3 28 28 H 1.09003 * 109.47137 * 297.44398 * 3 2 1 29 29 H 1.08993 * 109.47056 * 57.45121 * 3 2 1 30 30 H 0.96998 * 120.00201 * 179.97438 * 10 9 7 31 31 H 1.09003 * 109.47289 * 180.84164 * 15 5 4 32 32 H 1.09002 * 109.47045 * 300.83657 * 15 5 4 33 33 H 1.08993 * 109.47470 * 188.95143 * 16 15 5 34 34 H 1.09003 * 109.46929 * 308.95159 * 16 15 5 35 35 H 1.08994 * 109.47409 * 68.94475 * 16 15 5 36 36 H 1.08995 * 110.72216 * 337.48273 * 19 17 4 37 37 H 1.08998 * 110.72344 * 100.77440 * 19 17 4 38 38 H 1.09003 * 110.59264 * 278.87110 * 20 19 17 39 39 H 1.09003 * 110.83241 * 155.85538 * 20 19 17 40 40 H 1.00903 * 111.00358 * 200.33522 * 21 20 19 41 41 H 1.09000 * 109.92285 * 265.97804 * 22 21 20 42 42 H 1.09001 * 110.08372 * 144.77852 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5076 1.4429 0.0617 5 6 4.0500 2.7548 -0.3161 6 1 3.8409 3.4757 0.4743 7 6 3.4056 3.2145 -1.5986 8 1 2.6673 2.5939 -2.0846 9 6 3.7593 4.4267 -2.1519 10 7 3.1973 4.8276 -3.2713 11 14 5.0368 5.4998 -1.3117 12 1 6.3875 5.1539 -1.8230 13 1 4.7497 6.9282 -1.5989 14 1 4.9888 5.2705 0.1547 15 6 5.5626 2.6427 -0.5171 16 6 5.8554 1.6465 -1.6407 17 6 3.9787 1.0425 1.3943 18 1 3.3816 0.2127 1.7723 19 6 3.9110 2.2402 2.3695 20 6 5.2068 2.0770 3.2062 21 7 6.1977 1.5948 2.2103 22 6 5.4665 0.6491 1.3394 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.7145 1.9430 -0.9120 29 1 1.6398 1.9694 0.8662 30 1 3.4459 5.6806 -3.6605 31 1 5.9672 3.6194 -0.7828 32 1 6.0271 2.2960 0.4061 33 1 6.9260 1.4458 -1.6786 34 1 5.3180 0.7172 -1.4515 35 1 5.5305 2.0666 -2.5926 36 1 3.9211 3.1833 1.8233 37 1 3.0284 2.1706 3.0052 38 1 5.0634 1.3385 3.9950 39 1 5.5189 3.0325 3.6278 40 1 6.9754 1.1401 2.6649 41 1 5.5951 -0.3692 1.7063 42 1 5.8328 0.7236 0.3154 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070903239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:12 Heat of formation + Delta-G solvation = 20.852378 kcal Electronic energy + Delta-G solvation = -19359.506822 eV Core-core repulsion = 16761.022886 eV Total energy + Delta-G solvation = -2598.483937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04421 -37.26734 -35.66710 -33.94166 -32.80857 -30.15807 -29.94465 -27.95645 -26.09461 -24.44043 -22.70639 -22.37926 -21.57635 -20.02169 -18.44632 -17.92202 -17.16084 -16.52331 -15.95965 -15.58808 -15.28630 -15.05477 -14.87551 -14.24885 -13.90418 -13.72287 -13.33330 -13.14201 -12.97684 -12.77784 -12.62350 -12.55735 -12.39721 -12.20186 -12.16449 -11.99654 -11.79727 -11.63524 -11.31124 -11.17417 -10.91370 -10.57988 -10.39342 -9.32908 -8.81607 -8.22972 -6.20690 1.31097 1.33702 1.43700 2.34672 3.11647 3.20651 3.42493 3.90717 3.98256 4.09339 4.27296 4.31887 4.43078 4.50836 4.52170 4.63645 4.65127 4.70986 4.79754 4.82721 4.93356 4.99117 5.02761 5.09230 5.11625 5.20596 5.28267 5.34931 5.40047 5.46540 5.49966 5.52789 5.63196 5.73556 5.87596 5.96866 6.14551 6.49777 6.59754 6.82331 6.87758 7.42381 8.92669 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017255 B = 0.012302 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.362983 B = 2275.542013 C = 3229.337889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C 0.057 3.943 4 N -0.516 5.516 5 C 0.188 3.812 6 H -0.001 1.001 7 C -0.491 4.491 8 H 0.048 0.952 9 C 0.018 3.982 10 N -0.949 5.949 11 Si 0.940 3.060 12 H -0.275 1.275 13 H -0.305 1.305 14 H -0.257 1.257 15 C -0.153 4.153 16 C -0.117 4.117 17 C 0.070 3.930 18 H 0.094 0.906 19 C -0.177 4.177 20 C 0.051 3.949 21 N -0.682 5.682 22 C 0.025 3.975 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.018 0.982 30 H 0.261 0.739 31 H 0.014 0.986 32 H 0.126 0.874 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.349 0.651 41 H 0.057 0.943 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.669 -10.014 13.768 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.071 4.071 4 N -0.239 5.239 5 C 0.081 3.919 6 H 0.016 0.984 7 C -0.529 4.529 8 H 0.066 0.934 9 C -0.179 4.179 10 N -0.591 5.591 11 Si 0.770 3.230 12 H -0.201 1.201 13 H -0.234 1.234 14 H -0.181 1.181 15 C -0.191 4.191 16 C -0.174 4.174 17 C -0.039 4.039 18 H 0.112 0.888 19 C -0.216 4.216 20 C -0.078 4.078 21 N -0.313 5.313 22 C -0.103 4.103 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.143 0.857 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.166 0.834 41 H 0.075 0.925 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.821 -9.669 12.854 16.330 hybrid contribution -0.116 0.993 0.699 1.220 sum 2.705 -8.676 13.554 16.318 Atomic orbital electron populations 1.21698 0.95002 1.02171 1.01420 1.21442 0.95809 0.95360 1.01892 1.22114 0.87755 0.97140 1.00120 1.62052 1.08139 1.29298 1.24402 1.19613 0.92516 0.86595 0.93204 0.98370 1.21355 1.21832 1.02589 1.07135 0.93373 1.25560 0.98074 0.99043 0.95203 1.70024 1.45651 1.22258 1.21188 0.85981 0.80081 0.76659 0.80295 1.20125 1.23381 1.18141 1.22558 0.97318 0.97143 1.02048 1.21409 0.98722 0.99603 0.97693 1.22684 0.96331 0.96809 0.88096 0.88784 1.23400 0.98585 1.00885 0.98774 1.22904 0.90893 1.00548 0.93471 1.62861 1.10049 1.38048 1.20325 1.23164 0.92731 0.93991 1.00449 0.92577 0.91007 0.93950 0.91256 0.92631 0.92255 0.96383 0.92982 0.96814 0.85659 0.93556 0.91485 0.96042 0.91848 0.90642 0.91935 0.90481 0.83364 0.92457 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.91 71.98 0.71 -3.00 16 2 C -0.11 -3.18 6.04 30.59 0.18 -3.00 16 3 C 0.06 2.16 4.66 86.30 0.40 2.56 16 4 N -0.52 -20.03 3.43 -845.12 -2.90 -22.93 16 5 C 0.19 8.74 0.98 44.17 0.04 8.78 16 6 H 0.00 -0.03 4.18 -2.39 -0.01 -0.04 16 7 C -0.49 -27.71 7.20 25.60 0.18 -27.53 16 8 H 0.05 3.01 6.22 -2.91 -0.02 2.99 16 9 C 0.02 1.05 5.45 84.65 0.46 1.51 16 10 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 11 Si 0.94 47.73 24.36 68.60 1.67 49.40 16 12 H -0.27 -13.64 6.87 99.48 0.68 -12.95 16 13 H -0.31 -15.48 7.11 99.48 0.71 -14.78 16 14 H -0.26 -12.42 6.53 99.48 0.65 -11.77 16 15 C -0.15 -6.68 4.58 30.59 0.14 -6.54 16 16 C -0.12 -4.89 8.26 71.98 0.59 -4.30 16 17 C 0.07 2.15 2.86 45.79 0.13 2.28 16 18 H 0.09 2.52 6.31 -2.39 -0.02 2.50 16 19 C -0.18 -5.35 5.96 31.86 0.19 -5.16 16 20 C 0.05 1.22 7.55 86.71 0.65 1.88 16 21 N -0.68 -17.41 5.77 -501.91 -2.90 -20.31 16 22 C 0.03 0.70 6.02 86.45 0.52 1.22 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.07 1.78 6.50 -2.39 -0.02 1.77 16 27 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.06 2.77 5.32 -2.39 -0.01 2.76 16 29 H 0.02 0.67 7.67 -2.39 -0.02 0.65 16 30 H 0.26 15.75 8.31 -92.71 -0.77 14.97 16 31 H 0.01 0.65 3.29 -2.39 -0.01 0.64 16 32 H 0.13 4.79 3.21 -2.39 -0.01 4.78 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 2.67 6.48 -2.39 -0.02 2.66 16 35 H 0.02 1.01 7.53 -2.39 -0.02 0.99 16 36 H 0.06 2.43 4.77 -2.39 -0.01 2.42 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.35 6.79 8.92 -89.69 -0.80 5.99 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 3.15 3.38 -2.39 -0.01 3.15 16 Total: -1.00 -65.31 292.89 0.53 -64.78 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.14 Total: 20.31 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 4.22 Total: -31.28 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -5.50 Total: -103.20 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.67 Total: 49.40 kcal Total: -65.31 0.53 -64.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070903239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.630 kcal (2) G-P(sol) polarization free energy of solvation -65.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds