Wall clock time and date at job start Mon Mar 30 2020 03:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47132 * 2 1 4 4 N 1.46499 * 109.47170 * 120.00177 * 2 1 3 5 5 C 1.36932 * 119.99826 * 294.89929 * 4 2 1 6 6 H 1.08000 * 120.00132 * 37.14789 * 5 4 2 7 7 C 1.38817 * 119.99987 * 217.14151 * 5 4 2 8 8 N 1.31612 * 119.99960 * 21.28226 * 7 5 4 9 9 Si 1.86798 * 119.99910 * 201.27678 * 7 5 4 10 10 H 1.48500 * 109.47304 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47371 * 120.00523 * 9 7 5 12 12 H 1.48503 * 109.47352 * 240.00380 * 9 7 5 13 13 C 1.46495 * 120.00106 * 114.90717 * 4 2 1 14 14 C 1.52999 * 109.46906 * 269.99714 * 13 4 2 15 15 C 1.53004 * 109.47249 * 179.97438 * 14 13 4 16 16 N 1.46903 * 109.47284 * 179.97438 * 15 14 13 17 17 C 1.48540 * 110.99645 * 52.60985 * 16 15 14 18 18 C 1.54933 * 103.22693 * 159.72272 * 17 16 15 19 19 C 1.54602 * 102.91792 * 322.58414 * 18 17 16 20 20 C 1.47900 * 110.99944 * 170.00218 * 16 15 14 21 21 H 1.09003 * 109.46976 * 303.30706 * 1 2 3 22 22 H 1.09003 * 109.47228 * 63.30827 * 1 2 3 23 23 H 1.09002 * 109.46917 * 183.31077 * 1 2 3 24 24 H 1.08999 * 109.47091 * 240.00443 * 2 1 3 25 25 H 1.08995 * 109.47516 * 181.61623 * 3 2 1 26 26 H 1.08994 * 109.47147 * 301.62420 * 3 2 1 27 27 H 1.09007 * 109.46938 * 61.61963 * 3 2 1 28 28 H 0.97004 * 120.00398 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47412 * 29.99638 * 13 4 2 30 30 H 1.08998 * 109.47554 * 149.99887 * 13 4 2 31 31 H 1.08998 * 109.47474 * 299.99899 * 14 13 4 32 32 H 1.09009 * 109.47284 * 60.00026 * 14 13 4 33 33 H 1.08998 * 109.47223 * 300.00571 * 15 14 13 34 34 H 1.08998 * 109.46959 * 60.00326 * 15 14 13 35 35 H 1.08999 * 110.66589 * 278.15482 * 17 16 15 36 36 H 1.08999 * 110.66944 * 41.28500 * 17 16 15 37 37 H 1.09004 * 110.72489 * 204.23184 * 18 17 16 38 38 H 1.08995 * 110.72742 * 80.93798 * 18 17 16 39 39 H 1.09004 * 110.30704 * 263.04315 * 19 18 17 40 40 H 1.09000 * 110.30763 * 140.87876 * 19 18 17 41 41 H 1.09001 * 109.91628 * 333.51221 * 20 16 15 42 42 H 1.08996 * 109.91406 * 94.60843 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7758 -0.1651 2.4371 6 1 0.8340 0.3219 2.6427 7 6 2.7405 -0.2583 3.4310 8 7 4.0014 -0.4529 3.1080 9 14 2.2489 -0.1073 5.2268 10 1 0.7824 0.1059 5.3224 11 1 2.6154 -1.3533 5.9468 12 1 2.9580 1.0449 5.8390 13 6 2.7662 -1.9434 1.0646 14 6 1.7931 -3.1237 1.0928 15 6 2.5741 -4.4321 0.9548 16 7 1.6398 -5.5654 0.9825 17 6 0.5558 -5.3860 -0.0171 18 6 0.0189 -6.8252 -0.2199 19 6 1.3016 -7.6854 -0.1515 20 6 2.3229 -6.8246 0.6149 21 1 -0.3633 0.5643 0.8589 22 1 -0.3634 0.4616 -0.9182 23 1 -0.3633 -1.0260 0.0594 24 1 1.8933 -0.5138 -0.8900 25 1 3.1296 1.4428 -0.0290 26 1 1.6531 1.9647 -0.8750 27 1 1.7005 1.9479 0.9042 28 1 4.6756 -0.5177 3.8024 29 1 3.3109 -1.9440 0.1204 30 1 3.4714 -2.0341 1.8908 31 1 1.2485 -3.1231 2.0370 32 1 1.0879 -3.0330 0.2665 33 1 3.1184 -4.4324 0.0105 34 1 3.2794 -4.5230 1.7808 35 1 -0.2258 -4.7356 0.3755 36 1 0.9550 -4.9892 -0.9506 37 1 -0.4605 -6.9244 -1.1938 38 1 -0.6702 -7.0961 0.5799 39 1 1.6666 -7.9010 -1.1557 40 1 1.1072 -8.6122 0.3883 41 1 3.1802 -6.6094 -0.0230 42 1 2.6510 -7.3452 1.5145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080216461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:58 Heat of formation + Delta-G solvation = 9.069192 kcal Electronic energy + Delta-G solvation = -18174.561544 eV Core-core repulsion = 15575.566650 eV Total energy + Delta-G solvation = -2598.994894 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.76614 -36.56172 -33.45897 -32.21836 -30.39657 -28.85094 -28.06165 -26.13051 -24.91223 -23.08183 -21.40861 -20.63466 -19.71599 -19.44243 -16.32051 -15.88801 -15.43839 -14.95020 -14.39772 -14.05010 -13.83071 -13.48478 -12.96756 -12.63045 -12.44716 -12.37228 -11.95562 -11.42119 -11.33275 -11.30641 -11.14327 -11.09822 -10.91422 -10.73128 -10.59399 -10.55676 -10.40606 -10.26649 -10.05311 -9.82349 -9.42698 -9.39058 -8.39019 -8.13237 -6.45999 -5.68937 -3.26226 3.40763 3.49696 3.52217 4.25659 4.55399 4.74724 4.79009 5.00813 5.37124 5.38893 5.45723 5.56542 5.68570 5.77697 5.79718 5.86404 5.88901 6.00457 6.08504 6.15945 6.21193 6.23818 6.26636 6.39146 6.48846 6.55541 6.68760 6.79113 6.81498 6.85283 6.88697 7.18585 7.24554 7.33727 7.39449 7.44179 7.80189 7.92580 8.62290 9.29699 9.92957 10.51446 11.30499 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.006711 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.382245 B = 4171.525542 C = 4892.932518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 C -0.145 4.145 4 N -0.580 5.580 5 C -0.246 4.246 6 H 0.059 0.941 7 C 0.010 3.990 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.291 1.291 13 C 0.149 3.851 14 C -0.130 4.130 15 C 0.051 3.949 16 N -0.518 5.518 17 C 0.038 3.962 18 C -0.125 4.125 19 C -0.130 4.130 20 C 0.033 3.967 21 H 0.051 0.949 22 H 0.034 0.966 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.252 0.748 29 H 0.017 0.983 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 -9.711 -7.404 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 C -0.204 4.204 4 N -0.300 5.300 5 C -0.376 4.376 6 H 0.076 0.924 7 C -0.189 4.189 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.219 1.219 13 C 0.022 3.978 14 C -0.171 4.171 15 C -0.077 4.077 16 N -0.242 5.242 17 C -0.090 4.090 18 C -0.163 4.163 19 C -0.168 4.168 20 C -0.095 4.095 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.527 -9.720 -6.771 12.681 hybrid contribution 0.237 0.102 0.190 0.320 sum -4.290 -9.618 -6.581 12.418 Atomic orbital electron populations 1.22208 0.98972 1.00525 0.99616 1.20391 0.91948 0.92223 0.89879 1.22040 1.00750 0.97927 0.99666 1.43862 1.64338 1.20695 1.01125 1.18931 0.97335 1.34057 0.87266 0.92369 1.25127 0.94529 1.00682 0.98604 1.69997 0.99405 1.52171 1.31636 0.86403 0.78215 0.77257 0.85979 1.20190 1.21502 1.21857 1.20879 0.93361 0.83308 1.00280 1.22278 0.99720 0.93606 1.01456 1.22340 0.94746 0.90831 0.99798 1.64836 1.10896 1.02237 1.46240 1.23185 0.95178 0.96568 0.94098 1.22501 0.97257 0.95093 1.01483 1.22388 0.95727 0.98757 0.99958 1.22869 0.95960 0.91774 0.98897 0.92977 0.94729 0.93747 0.93937 0.93413 0.95279 0.92368 0.93818 0.96455 0.88758 0.91608 0.93942 0.95554 0.90849 0.89903 0.94014 0.91473 0.90932 0.91894 0.91352 0.94089 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.19 37.16 0.34 -2.58 16 2 C 0.16 3.46 3.37 -67.93 -0.23 3.23 16 3 C -0.14 -3.00 9.11 37.16 0.34 -2.66 16 4 N -0.58 -14.21 2.37 -165.67 -0.39 -14.60 16 5 C -0.25 -6.62 8.04 -15.06 -0.12 -6.74 16 6 H 0.06 1.59 7.14 -52.49 -0.37 1.22 16 7 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 8 N -0.89 -25.51 11.43 55.49 0.63 -24.88 16 9 Si 0.89 21.81 29.60 -169.99 -5.03 16.78 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 C 0.15 3.46 5.28 -4.05 -0.02 3.44 16 14 C -0.13 -2.62 5.20 -26.73 -0.14 -2.76 16 15 C 0.05 0.90 5.03 -3.82 -0.02 0.88 16 16 N -0.52 -8.19 5.40 -230.45 -1.24 -9.43 16 17 C 0.04 0.53 5.10 -1.90 -0.01 0.52 16 18 C -0.13 -1.42 7.06 -24.87 -0.18 -1.59 16 19 C -0.13 -1.40 6.93 -25.37 -0.18 -1.58 16 20 C 0.03 0.44 6.70 -2.76 -0.02 0.42 16 21 H 0.05 1.04 7.32 -51.93 -0.38 0.66 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.86 7.77 -51.93 -0.40 0.46 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.29 7.50 -51.93 -0.39 0.90 16 28 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.02 0.39 7.88 -51.93 -0.41 -0.02 16 30 H 0.09 2.50 5.48 -51.93 -0.28 2.22 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.04 0.82 6.80 -51.92 -0.35 0.47 16 33 H 0.03 0.44 7.81 -51.93 -0.41 0.04 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.23 7.66 -51.93 -0.40 0.83 16 36 H 0.04 0.59 8.00 -51.93 -0.42 0.18 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.53 7.57 -51.93 -0.39 0.13 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -28.25 324.88 -9.45 -37.70 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.99 Total: -1.23 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.32 Total: -9.23 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -1.00 Total: -48.91 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.25 -9.45 -37.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.765 kcal (2) G-P(sol) polarization free energy of solvation -28.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds