Wall clock time and date at job start Mon Mar 30 2020 03:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47132 * 2 1 4 4 N 1.46499 * 109.47170 * 120.00177 * 2 1 3 5 5 C 1.36932 * 119.99826 * 294.89929 * 4 2 1 6 6 H 1.08000 * 120.00132 * 37.14789 * 5 4 2 7 7 C 1.38817 * 119.99987 * 217.14151 * 5 4 2 8 8 N 1.31612 * 119.99960 * 21.28226 * 7 5 4 9 9 Si 1.86798 * 119.99910 * 201.27678 * 7 5 4 10 10 H 1.48500 * 109.47304 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47371 * 120.00523 * 9 7 5 12 12 H 1.48503 * 109.47352 * 240.00380 * 9 7 5 13 13 C 1.46495 * 120.00106 * 114.90717 * 4 2 1 14 14 C 1.52999 * 109.46906 * 269.99714 * 13 4 2 15 15 C 1.53004 * 109.47249 * 179.97438 * 14 13 4 16 16 N 1.46903 * 109.47284 * 179.97438 * 15 14 13 17 17 C 1.48540 * 110.99645 * 52.60985 * 16 15 14 18 18 C 1.54933 * 103.22693 * 159.72272 * 17 16 15 19 19 C 1.54602 * 102.91792 * 322.58414 * 18 17 16 20 20 C 1.47900 * 110.99944 * 170.00218 * 16 15 14 21 21 H 1.09003 * 109.46976 * 303.30706 * 1 2 3 22 22 H 1.09003 * 109.47228 * 63.30827 * 1 2 3 23 23 H 1.09002 * 109.46917 * 183.31077 * 1 2 3 24 24 H 1.08999 * 109.47091 * 240.00443 * 2 1 3 25 25 H 1.08995 * 109.47516 * 181.61623 * 3 2 1 26 26 H 1.08994 * 109.47147 * 301.62420 * 3 2 1 27 27 H 1.09007 * 109.46938 * 61.61963 * 3 2 1 28 28 H 0.97004 * 120.00398 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47412 * 29.99638 * 13 4 2 30 30 H 1.08998 * 109.47554 * 149.99887 * 13 4 2 31 31 H 1.08998 * 109.47474 * 299.99899 * 14 13 4 32 32 H 1.09009 * 109.47284 * 60.00026 * 14 13 4 33 33 H 1.08998 * 109.47223 * 300.00571 * 15 14 13 34 34 H 1.08998 * 109.46959 * 60.00326 * 15 14 13 35 35 H 1.08999 * 110.66589 * 278.15482 * 17 16 15 36 36 H 1.08999 * 110.66944 * 41.28500 * 17 16 15 37 37 H 1.09004 * 110.72489 * 204.23184 * 18 17 16 38 38 H 1.08995 * 110.72742 * 80.93798 * 18 17 16 39 39 H 1.09004 * 110.30704 * 263.04315 * 19 18 17 40 40 H 1.09000 * 110.30763 * 140.87876 * 19 18 17 41 41 H 1.09001 * 109.91628 * 333.51221 * 20 16 15 42 42 H 1.08996 * 109.91406 * 94.60843 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7758 -0.1651 2.4371 6 1 0.8340 0.3219 2.6427 7 6 2.7405 -0.2583 3.4310 8 7 4.0014 -0.4529 3.1080 9 14 2.2489 -0.1073 5.2268 10 1 0.7824 0.1059 5.3224 11 1 2.6154 -1.3533 5.9468 12 1 2.9580 1.0449 5.8390 13 6 2.7662 -1.9434 1.0646 14 6 1.7931 -3.1237 1.0928 15 6 2.5741 -4.4321 0.9548 16 7 1.6398 -5.5654 0.9825 17 6 0.5558 -5.3860 -0.0171 18 6 0.0189 -6.8252 -0.2199 19 6 1.3016 -7.6854 -0.1515 20 6 2.3229 -6.8246 0.6149 21 1 -0.3633 0.5643 0.8589 22 1 -0.3634 0.4616 -0.9182 23 1 -0.3633 -1.0260 0.0594 24 1 1.8933 -0.5138 -0.8900 25 1 3.1296 1.4428 -0.0290 26 1 1.6531 1.9647 -0.8750 27 1 1.7005 1.9479 0.9042 28 1 4.6756 -0.5177 3.8024 29 1 3.3109 -1.9440 0.1204 30 1 3.4714 -2.0341 1.8908 31 1 1.2485 -3.1231 2.0370 32 1 1.0879 -3.0330 0.2665 33 1 3.1184 -4.4324 0.0105 34 1 3.2794 -4.5230 1.7808 35 1 -0.2258 -4.7356 0.3755 36 1 0.9550 -4.9892 -0.9506 37 1 -0.4605 -6.9244 -1.1938 38 1 -0.6702 -7.0961 0.5799 39 1 1.6666 -7.9010 -1.1557 40 1 1.1072 -8.6122 0.3883 41 1 3.1802 -6.6094 -0.0230 42 1 2.6510 -7.3452 1.5145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080216461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:58 Heat of formation + Delta-G solvation = -6.981232 kcal Electronic energy + Delta-G solvation = -18175.257543 eV Core-core repulsion = 15575.566650 eV Total energy + Delta-G solvation = -2599.690893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.92788 -38.35382 -34.89692 -34.13312 -31.96540 -30.08578 -29.53499 -27.74680 -26.74311 -24.68293 -22.81531 -21.67331 -21.31116 -21.07324 -18.20123 -17.08333 -16.82286 -16.66584 -16.00677 -15.77807 -15.31366 -14.89326 -14.54487 -14.13541 -13.82926 -13.74517 -13.41939 -13.07933 -12.97957 -12.93311 -12.61252 -12.56232 -12.29649 -12.23767 -12.15715 -12.02601 -11.92961 -11.73101 -11.66710 -11.41526 -11.21715 -11.18818 -10.46151 -9.34211 -8.47964 -7.75343 -5.36461 1.43524 1.47958 1.56338 2.53139 3.06586 3.31733 3.62603 3.78889 3.85631 4.09728 4.22203 4.33863 4.36927 4.42124 4.59075 4.62144 4.68660 4.72143 4.73462 4.81629 4.93682 4.95847 4.99615 5.03032 5.06571 5.11909 5.15818 5.18998 5.20031 5.25449 5.34084 5.56631 5.62031 5.67890 5.75924 5.90667 6.03435 6.12609 6.54694 7.24829 7.96015 8.47838 9.19876 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.006711 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.382245 B = 4171.525542 C = 4892.932518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 C -0.135 4.135 4 N -0.595 5.595 5 C -0.243 4.243 6 H 0.052 0.948 7 C -0.038 4.038 8 N -0.918 5.918 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.293 1.293 12 H -0.292 1.292 13 C 0.150 3.850 14 C -0.108 4.108 15 C 0.062 3.938 16 N -0.536 5.536 17 C 0.033 3.967 18 C -0.119 4.119 19 C -0.124 4.124 20 C 0.028 3.972 21 H 0.036 0.964 22 H 0.068 0.932 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.248 0.752 29 H 0.021 0.979 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.042 0.958 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 -10.741 -8.799 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 C -0.194 4.194 4 N -0.316 5.316 5 C -0.373 4.373 6 H 0.070 0.930 7 C -0.235 4.235 8 N -0.563 5.563 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.220 1.220 12 H -0.219 1.219 13 C 0.024 3.976 14 C -0.148 4.148 15 C -0.067 4.067 16 N -0.260 5.260 17 C -0.095 4.095 18 C -0.157 4.157 19 C -0.162 4.162 20 C -0.100 4.100 21 H 0.055 0.945 22 H 0.087 0.913 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.859 -10.753 -8.182 14.727 hybrid contribution 0.630 0.435 0.550 0.943 sum -5.229 -10.318 -7.632 13.858 Atomic orbital electron populations 1.22051 0.96815 1.00546 1.00667 1.20648 0.93524 0.92249 0.88973 1.21938 0.99273 0.97874 1.00342 1.44097 1.64443 1.21479 1.01561 1.19044 0.96763 1.33005 0.88524 0.93027 1.25721 0.94574 1.01476 1.01702 1.70113 1.00103 1.53880 1.32225 0.85542 0.78071 0.76715 0.82162 1.19484 1.21955 1.21911 1.20777 0.93543 0.84309 0.99020 1.21940 0.98876 0.93825 1.00147 1.22099 0.94502 0.90501 0.99577 1.64781 1.11155 1.02480 1.47632 1.23230 0.94339 0.98468 0.93425 1.22493 0.97535 0.92936 1.02719 1.22388 0.94495 0.98625 1.00657 1.22969 0.96678 0.90856 0.99451 0.94509 0.91327 0.93930 0.92676 0.95637 0.91479 0.94494 0.94272 0.96013 0.92042 0.94517 0.92934 0.94702 0.92402 0.91217 0.93977 0.89301 0.90934 0.90304 0.89856 0.93926 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.19 71.98 0.66 -4.42 16 2 C 0.15 6.28 3.37 44.99 0.15 6.44 16 3 C -0.14 -5.47 9.11 71.98 0.66 -4.82 16 4 N -0.59 -29.34 2.37 -678.05 -1.61 -30.94 16 5 C -0.24 -13.22 8.04 84.04 0.68 -12.55 16 6 H 0.05 2.85 7.14 -2.91 -0.02 2.83 16 7 C -0.04 -2.13 4.96 84.86 0.42 -1.71 16 8 N -0.92 -54.15 11.43 21.65 0.25 -53.90 16 9 Si 0.95 45.68 29.60 68.60 2.03 47.72 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 13 C 0.15 7.12 5.28 86.38 0.46 7.57 16 14 C -0.11 -4.37 5.20 30.60 0.16 -4.21 16 15 C 0.06 2.17 5.03 86.30 0.43 2.61 16 16 N -0.54 -16.48 5.40 -883.02 -4.77 -21.24 16 17 C 0.03 0.88 5.10 86.65 0.44 1.32 16 18 C -0.12 -2.36 7.06 31.80 0.22 -2.13 16 19 C -0.12 -2.29 6.93 31.47 0.22 -2.07 16 20 C 0.03 0.69 6.70 86.45 0.58 1.27 16 21 H 0.04 1.41 7.32 -2.39 -0.02 1.39 16 22 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 2.13 7.77 -2.39 -0.02 2.12 16 25 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 27 H 0.04 1.62 7.50 -2.38 -0.02 1.60 16 28 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.02 0.98 7.88 -2.39 -0.02 0.96 16 30 H 0.06 3.38 5.48 -2.39 -0.01 3.36 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 2.00 6.80 -2.38 -0.02 1.98 16 33 H 0.03 1.15 7.81 -2.39 -0.02 1.13 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 2.01 7.66 -2.39 -0.02 1.99 16 36 H 0.04 1.11 8.00 -2.39 -0.02 1.09 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.04 1.03 7.57 -2.39 -0.02 1.01 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -61.20 324.88 1.92 -59.27 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.94 Total: 11.80 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 5.08 Total: -12.70 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -6.12 Total: -106.09 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.72 kcal Total: -61.20 1.92 -59.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.292 kcal (2) G-P(sol) polarization free energy of solvation -61.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds