Wall clock time and date at job start Mon Mar 30 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52991 * 109.47243 * 2 1 4 4 H 1.08998 * 109.47490 * 61.57788 * 3 2 1 5 5 C 1.50698 * 109.47308 * 181.58218 * 3 2 1 6 6 H 1.08002 * 120.00292 * 118.51349 * 5 3 2 7 7 C 1.37880 * 120.00016 * 298.79544 * 5 3 2 8 8 N 1.31515 * 119.99792 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00136 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47337 * 89.99832 * 9 7 5 11 11 H 1.48504 * 109.47139 * 209.99675 * 9 7 5 12 12 H 1.48497 * 109.47192 * 329.99550 * 9 7 5 13 13 N 1.46910 * 109.47319 * 301.57983 * 3 2 1 14 14 C 1.46892 * 110.99832 * 287.07432 * 13 3 2 15 15 C 1.53001 * 109.47396 * 84.66084 * 14 13 3 16 16 C 1.46900 * 110.99938 * 163.11470 * 13 3 2 17 17 H 1.08994 * 109.50411 * 311.74641 * 16 13 3 18 18 C 1.53121 * 109.49945 * 191.66095 * 16 13 3 19 19 C 1.53125 * 109.15693 * 182.40718 * 18 16 13 20 20 C 1.53031 * 109.27777 * 57.65827 * 19 18 16 21 21 N 1.46845 * 109.52462 * 300.81813 * 20 19 18 22 22 C 1.46852 * 111.23284 * 61.72362 * 21 20 19 23 23 H 1.08993 * 109.47491 * 175.22894 * 1 2 3 24 24 H 1.09001 * 109.46737 * 295.23438 * 1 2 3 25 25 H 1.09002 * 109.46754 * 55.22895 * 1 2 3 26 26 H 1.09001 * 109.46334 * 239.99658 * 2 1 3 27 27 H 1.08997 * 109.46818 * 120.00128 * 2 1 3 28 28 H 0.96995 * 119.99894 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47056 * 204.65703 * 14 13 3 30 30 H 1.09002 * 109.47126 * 324.65487 * 14 13 3 31 31 H 1.08995 * 109.47565 * 157.21505 * 15 14 13 32 32 H 1.09003 * 109.46811 * 277.21001 * 15 14 13 33 33 H 1.09001 * 109.47333 * 37.20821 * 15 14 13 34 34 H 1.08994 * 109.52501 * 302.31020 * 18 16 13 35 35 H 1.08997 * 109.51954 * 62.44346 * 18 16 13 36 36 H 1.09004 * 109.50044 * 177.60174 * 19 18 16 37 37 H 1.09003 * 109.50018 * 297.71387 * 19 18 16 38 38 H 1.09004 * 109.46373 * 60.83418 * 20 19 18 39 39 H 1.09004 * 109.46414 * 180.80233 * 20 19 18 40 40 H 1.00906 * 111.00282 * 185.83731 * 21 20 19 41 41 H 1.09001 * 109.49718 * 178.28294 * 22 21 20 42 42 H 1.08998 * 109.42648 * 58.31192 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.7001 1.9481 0.9038 5 6 3.5466 1.4426 -0.0392 6 1 4.0651 1.8967 -0.8707 7 6 4.2629 0.8579 0.9836 8 7 3.6315 0.3005 1.9936 9 14 6.1302 0.8575 0.9346 10 1 6.6433 2.0782 1.6067 11 1 6.6435 -0.3466 1.6361 12 1 6.5884 0.8404 -0.4778 13 7 1.5195 2.1459 -1.1799 14 6 2.1931 1.6912 -2.4036 15 6 1.5054 0.4279 -2.9250 16 6 1.6415 3.6013 -1.0215 17 1 1.2574 3.8944 -0.0445 18 6 0.8375 4.3040 -2.1189 19 6 1.0186 5.8185 -1.9828 20 6 2.5080 6.1589 -2.0688 21 7 3.2331 5.4631 -0.9981 22 6 3.1131 4.0059 -1.1343 23 1 -0.3634 -1.0240 -0.0855 24 1 -0.3633 0.4381 0.9296 25 1 -0.3633 0.5861 -0.8442 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.1354 -0.1105 2.7133 29 1 2.1382 2.4735 -3.1606 30 1 3.2377 1.4717 -2.1831 31 1 1.7076 0.3174 -3.9903 32 1 1.8887 -0.4413 -2.3904 33 1 0.4300 0.5074 -2.7656 34 1 1.1953 3.9808 -3.0963 35 1 -0.2178 4.0517 -2.0155 36 1 0.4829 6.3227 -2.7872 37 1 0.6250 6.1470 -1.0209 38 1 2.8977 5.8425 -3.0364 39 1 2.6416 7.2351 -1.9580 40 1 4.2016 5.7454 -0.9745 41 1 3.6853 3.5183 -0.3451 42 1 3.5005 3.6995 -2.1060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082500627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:14 Heat of formation + Delta-G solvation = 8.972708 kcal Electronic energy + Delta-G solvation = -19287.162411 eV Core-core repulsion = 16688.163333 eV Total energy + Delta-G solvation = -2598.999078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.08847 -36.32864 -32.91631 -31.54929 -31.19925 -30.27294 -27.87824 -26.06926 -23.38163 -22.88581 -22.25575 -21.12161 -19.15125 -18.28526 -16.62192 -16.14009 -15.20537 -14.40385 -14.15693 -13.95219 -13.59183 -13.35631 -12.95045 -12.69816 -12.54868 -12.25170 -11.85413 -11.70448 -11.35742 -11.17820 -11.05161 -10.88043 -10.69197 -10.62499 -10.42743 -10.21320 -10.11546 -9.95371 -9.59132 -9.35237 -9.08504 -8.72167 -8.31944 -7.98848 -7.05774 -5.99604 -4.09172 3.25024 3.32936 3.34339 4.37878 4.64716 5.03537 5.24169 5.32628 5.41294 5.47556 5.70743 5.88297 5.90099 6.04472 6.11696 6.16313 6.25273 6.26216 6.38233 6.46448 6.48603 6.52744 6.56035 6.64938 6.76039 6.86309 6.90317 7.06983 7.12942 7.23694 7.25624 7.44023 7.53451 7.70541 7.80066 7.86129 8.04672 8.19501 8.38030 8.55142 8.99417 9.54818 11.00627 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019127 B = 0.010689 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.546062 B = 2618.842835 C = 3478.766877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.544 4.544 6 H 0.067 0.933 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.881 3.119 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.527 5.527 14 C 0.042 3.958 15 C -0.145 4.145 16 C 0.103 3.897 17 H 0.076 0.924 18 C -0.113 4.113 19 C -0.114 4.114 20 C 0.058 3.942 21 N -0.690 5.690 22 C 0.016 3.984 23 H 0.022 0.978 24 H 0.034 0.966 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.261 0.739 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.020 0.980 39 H 0.063 0.937 40 H 0.334 0.666 41 H 0.119 0.881 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.039 6.007 -7.392 9.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.583 4.583 6 H 0.085 0.915 7 C -0.133 4.133 8 N -0.518 5.518 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.250 5.250 14 C -0.086 4.086 15 C -0.202 4.202 16 C -0.007 4.007 17 H 0.094 0.906 18 C -0.151 4.151 19 C -0.153 4.153 20 C -0.072 4.072 21 N -0.321 5.321 22 C -0.114 4.114 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -4.049 5.812 -6.805 9.823 hybrid contribution 2.600 -0.003 -0.664 2.683 sum -1.449 5.809 -7.469 9.573 Atomic orbital electron populations 1.21765 0.99084 0.98290 1.00631 1.21753 0.92064 0.99272 1.02166 1.19275 0.91869 0.90831 0.87307 0.94628 1.21856 0.92677 1.37289 1.06471 0.91501 1.24910 0.97814 0.95037 0.95530 1.69896 1.35046 1.37165 1.09741 0.86769 0.86610 0.77628 0.78050 1.20678 1.21227 1.20119 1.62674 1.55740 1.02420 1.04135 1.22141 0.98819 0.95669 0.91973 1.22023 1.01189 0.98952 0.98035 1.21453 0.92554 0.88606 0.98104 0.90574 1.21681 1.00595 0.93796 0.99033 1.21548 0.95381 0.96729 1.01621 1.21882 0.95023 0.97814 0.92464 1.60364 1.16919 1.07797 1.47015 1.23391 1.00366 0.86052 1.01561 0.95928 0.94696 0.92676 0.93562 0.89902 0.92936 0.93967 0.91872 0.94804 0.91912 0.92553 0.92783 0.91863 0.92419 0.91423 0.96206 0.91867 0.84956 0.86288 0.96339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.63 37.16 0.36 -2.47 16 2 C -0.11 -2.64 4.70 -26.73 -0.13 -2.76 16 3 C 0.21 5.05 1.72 -68.86 -0.12 4.93 16 4 H 0.04 0.96 7.77 -51.93 -0.40 0.56 16 5 C -0.54 -13.66 5.26 -34.44 -0.18 -13.84 16 6 H 0.07 1.66 4.21 -52.49 -0.22 1.44 16 7 C 0.07 1.84 5.31 -17.82 -0.09 1.75 16 8 N -0.88 -24.20 11.42 55.43 0.63 -23.57 16 9 Si 0.88 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.53 -10.70 3.41 -220.01 -0.75 -11.45 16 14 C 0.04 0.81 4.03 -3.83 -0.02 0.80 16 15 C -0.14 -2.55 8.88 37.16 0.33 -2.22 16 16 C 0.10 1.96 2.32 -67.63 -0.16 1.80 16 17 H 0.08 1.60 7.81 -51.93 -0.41 1.20 16 18 C -0.11 -1.81 5.32 -26.60 -0.14 -1.96 16 19 C -0.11 -1.60 6.09 -26.65 -0.16 -1.77 16 20 C 0.06 0.82 6.55 -3.84 -0.03 0.79 16 21 N -0.69 -11.41 6.84 -113.81 -0.78 -12.19 16 22 C 0.02 0.30 4.29 -3.83 -0.02 0.29 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 1.08 6.16 -51.93 -0.32 0.76 16 26 H 0.05 1.05 4.69 -51.93 -0.24 0.81 16 27 H 0.08 2.16 6.21 -51.93 -0.32 1.83 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.04 0.76 5.46 -51.93 -0.28 0.48 16 30 H 0.06 1.37 4.97 -51.93 -0.26 1.11 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.19 5.47 -51.93 -0.28 0.90 16 33 H 0.06 0.99 6.94 -51.93 -0.36 0.63 16 34 H 0.05 0.87 6.28 -51.93 -0.33 0.54 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.33 5.01 8.90 -39.29 -0.35 4.66 16 41 H 0.12 2.66 5.07 -51.93 -0.26 2.40 16 42 H 0.02 0.36 6.60 -51.93 -0.34 0.01 16 LS Contribution 296.63 15.07 4.47 4.47 Total: -1.00 -25.77 296.63 -8.70 -34.47 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.90 Total: 7.41 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.35 Total: -14.66 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.90 Total: -47.21 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.77 -8.70 -34.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082500627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.444 kcal (2) G-P(sol) polarization free energy of solvation -25.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds