Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52991 * 109.47243 * 2 1 4 4 H 1.08998 * 109.47490 * 61.57788 * 3 2 1 5 5 C 1.50698 * 109.47308 * 181.58218 * 3 2 1 6 6 H 1.08002 * 120.00292 * 118.51349 * 5 3 2 7 7 C 1.37880 * 120.00016 * 298.79544 * 5 3 2 8 8 N 1.31515 * 119.99792 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00136 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47337 * 89.99832 * 9 7 5 11 11 H 1.48504 * 109.47139 * 209.99675 * 9 7 5 12 12 H 1.48497 * 109.47192 * 329.99550 * 9 7 5 13 13 N 1.46910 * 109.47319 * 301.57983 * 3 2 1 14 14 C 1.46892 * 110.99832 * 287.07432 * 13 3 2 15 15 C 1.53001 * 109.47396 * 84.66084 * 14 13 3 16 16 C 1.46900 * 110.99938 * 163.11470 * 13 3 2 17 17 H 1.08994 * 109.50411 * 311.74641 * 16 13 3 18 18 C 1.53121 * 109.49945 * 191.66095 * 16 13 3 19 19 C 1.53125 * 109.15693 * 182.40718 * 18 16 13 20 20 C 1.53031 * 109.27777 * 57.65827 * 19 18 16 21 21 N 1.46845 * 109.52462 * 300.81813 * 20 19 18 22 22 C 1.46852 * 111.23284 * 61.72362 * 21 20 19 23 23 H 1.08993 * 109.47491 * 175.22894 * 1 2 3 24 24 H 1.09001 * 109.46737 * 295.23438 * 1 2 3 25 25 H 1.09002 * 109.46754 * 55.22895 * 1 2 3 26 26 H 1.09001 * 109.46334 * 239.99658 * 2 1 3 27 27 H 1.08997 * 109.46818 * 120.00128 * 2 1 3 28 28 H 0.96995 * 119.99894 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47056 * 204.65703 * 14 13 3 30 30 H 1.09002 * 109.47126 * 324.65487 * 14 13 3 31 31 H 1.08995 * 109.47565 * 157.21505 * 15 14 13 32 32 H 1.09003 * 109.46811 * 277.21001 * 15 14 13 33 33 H 1.09001 * 109.47333 * 37.20821 * 15 14 13 34 34 H 1.08994 * 109.52501 * 302.31020 * 18 16 13 35 35 H 1.08997 * 109.51954 * 62.44346 * 18 16 13 36 36 H 1.09004 * 109.50044 * 177.60174 * 19 18 16 37 37 H 1.09003 * 109.50018 * 297.71387 * 19 18 16 38 38 H 1.09004 * 109.46373 * 60.83418 * 20 19 18 39 39 H 1.09004 * 109.46414 * 180.80233 * 20 19 18 40 40 H 1.00906 * 111.00282 * 185.83731 * 21 20 19 41 41 H 1.09001 * 109.49718 * 178.28294 * 22 21 20 42 42 H 1.08998 * 109.42648 * 58.31192 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.7001 1.9481 0.9038 5 6 3.5466 1.4426 -0.0392 6 1 4.0651 1.8967 -0.8707 7 6 4.2629 0.8579 0.9836 8 7 3.6315 0.3005 1.9936 9 14 6.1302 0.8575 0.9346 10 1 6.6433 2.0782 1.6067 11 1 6.6435 -0.3466 1.6361 12 1 6.5884 0.8404 -0.4778 13 7 1.5195 2.1459 -1.1799 14 6 2.1931 1.6912 -2.4036 15 6 1.5054 0.4279 -2.9250 16 6 1.6415 3.6013 -1.0215 17 1 1.2574 3.8944 -0.0445 18 6 0.8375 4.3040 -2.1189 19 6 1.0186 5.8185 -1.9828 20 6 2.5080 6.1589 -2.0688 21 7 3.2331 5.4631 -0.9981 22 6 3.1131 4.0059 -1.1343 23 1 -0.3634 -1.0240 -0.0855 24 1 -0.3633 0.4381 0.9296 25 1 -0.3633 0.5861 -0.8442 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.1354 -0.1105 2.7133 29 1 2.1382 2.4735 -3.1606 30 1 3.2377 1.4717 -2.1831 31 1 1.7076 0.3174 -3.9903 32 1 1.8887 -0.4413 -2.3904 33 1 0.4300 0.5074 -2.7656 34 1 1.1953 3.9808 -3.0963 35 1 -0.2178 4.0517 -2.0155 36 1 0.4829 6.3227 -2.7872 37 1 0.6250 6.1470 -1.0209 38 1 2.8977 5.8425 -3.0364 39 1 2.6416 7.2351 -1.9580 40 1 4.2016 5.7454 -0.9745 41 1 3.6853 3.5183 -0.3451 42 1 3.5005 3.6995 -2.1060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082500627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = -7.594919 kcal Electronic energy + Delta-G solvation = -19287.880837 eV Core-core repulsion = 16688.163333 eV Total energy + Delta-G solvation = -2599.717504 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63443 -37.84646 -34.74701 -33.24963 -32.60220 -31.80294 -29.48529 -27.86883 -25.01103 -24.39711 -23.76199 -22.60558 -20.87078 -19.79922 -18.46721 -17.64335 -16.97362 -16.10001 -15.58511 -15.44705 -15.15570 -14.79714 -14.61900 -14.27012 -13.99243 -13.61794 -13.48688 -13.40173 -13.02993 -12.89462 -12.68506 -12.58840 -12.36377 -12.07700 -12.02008 -11.81708 -11.57498 -11.52478 -11.28664 -11.03624 -10.81930 -10.51499 -10.30924 -9.33664 -8.79110 -7.98471 -6.14791 1.36912 1.39872 1.46397 2.41996 3.20193 3.30143 3.59706 4.04314 4.12010 4.20953 4.33524 4.41923 4.53033 4.65882 4.72075 4.79469 4.83022 4.85052 4.89886 4.95820 4.99235 5.05963 5.15746 5.19202 5.22661 5.29623 5.33094 5.48632 5.49835 5.57693 5.60041 5.60924 5.79100 5.98134 6.11272 6.20454 6.28193 6.50395 6.55937 6.81417 7.04909 7.51599 8.98120 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019127 B = 0.010689 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.546062 B = 2618.842835 C = 3478.766877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 C 0.223 3.777 4 H -0.007 1.007 5 C -0.537 4.537 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.937 3.063 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.522 5.522 14 C 0.046 3.954 15 C -0.138 4.138 16 C 0.100 3.900 17 H 0.048 0.952 18 C -0.104 4.104 19 C -0.111 4.111 20 C 0.057 3.943 21 N -0.700 5.700 22 C 0.030 3.970 23 H 0.042 0.958 24 H 0.025 0.975 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.258 0.742 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.087 0.913 40 H 0.342 0.658 41 H 0.080 0.920 42 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.411 7.136 -9.686 12.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C 0.115 3.885 4 H 0.010 0.990 5 C -0.576 4.576 6 H 0.087 0.913 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.764 3.236 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.245 5.245 14 C -0.082 4.082 15 C -0.195 4.195 16 C -0.010 4.010 17 H 0.066 0.934 18 C -0.142 4.142 19 C -0.149 4.149 20 C -0.072 4.072 21 N -0.331 5.331 22 C -0.100 4.100 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.106 0.894 40 H 0.160 0.840 41 H 0.098 0.902 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -4.417 6.960 -9.119 12.292 hybrid contribution 2.696 -0.280 0.031 2.711 sum -1.721 6.680 -9.088 11.409 Atomic orbital electron populations 1.21625 0.96703 0.99658 1.00523 1.21610 0.94147 0.98333 1.00674 1.19000 0.91203 0.91152 0.87108 0.98951 1.22116 0.93621 1.35846 1.06032 0.91314 1.25576 1.01447 0.95333 0.95563 1.70038 1.36197 1.38527 1.10430 0.85876 0.82360 0.77236 0.78081 1.20694 1.21423 1.19451 1.62668 1.55336 1.03123 1.03370 1.22136 0.97336 0.97113 0.91653 1.21937 1.00996 0.97101 0.99466 1.21491 0.93192 0.88110 0.98188 0.93408 1.21603 1.00013 0.95025 0.97564 1.21567 0.95689 0.95172 1.02511 1.22004 0.94616 0.98873 0.91733 1.60312 1.17976 1.06230 1.48618 1.22984 0.99526 0.87722 0.99789 0.93940 0.95588 0.91731 0.93178 0.93214 0.93299 0.92102 0.94432 0.92030 0.93548 0.92153 0.92193 0.91521 0.89270 0.92133 0.95556 0.89417 0.84032 0.90204 0.96463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.63 71.99 0.69 -4.41 16 2 C -0.11 -5.14 4.70 30.59 0.14 -5.00 16 3 C 0.22 10.87 1.72 44.16 0.08 10.94 16 4 H -0.01 -0.43 7.77 -2.39 -0.02 -0.45 16 5 C -0.54 -27.71 5.26 25.60 0.13 -27.58 16 6 H 0.07 3.48 4.21 -2.91 -0.01 3.47 16 7 C 0.02 1.10 5.31 84.66 0.45 1.55 16 8 N -0.91 -52.10 11.42 21.45 0.25 -51.86 16 9 Si 0.94 43.08 29.54 68.60 2.03 45.11 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 N -0.52 -21.16 3.41 -849.98 -2.90 -24.06 16 14 C 0.05 1.69 4.03 86.31 0.35 2.04 16 15 C -0.14 -4.56 8.88 71.98 0.64 -3.92 16 16 C 0.10 3.79 2.32 44.97 0.10 3.89 16 17 H 0.05 2.07 7.81 -2.39 -0.02 2.05 16 18 C -0.10 -3.10 5.32 30.68 0.16 -2.93 16 19 C -0.11 -2.77 6.09 30.65 0.19 -2.58 16 20 C 0.06 1.43 6.55 86.32 0.57 1.99 16 21 N -0.70 -22.25 6.84 -514.00 -3.52 -25.77 16 22 C 0.03 1.14 4.29 86.32 0.37 1.52 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 2.44 6.16 -2.39 -0.01 2.43 16 26 H 0.05 2.30 4.69 -2.39 -0.01 2.29 16 27 H 0.05 2.68 6.21 -2.39 -0.01 2.66 16 28 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.06 2.04 5.46 -2.39 -0.01 2.03 16 30 H 0.04 1.61 4.97 -2.39 -0.01 1.60 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.69 5.47 -2.39 -0.01 1.67 16 33 H 0.06 1.95 6.94 -2.39 -0.02 1.93 16 34 H 0.06 1.73 6.28 -2.39 -0.02 1.71 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.34 9.83 8.90 -89.69 -0.80 9.04 16 41 H 0.08 3.67 5.07 -2.39 -0.01 3.66 16 42 H 0.02 0.65 6.60 -2.39 -0.02 0.64 16 Total: -1.00 -56.95 296.63 -0.06 -57.01 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.21 Total: 24.05 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 3.87 Total: -24.48 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -6.17 Total: -101.68 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -56.95 -0.06 -57.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082500627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.412 kcal (2) G-P(sol) polarization free energy of solvation -56.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds