Wall clock time and date at job start Mon Mar 30 2020 03:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47395 * 2 1 4 4 N 1.46900 * 109.47243 * 180.02562 * 3 2 1 5 5 C 1.46902 * 111.00005 * 170.00109 * 4 3 2 6 6 C 1.53001 * 109.47217 * 293.95128 * 5 4 3 7 7 C 1.50694 * 109.47168 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46985 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47276 * 299.99832 * 11 9 7 14 14 H 1.48498 * 109.47150 * 60.00043 * 11 9 7 15 15 C 1.46897 * 110.99808 * 293.95277 * 4 3 2 16 16 H 1.08998 * 109.50420 * 54.92579 * 15 4 3 17 17 C 1.53123 * 109.50437 * 175.00237 * 15 4 3 18 18 C 1.53117 * 109.16403 * 177.59853 * 17 15 4 19 19 C 1.53046 * 109.27572 * 302.34343 * 18 17 15 20 20 N 1.46845 * 109.52235 * 59.17991 * 19 18 17 21 21 C 1.46852 * 111.20044 * 298.25849 * 20 19 18 22 22 H 1.08997 * 109.47588 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46677 * 299.99766 * 1 2 3 24 24 H 1.08999 * 109.47580 * 59.99638 * 1 2 3 25 25 H 1.09006 * 109.46677 * 240.00234 * 2 1 3 26 26 H 1.08999 * 109.47580 * 120.00362 * 2 1 3 27 27 H 1.09002 * 109.47304 * 60.00056 * 3 2 1 28 28 H 1.08997 * 109.47034 * 300.00139 * 3 2 1 29 29 H 1.09002 * 109.46978 * 173.95398 * 5 4 3 30 30 H 1.08998 * 109.47251 * 53.94916 * 5 4 3 31 31 H 1.09007 * 109.46922 * 59.99765 * 6 5 4 32 32 H 1.09003 * 109.46836 * 300.00520 * 6 5 4 33 33 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 34 34 H 1.09010 * 109.51958 * 297.50262 * 17 15 4 35 35 H 1.09003 * 109.52167 * 57.68843 * 17 15 4 36 36 H 1.08999 * 109.50581 * 62.28074 * 18 17 15 37 37 H 1.08996 * 109.50663 * 182.36679 * 18 17 15 38 38 H 1.08992 * 109.46242 * 179.19403 * 19 18 17 39 39 H 1.09001 * 109.46139 * 299.16414 * 19 18 17 40 40 H 1.00904 * 111.00075 * 174.16301 * 20 19 18 41 41 H 1.09008 * 109.45901 * 301.72704 * 21 20 19 42 42 H 1.08994 * 109.46345 * 181.76163 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0354 2.7930 -0.2388 6 6 3.6709 3.2399 -1.6559 7 6 4.2114 4.6252 -1.9004 8 1 4.7604 5.1357 -1.1230 9 6 4.0050 5.2410 -3.1167 10 7 3.3369 4.6192 -4.0636 11 14 4.6745 6.9584 -3.4195 12 1 4.3208 7.3922 -4.7951 13 1 4.0836 7.9006 -2.4356 14 1 6.1518 6.9475 -3.2690 15 6 4.0359 0.8854 1.2524 16 1 3.6152 -0.1069 1.4149 17 6 5.5615 0.7859 1.1660 18 6 6.1071 0.2612 2.4969 19 6 5.6657 1.1941 3.6270 20 7 4.1991 1.2549 3.6685 21 6 3.6545 1.8002 2.4185 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 5.1197 2.7851 -0.1279 30 1 3.6013 3.4847 0.4832 31 1 2.5865 3.2478 -1.7668 32 1 4.1049 2.5482 -2.3779 33 1 3.1915 5.0526 -4.9191 34 1 5.8369 0.1010 0.3639 35 1 5.9800 1.7719 0.9640 36 1 5.7189 -0.7408 2.6798 37 1 7.1958 0.2279 2.4562 38 1 6.0405 0.8155 4.5778 39 1 6.0657 2.1927 3.4507 40 1 3.8816 1.7881 4.4642 41 1 4.0640 2.7960 2.2479 42 1 2.5688 1.8619 2.4917 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082500984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:53 Heat of formation + Delta-G solvation = -14.321049 kcal Electronic energy + Delta-G solvation = -18256.845999 eV Core-core repulsion = 15656.836828 eV Total energy + Delta-G solvation = -2600.009171 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40119 -36.35332 -33.50989 -32.69585 -31.67048 -30.19656 -28.24486 -25.59375 -24.02826 -23.60273 -22.11489 -20.91136 -20.46435 -18.31780 -16.91388 -16.15752 -15.08899 -14.84023 -14.67067 -14.33601 -14.20528 -13.91963 -13.74126 -12.95589 -12.84383 -12.66885 -12.56683 -12.12310 -11.71972 -11.54447 -11.23447 -11.06908 -10.97047 -10.83025 -10.64732 -10.60365 -10.43552 -10.24057 -9.88196 -9.66544 -9.29455 -9.09294 -8.48767 -8.30920 -7.58295 -5.98381 -4.00714 3.33112 3.37687 3.39806 4.14795 4.42811 4.57152 4.99912 5.06867 5.08142 5.26584 5.36628 5.37207 5.37911 5.48477 5.62325 5.65702 5.74861 5.84444 5.89736 5.94123 5.95784 6.07623 6.13547 6.18563 6.29105 6.34515 6.42076 6.48892 6.58650 6.63314 6.67430 6.98090 7.03840 7.34282 7.57677 7.66074 7.84449 7.94213 8.11491 8.45491 9.06429 9.62623 11.12900 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.006595 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.464415 B = 4244.823019 C = 5223.740503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.050 3.950 4 N -0.529 5.529 5 C 0.058 3.942 6 C 0.029 3.971 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.891 3.109 12 H -0.287 1.287 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.088 3.912 16 H 0.084 0.916 17 C -0.117 4.117 18 C -0.115 4.115 19 C 0.056 3.944 20 N -0.687 5.687 21 C 0.023 3.977 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.028 0.972 40 H 0.337 0.663 41 H 0.036 0.964 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 -8.574 13.185 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.077 4.077 4 N -0.252 5.252 5 C -0.069 4.069 6 C -0.009 4.009 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.719 3.281 12 H -0.212 1.212 13 H -0.204 1.204 14 H -0.203 1.203 15 C -0.022 4.022 16 H 0.102 0.898 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.073 4.073 20 N -0.318 5.318 21 C -0.108 4.108 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.154 0.846 41 H 0.054 0.946 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.221 -9.502 12.393 15.618 hybrid contribution 0.273 2.570 0.549 2.642 sum 0.494 -6.932 12.942 14.690 Atomic orbital electron populations 1.21727 0.96213 1.01084 1.01710 1.21530 0.94886 0.97194 1.02124 1.22214 0.87921 0.96337 1.01273 1.62377 1.07139 1.24608 1.31096 1.22396 0.98787 0.85565 1.00111 1.19094 0.96779 0.95387 0.89600 1.21156 1.35151 1.00971 0.98846 0.93028 1.24982 0.95302 0.97763 0.96171 1.69963 1.40714 1.37688 1.04805 0.86685 0.79450 0.84788 0.77220 1.21236 1.20356 1.20260 1.21718 0.95120 0.98209 0.87108 0.89780 1.21693 0.94913 1.02027 0.96839 1.21565 0.99809 0.99487 0.94459 1.21932 0.88006 0.98282 0.99081 1.60289 1.08892 1.57896 1.04718 1.22700 0.99765 0.97440 0.90853 0.93071 0.93237 0.92532 0.91330 0.92474 0.95564 0.89600 0.91820 0.96389 0.96520 0.95773 0.92958 0.91029 0.91608 0.91387 0.91668 0.91206 0.95348 0.84587 0.94619 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.15 0.37 -1.49 16 2 C -0.12 -1.71 5.87 -26.74 -0.16 -1.87 16 3 C 0.05 0.86 4.65 -3.83 -0.02 0.84 16 4 N -0.53 -9.65 4.50 -226.55 -1.02 -10.67 16 5 C 0.06 1.23 3.97 -3.82 -0.02 1.22 16 6 C 0.03 0.75 4.92 -27.89 -0.14 0.62 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 11 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.09 1.35 2.23 -67.63 -0.15 1.20 16 16 H 0.08 1.29 6.26 -51.93 -0.32 0.96 16 17 C -0.12 -1.70 5.17 -26.61 -0.14 -1.84 16 18 C -0.11 -1.36 6.09 -26.65 -0.16 -1.52 16 19 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 20 N -0.69 -8.47 6.85 -113.81 -0.78 -9.25 16 21 C 0.02 0.34 5.16 -3.83 -0.02 0.32 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.78 6.45 -51.93 -0.34 0.45 16 27 H 0.03 0.43 6.20 -51.93 -0.32 0.11 16 28 H 0.09 1.68 6.08 -51.93 -0.32 1.37 16 29 H 0.06 1.35 5.83 -51.93 -0.30 1.05 16 30 H 0.02 0.38 6.83 -51.93 -0.35 0.03 16 31 H 0.02 0.46 6.37 -51.92 -0.33 0.13 16 32 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.07 1.05 6.12 -51.93 -0.32 0.74 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.34 3.56 8.90 -39.29 -0.35 3.21 16 41 H 0.04 0.58 6.57 -51.92 -0.34 0.23 16 42 H 0.07 1.05 6.45 -51.93 -0.33 0.71 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -29.60 314.10 -9.61 -39.21 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.40 Total: 0.99 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.86 Total: -15.52 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -1.06 Total: -46.18 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.60 -9.61 -39.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082500984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.887 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds