Wall clock time and date at job start Mon Mar 30 2020 03:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47395 * 2 1 4 4 N 1.46900 * 109.47243 * 180.02562 * 3 2 1 5 5 C 1.46902 * 111.00005 * 170.00109 * 4 3 2 6 6 C 1.53001 * 109.47217 * 293.95128 * 5 4 3 7 7 C 1.50694 * 109.47168 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46985 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47276 * 299.99832 * 11 9 7 14 14 H 1.48498 * 109.47150 * 60.00043 * 11 9 7 15 15 C 1.46897 * 110.99808 * 293.95277 * 4 3 2 16 16 H 1.08998 * 109.50420 * 54.92579 * 15 4 3 17 17 C 1.53123 * 109.50437 * 175.00237 * 15 4 3 18 18 C 1.53117 * 109.16403 * 177.59853 * 17 15 4 19 19 C 1.53046 * 109.27572 * 302.34343 * 18 17 15 20 20 N 1.46845 * 109.52235 * 59.17991 * 19 18 17 21 21 C 1.46852 * 111.20044 * 298.25849 * 20 19 18 22 22 H 1.08997 * 109.47588 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46677 * 299.99766 * 1 2 3 24 24 H 1.08999 * 109.47580 * 59.99638 * 1 2 3 25 25 H 1.09006 * 109.46677 * 240.00234 * 2 1 3 26 26 H 1.08999 * 109.47580 * 120.00362 * 2 1 3 27 27 H 1.09002 * 109.47304 * 60.00056 * 3 2 1 28 28 H 1.08997 * 109.47034 * 300.00139 * 3 2 1 29 29 H 1.09002 * 109.46978 * 173.95398 * 5 4 3 30 30 H 1.08998 * 109.47251 * 53.94916 * 5 4 3 31 31 H 1.09007 * 109.46922 * 59.99765 * 6 5 4 32 32 H 1.09003 * 109.46836 * 300.00520 * 6 5 4 33 33 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 34 34 H 1.09010 * 109.51958 * 297.50262 * 17 15 4 35 35 H 1.09003 * 109.52167 * 57.68843 * 17 15 4 36 36 H 1.08999 * 109.50581 * 62.28074 * 18 17 15 37 37 H 1.08996 * 109.50663 * 182.36679 * 18 17 15 38 38 H 1.08992 * 109.46242 * 179.19403 * 19 18 17 39 39 H 1.09001 * 109.46139 * 299.16414 * 19 18 17 40 40 H 1.00904 * 111.00075 * 174.16301 * 20 19 18 41 41 H 1.09008 * 109.45901 * 301.72704 * 21 20 19 42 42 H 1.08994 * 109.46345 * 181.76163 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0354 2.7930 -0.2388 6 6 3.6709 3.2399 -1.6559 7 6 4.2114 4.6252 -1.9004 8 1 4.7604 5.1357 -1.1230 9 6 4.0050 5.2410 -3.1167 10 7 3.3369 4.6192 -4.0636 11 14 4.6745 6.9584 -3.4195 12 1 4.3208 7.3922 -4.7951 13 1 4.0836 7.9006 -2.4356 14 1 6.1518 6.9475 -3.2690 15 6 4.0359 0.8854 1.2524 16 1 3.6152 -0.1069 1.4149 17 6 5.5615 0.7859 1.1660 18 6 6.1071 0.2612 2.4969 19 6 5.6657 1.1941 3.6270 20 7 4.1991 1.2549 3.6685 21 6 3.6545 1.8002 2.4185 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 5.1197 2.7851 -0.1279 30 1 3.6013 3.4847 0.4832 31 1 2.5865 3.2478 -1.7668 32 1 4.1049 2.5482 -2.3779 33 1 3.1915 5.0526 -4.9191 34 1 5.8369 0.1010 0.3639 35 1 5.9800 1.7719 0.9640 36 1 5.7189 -0.7408 2.6798 37 1 7.1958 0.2279 2.4562 38 1 6.0405 0.8155 4.5778 39 1 6.0657 2.1927 3.4507 40 1 3.8816 1.7881 4.4642 41 1 4.0640 2.7960 2.2479 42 1 2.5688 1.8619 2.4917 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082500984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:52 Heat of formation + Delta-G solvation = -34.554800 kcal Electronic energy + Delta-G solvation = -18257.723401 eV Core-core repulsion = 15656.836828 eV Total energy + Delta-G solvation = -2600.886572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68566 -37.61542 -35.39910 -34.18383 -32.81122 -31.89035 -29.65610 -27.25322 -25.64259 -24.70463 -23.50062 -22.54703 -21.64056 -19.68538 -18.66365 -17.73195 -16.67483 -16.30430 -16.00695 -15.86589 -15.51405 -15.24818 -14.89377 -14.46784 -14.16594 -13.97064 -13.85806 -13.60400 -13.34687 -13.08823 -12.82169 -12.53850 -12.48268 -12.31450 -12.10875 -11.96415 -11.65323 -11.55617 -11.37759 -11.28385 -11.13185 -11.06153 -10.53029 -9.54047 -9.04190 -8.21163 -6.32769 1.37733 1.40984 1.49003 2.38447 2.96129 3.11759 3.33870 3.83246 3.92965 3.99654 4.11189 4.19704 4.27284 4.35496 4.39764 4.47704 4.56873 4.65044 4.68506 4.72657 4.78042 4.83060 4.96118 4.97362 5.02223 5.09623 5.14163 5.20623 5.30501 5.36749 5.41146 5.44769 5.45782 5.67857 5.78496 5.93128 6.12492 6.34123 6.40408 6.45406 6.84107 7.36108 8.90749 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.006595 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.464415 B = 4244.823019 C = 5223.740503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C 0.052 3.948 4 N -0.540 5.540 5 C 0.080 3.920 6 C 0.038 3.962 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.003 3.997 10 N -0.930 5.930 11 Si 0.964 3.036 12 H -0.281 1.281 13 H -0.267 1.267 14 H -0.267 1.267 15 C 0.090 3.910 16 H 0.093 0.907 17 C -0.118 4.118 18 C -0.109 4.109 19 C 0.055 3.945 20 N -0.683 5.683 21 C 0.032 3.968 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.015 0.985 31 H -0.006 1.006 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.020 0.980 40 H 0.350 0.650 41 H 0.015 0.985 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 -8.750 15.067 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.076 4.076 4 N -0.263 5.263 5 C -0.047 4.047 6 C 0.001 3.999 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.195 4.195 10 N -0.570 5.570 11 Si 0.789 3.211 12 H -0.206 1.206 13 H -0.192 1.192 14 H -0.192 1.192 15 C -0.019 4.019 16 H 0.111 0.889 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.075 4.075 20 N -0.315 5.315 21 C -0.099 4.099 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.012 0.988 32 H 0.008 0.992 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.039 0.961 40 H 0.168 0.832 41 H 0.034 0.966 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.765 -9.688 14.305 17.293 hybrid contribution 0.092 2.567 -0.033 2.568 sum 0.857 -7.121 14.272 15.973 Atomic orbital electron populations 1.21702 0.94522 1.02452 1.01660 1.21459 0.96293 0.94872 1.02191 1.22195 0.87280 0.98183 0.99902 1.62306 1.07921 1.22533 1.33556 1.21965 0.98711 0.87312 0.96754 1.18913 0.94885 0.94245 0.91881 1.21578 1.35468 1.02040 0.99398 0.92509 1.25947 0.95367 1.02394 0.95782 1.70105 1.41818 1.39735 1.05338 0.85516 0.79107 0.79131 0.77387 1.20621 1.19213 1.19155 1.21768 0.95668 0.98396 0.86034 0.88902 1.21696 0.94262 1.00977 0.98617 1.21548 1.00822 0.99648 0.92658 1.22024 0.87309 0.97934 1.00188 1.60281 1.09551 1.57658 1.04034 1.22500 0.99680 0.96077 0.91631 0.90966 0.92328 0.93586 0.92428 0.91083 0.94806 0.93011 0.91893 0.96652 0.98798 0.99164 0.92719 0.91703 0.93494 0.90655 0.89967 0.88557 0.96123 0.83173 0.96642 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.91 71.98 0.71 -2.74 16 2 C -0.11 -3.10 5.87 30.59 0.18 -2.92 16 3 C 0.05 1.82 4.65 86.30 0.40 2.22 16 4 N -0.54 -20.11 4.50 -870.68 -3.91 -24.03 16 5 C 0.08 3.52 3.97 86.30 0.34 3.86 16 6 C 0.04 2.10 4.92 29.85 0.15 2.25 16 7 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.00 0.19 5.46 84.66 0.46 0.65 16 10 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 11 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 15 C 0.09 2.70 2.23 44.97 0.10 2.80 16 16 H 0.09 2.67 6.26 -2.39 -0.01 2.66 16 17 C -0.12 -3.34 5.17 30.67 0.16 -3.18 16 18 C -0.11 -2.31 6.09 30.65 0.19 -2.12 16 19 C 0.05 1.10 6.55 86.33 0.57 1.67 16 20 N -0.68 -15.19 6.85 -513.99 -3.52 -18.70 16 21 C 0.03 0.90 5.16 86.33 0.45 1.35 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.07 1.81 6.45 -2.39 -0.02 1.79 16 27 H 0.03 1.12 6.20 -2.39 -0.01 1.11 16 28 H 0.05 2.15 6.08 -2.39 -0.01 2.14 16 29 H 0.06 2.76 5.83 -2.39 -0.01 2.75 16 30 H 0.02 0.68 6.83 -2.39 -0.02 0.66 16 31 H -0.01 -0.37 6.37 -2.38 -0.02 -0.38 16 32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.05 1.50 6.12 -2.39 -0.01 1.49 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.35 6.47 8.90 -89.69 -0.80 5.67 16 41 H 0.02 0.49 6.57 -2.38 -0.02 0.48 16 42 H 0.07 1.98 6.45 -2.39 -0.02 1.96 16 Total: -1.00 -64.83 314.10 -1.00 -65.83 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.18 Total: 15.33 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 3.94 Total: -27.90 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -7.15 Total: -100.17 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.83 -1.00 -65.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082500984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.275 kcal (2) G-P(sol) polarization free energy of solvation -64.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds