Wall clock time and date at job start Mon Mar 30 2020 03:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 N 1.46900 * 109.47612 * 120.00436 * 2 1 3 5 5 C 1.48003 * 110.99790 * 66.24003 * 4 2 1 6 6 C 1.50444 * 112.82508 * 84.84299 * 5 4 2 7 7 C 1.54301 * 108.50106 * 93.72699 * 6 5 4 8 8 C 1.45884 * 112.18955 * 281.46462 * 7 6 5 9 9 H 1.08997 * 108.93883 * 300.51644 * 8 7 6 10 10 N 1.46897 * 108.94360 * 181.81521 * 8 7 6 11 11 C 1.46904 * 110.99641 * 83.70615 * 10 8 7 12 12 C 1.50698 * 109.46630 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00573 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99952 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99847 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00010 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47242 * 60.00006 * 16 14 12 18 18 H 1.48507 * 109.46868 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47138 * 299.99581 * 16 14 12 20 20 C 1.54313 * 112.11365 * 61.16233 * 8 7 6 21 21 C 1.47999 * 111.00383 * 194.96324 * 4 2 1 22 22 H 1.09000 * 109.47392 * 294.00042 * 1 2 3 23 23 H 1.08998 * 109.47655 * 54.00092 * 1 2 3 24 24 H 1.09004 * 109.47152 * 174.00639 * 1 2 3 25 25 H 1.09002 * 109.47317 * 240.00353 * 2 1 3 26 26 H 1.09005 * 109.46823 * 60.00495 * 3 2 1 27 27 H 1.09002 * 109.47423 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47538 * 300.00214 * 3 2 1 29 29 H 1.09005 * 108.81331 * 323.97796 * 5 4 2 30 30 H 1.09006 * 108.81188 * 205.70756 * 5 4 2 31 31 H 1.08996 * 109.62913 * 334.02167 * 6 5 4 32 32 H 1.09005 * 109.79276 * 213.52807 * 6 5 4 33 33 H 1.08997 * 108.94475 * 160.76725 * 7 6 5 34 34 H 1.09001 * 108.86722 * 42.10598 * 7 6 5 35 35 H 1.00902 * 110.99643 * 319.75621 * 10 8 7 36 36 H 1.08996 * 109.46853 * 300.00065 * 11 10 8 37 37 H 1.08991 * 109.47147 * 60.00373 * 11 10 8 38 38 H 0.97001 * 120.00258 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.63251 * 41.12345 * 20 8 7 40 40 H 1.08998 * 109.63241 * 161.72442 * 20 8 7 41 41 H 1.09001 * 108.80946 * 312.20782 * 21 4 2 42 42 H 1.08998 * 108.81049 * 70.58741 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.6717 -2.1306 1.1607 6 6 2.6703 -2.9523 0.3920 7 6 3.7084 -3.5159 1.3848 8 6 4.7027 -2.5193 1.7673 9 1 5.2225 -2.1766 0.8727 10 7 5.6760 -3.1408 2.6752 11 6 6.7191 -3.8505 1.9226 12 6 7.6966 -4.4741 2.8852 13 1 7.5568 -4.3555 3.9496 14 6 8.7695 -5.1962 2.4072 15 7 8.9395 -5.3412 1.1112 16 14 9.9808 -5.9698 3.6005 17 1 9.2655 -6.9295 4.4793 18 1 11.0353 -6.6873 2.8397 19 1 10.6043 -4.9082 4.4307 20 6 4.0652 -1.3037 2.4726 21 6 3.4550 -0.4112 1.4254 22 1 -0.3634 0.4180 0.9388 23 1 -0.3634 0.6040 -0.8314 24 1 -0.3634 -1.0221 -0.1073 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 0.6921 -2.2428 0.6959 30 1 1.6188 -2.5070 2.1823 31 1 3.1714 -2.3244 -0.3447 32 1 2.1620 -3.7741 -0.1123 33 1 4.2160 -4.3628 0.9232 34 1 3.1897 -3.8596 2.2798 35 1 5.2180 -3.7583 3.3286 36 1 6.2611 -4.6303 1.3142 37 1 7.2436 -3.1467 1.2766 38 1 9.6945 -5.8489 0.7748 39 1 3.2922 -1.6439 3.1617 40 1 4.8315 -0.7543 3.0194 41 1 3.9924 -0.5502 0.4874 42 1 3.5642 0.6261 1.7420 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083421815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:46 Heat of formation + Delta-G solvation = -6.290349 kcal Electronic energy + Delta-G solvation = -18070.163322 eV Core-core repulsion = 15470.502388 eV Total energy + Delta-G solvation = -2599.660934 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64463 -36.66901 -33.75398 -32.37214 -31.86184 -29.96568 -27.61454 -26.45750 -25.14353 -23.62411 -21.53857 -21.33794 -20.03922 -18.95058 -16.68917 -16.26144 -15.61767 -15.02063 -14.67374 -14.46521 -13.97007 -13.47101 -13.17962 -13.00515 -12.83555 -12.40515 -12.20390 -12.13555 -11.99864 -11.78682 -11.46638 -11.23709 -11.12519 -11.04859 -10.83750 -10.62655 -10.56847 -10.47757 -10.20940 -10.10401 -9.68595 -9.14689 -8.47191 -8.08041 -7.23511 -6.02140 -4.04069 3.34209 3.37815 3.41186 3.85667 4.43605 4.78904 4.84722 4.93773 5.08165 5.17379 5.24012 5.31925 5.33550 5.43811 5.46588 5.54874 5.63757 5.70855 5.74134 5.76663 5.89505 5.94159 6.00298 6.07427 6.12102 6.19890 6.21365 6.25490 6.43000 6.49074 6.69375 6.72386 7.22393 7.26182 7.31041 7.46033 7.80531 8.15258 8.43117 8.65287 9.05449 9.60825 11.08886 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.053529 B = 0.004392 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.952006 B = 6372.984272 C = 6482.164272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 C -0.150 4.150 4 N -0.545 5.545 5 C 0.059 3.941 6 C -0.144 4.144 7 C -0.142 4.142 8 C 0.084 3.916 9 H 0.063 0.937 10 N -0.687 5.687 11 C 0.195 3.805 12 C -0.514 4.514 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.108 4.108 21 C 0.065 3.935 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.327 0.673 36 H -0.015 1.015 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.032 0.968 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.014 9.456 -2.533 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 C -0.208 4.208 4 N -0.271 5.271 5 C -0.068 4.068 6 C -0.184 4.184 7 C -0.181 4.181 8 C -0.026 4.026 9 H 0.081 0.919 10 N -0.316 5.316 11 C 0.068 3.932 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.146 4.146 21 C -0.062 4.062 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.144 0.856 36 H 0.003 0.997 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.050 0.950 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.703 10.128 -2.208 18.816 hybrid contribution 0.730 -1.710 -0.589 1.950 sum -14.973 8.418 -2.797 17.404 Atomic orbital electron populations 1.21869 0.94679 1.01502 1.01968 1.21549 0.95403 0.94684 0.91476 1.21963 1.01394 0.95500 1.01906 1.62017 1.17215 1.10418 1.37463 1.21913 0.97650 0.86509 1.00764 1.21830 0.98018 0.99821 0.98734 1.21332 0.97668 1.00089 0.98994 1.20510 0.92212 0.94138 0.95760 0.91860 1.60847 1.13448 1.38822 1.18450 1.19562 0.88659 0.91732 0.93250 1.21175 1.09070 1.31574 0.93492 0.92038 1.24992 0.97938 0.96434 0.95197 1.69956 1.30381 1.41450 1.12067 0.86546 0.80605 0.79337 0.80823 1.20277 1.21361 1.20130 1.21462 0.99487 0.96208 0.97469 1.21814 0.86353 0.99757 0.98277 0.91820 0.92612 0.92826 0.94473 0.91854 0.92286 0.92574 0.91589 0.90857 0.92100 0.91886 0.91909 0.92221 0.85625 0.99680 0.95656 0.92897 0.91535 0.90247 0.94989 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.05 37.15 0.34 -0.95 16 2 C 0.08 0.82 2.64 -67.72 -0.18 0.64 16 3 C -0.15 -1.44 8.45 37.16 0.31 -1.12 16 4 N -0.55 -6.63 4.57 -227.87 -1.04 -7.67 16 5 C 0.06 0.71 5.00 -4.49 -0.02 0.69 16 6 C -0.14 -1.92 5.55 -27.33 -0.15 -2.07 16 7 C -0.14 -2.27 4.51 -29.42 -0.13 -2.40 16 8 C 0.08 1.50 2.04 -70.39 -0.14 1.35 16 9 H 0.06 1.24 7.13 -51.93 -0.37 0.87 16 10 N -0.69 -14.83 6.19 -110.87 -0.69 -15.52 16 11 C 0.19 5.17 5.20 -4.97 -0.03 5.14 16 12 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 13 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 16 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.11 -1.63 5.23 -27.29 -0.14 -1.77 16 21 C 0.07 0.86 3.76 -4.46 -0.02 0.85 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.47 6.46 -51.93 -0.34 0.14 16 25 H 0.04 0.43 7.65 -51.93 -0.40 0.03 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.60 6.48 -51.93 -0.34 0.26 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.71 5.90 -51.93 -0.31 0.40 16 30 H 0.07 0.92 6.58 -51.93 -0.34 0.58 16 31 H 0.06 0.86 6.61 -51.93 -0.34 0.52 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.15 7.08 -51.93 -0.37 0.79 16 34 H 0.06 0.91 7.43 -51.93 -0.39 0.52 16 35 H 0.33 6.82 8.39 -39.29 -0.33 6.49 16 36 H -0.01 -0.41 7.14 -51.93 -0.37 -0.78 16 37 H 0.03 0.73 8.04 -51.93 -0.42 0.31 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.07 0.98 7.07 -51.93 -0.37 0.62 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.03 0.45 6.38 -51.93 -0.33 0.12 16 42 H 0.07 0.88 6.92 -51.93 -0.36 0.52 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -29.47 311.34 -9.34 -38.82 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.44 Total: 2.46 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.58 Total: -13.24 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.99 Total: -49.62 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.47 -9.34 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083421815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.525 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds