Wall clock time and date at job start Mon Mar 30 2020 03:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 N 1.46900 * 109.47612 * 120.00436 * 2 1 3 5 5 C 1.48003 * 110.99790 * 66.24003 * 4 2 1 6 6 C 1.50444 * 112.82508 * 84.84299 * 5 4 2 7 7 C 1.54301 * 108.50106 * 93.72699 * 6 5 4 8 8 C 1.45884 * 112.18955 * 281.46462 * 7 6 5 9 9 H 1.08997 * 108.93883 * 300.51644 * 8 7 6 10 10 N 1.46897 * 108.94360 * 181.81521 * 8 7 6 11 11 C 1.46904 * 110.99641 * 83.70615 * 10 8 7 12 12 C 1.50698 * 109.46630 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00573 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99952 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99847 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00010 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47242 * 60.00006 * 16 14 12 18 18 H 1.48507 * 109.46868 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47138 * 299.99581 * 16 14 12 20 20 C 1.54313 * 112.11365 * 61.16233 * 8 7 6 21 21 C 1.47999 * 111.00383 * 194.96324 * 4 2 1 22 22 H 1.09000 * 109.47392 * 294.00042 * 1 2 3 23 23 H 1.08998 * 109.47655 * 54.00092 * 1 2 3 24 24 H 1.09004 * 109.47152 * 174.00639 * 1 2 3 25 25 H 1.09002 * 109.47317 * 240.00353 * 2 1 3 26 26 H 1.09005 * 109.46823 * 60.00495 * 3 2 1 27 27 H 1.09002 * 109.47423 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47538 * 300.00214 * 3 2 1 29 29 H 1.09005 * 108.81331 * 323.97796 * 5 4 2 30 30 H 1.09006 * 108.81188 * 205.70756 * 5 4 2 31 31 H 1.08996 * 109.62913 * 334.02167 * 6 5 4 32 32 H 1.09005 * 109.79276 * 213.52807 * 6 5 4 33 33 H 1.08997 * 108.94475 * 160.76725 * 7 6 5 34 34 H 1.09001 * 108.86722 * 42.10598 * 7 6 5 35 35 H 1.00902 * 110.99643 * 319.75621 * 10 8 7 36 36 H 1.08996 * 109.46853 * 300.00065 * 11 10 8 37 37 H 1.08991 * 109.47147 * 60.00373 * 11 10 8 38 38 H 0.97001 * 120.00258 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.63251 * 41.12345 * 20 8 7 40 40 H 1.08998 * 109.63241 * 161.72442 * 20 8 7 41 41 H 1.09001 * 108.80946 * 312.20782 * 21 4 2 42 42 H 1.08998 * 108.81049 * 70.58741 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.6717 -2.1306 1.1607 6 6 2.6703 -2.9523 0.3920 7 6 3.7084 -3.5159 1.3848 8 6 4.7027 -2.5193 1.7673 9 1 5.2225 -2.1766 0.8727 10 7 5.6760 -3.1408 2.6752 11 6 6.7191 -3.8505 1.9226 12 6 7.6966 -4.4741 2.8852 13 1 7.5568 -4.3555 3.9496 14 6 8.7695 -5.1962 2.4072 15 7 8.9395 -5.3412 1.1112 16 14 9.9808 -5.9698 3.6005 17 1 9.2655 -6.9295 4.4793 18 1 11.0353 -6.6873 2.8397 19 1 10.6043 -4.9082 4.4307 20 6 4.0652 -1.3037 2.4726 21 6 3.4550 -0.4112 1.4254 22 1 -0.3634 0.4180 0.9388 23 1 -0.3634 0.6040 -0.8314 24 1 -0.3634 -1.0221 -0.1073 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 0.6921 -2.2428 0.6959 30 1 1.6188 -2.5070 2.1823 31 1 3.1714 -2.3244 -0.3447 32 1 2.1620 -3.7741 -0.1123 33 1 4.2160 -4.3628 0.9232 34 1 3.1897 -3.8596 2.2798 35 1 5.2180 -3.7583 3.3286 36 1 6.2611 -4.6303 1.3142 37 1 7.2436 -3.1467 1.2766 38 1 9.6945 -5.8489 0.7748 39 1 3.2922 -1.6439 3.1617 40 1 4.8315 -0.7543 3.0194 41 1 3.9924 -0.5502 0.4874 42 1 3.5642 0.6261 1.7420 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083421815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:45 Heat of formation + Delta-G solvation = -26.367870 kcal Electronic energy + Delta-G solvation = -18071.033948 eV Core-core repulsion = 15470.502388 eV Total energy + Delta-G solvation = -2600.531560 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82199 -37.99976 -35.45633 -34.06696 -33.05537 -31.38368 -28.64922 -28.09176 -26.38615 -25.07822 -23.35133 -22.46835 -21.43796 -19.93862 -18.62210 -17.50898 -16.89201 -16.63262 -16.07525 -15.88163 -15.43407 -14.79769 -14.53112 -14.26571 -14.07131 -13.84833 -13.58123 -13.34964 -13.16539 -12.99454 -12.75927 -12.69975 -12.66657 -12.31516 -12.20101 -11.95844 -11.89709 -11.80695 -11.66104 -11.46641 -11.32000 -11.03759 -10.67350 -9.09878 -9.06736 -8.24310 -6.36199 1.39739 1.43723 1.51739 2.38640 2.89608 3.08663 3.46320 3.73922 3.86034 3.94995 4.10250 4.16297 4.28214 4.34448 4.41961 4.51288 4.61596 4.69363 4.76947 4.83896 4.85280 4.92962 4.94102 4.99351 5.04652 5.07028 5.10863 5.19304 5.23560 5.28162 5.32502 5.36680 5.45399 5.50211 5.61216 6.00882 6.24462 6.29038 6.44580 6.72122 6.88638 7.35123 8.87102 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.053529 B = 0.004392 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.952006 B = 6372.984272 C = 6482.164272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.072 3.928 3 C -0.148 4.148 4 N -0.545 5.545 5 C 0.061 3.939 6 C -0.133 4.133 7 C -0.137 4.137 8 C 0.087 3.913 9 H 0.038 0.962 10 N -0.685 5.685 11 C 0.212 3.788 12 C -0.538 4.538 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.936 5.936 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.094 4.094 21 C 0.072 3.928 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.334 0.666 36 H -0.040 1.040 37 H -0.008 1.008 38 H 0.265 0.735 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.018 0.982 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.288 9.887 -1.576 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.036 4.036 3 C -0.205 4.205 4 N -0.271 5.271 5 C -0.067 4.067 6 C -0.173 4.173 7 C -0.176 4.176 8 C -0.022 4.022 9 H 0.056 0.944 10 N -0.315 5.315 11 C 0.084 3.916 12 C -0.576 4.576 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.133 4.133 21 C -0.056 4.056 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.151 0.849 36 H -0.023 1.023 37 H 0.010 0.990 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.036 0.964 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.009 10.576 -1.247 20.068 hybrid contribution 1.093 -1.809 -0.940 2.313 sum -15.915 8.767 -2.188 18.302 Atomic orbital electron populations 1.21828 0.93062 1.02007 1.02567 1.21681 0.96641 0.94919 0.90318 1.21946 1.00777 0.95014 1.02791 1.62075 1.15984 1.10584 1.38442 1.21922 0.97979 0.86140 1.00622 1.21756 0.97432 1.00270 0.97880 1.21225 0.97806 0.98450 1.00083 1.20593 0.91754 0.95367 0.94534 0.94388 1.60749 1.14054 1.37897 1.18790 1.19163 0.89484 0.90305 0.92602 1.21548 1.09971 1.32196 0.93917 0.91663 1.25988 0.99916 0.96731 0.97100 1.70095 1.31186 1.42078 1.14213 0.85358 0.77865 0.78547 0.78365 1.18982 1.20751 1.19238 1.21315 0.99303 0.94861 0.97782 1.21694 0.87094 0.99868 0.96919 0.91894 0.91142 0.92568 0.95348 0.91622 0.93253 0.91060 0.89542 0.90899 0.93199 0.90461 0.95041 0.90973 0.84908 1.02255 0.98994 0.92614 0.90531 0.91065 0.96355 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.05 71.98 0.65 -1.44 16 2 C 0.07 1.40 2.64 44.91 0.12 1.52 16 3 C -0.15 -2.56 8.45 71.98 0.61 -1.95 16 4 N -0.54 -12.26 4.57 -874.86 -4.00 -16.26 16 5 C 0.06 1.33 5.00 85.26 0.43 1.76 16 6 C -0.13 -3.45 5.55 30.21 0.17 -3.29 16 7 C -0.14 -4.44 4.51 28.85 0.13 -4.31 16 8 C 0.09 3.19 2.04 43.18 0.09 3.28 16 9 H 0.04 1.57 7.13 -2.39 -0.02 1.55 16 10 N -0.69 -30.43 6.19 -504.69 -3.12 -33.56 16 11 C 0.21 11.79 5.20 85.56 0.45 12.24 16 12 C -0.54 -31.50 9.32 25.60 0.24 -31.26 16 13 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 14 C 0.00 0.04 5.46 84.66 0.46 0.51 16 15 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 16 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 C -0.09 -2.79 5.23 30.24 0.16 -2.63 16 21 C 0.07 1.84 3.76 85.29 0.32 2.16 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 0.83 6.46 -2.38 -0.02 0.81 16 25 H 0.03 0.61 7.65 -2.39 -0.02 0.59 16 26 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.05 0.94 6.48 -2.39 -0.02 0.92 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.60 5.90 -2.38 -0.01 1.58 16 30 H 0.07 1.65 6.58 -2.38 -0.02 1.63 16 31 H 0.05 1.41 6.61 -2.39 -0.02 1.39 16 32 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.03 1.20 7.08 -2.39 -0.02 1.19 16 34 H 0.07 2.16 7.43 -2.39 -0.02 2.14 16 35 H 0.33 14.07 8.39 -89.69 -0.75 13.31 16 36 H -0.04 -2.39 7.14 -2.39 -0.02 -2.41 16 37 H -0.01 -0.49 8.04 -2.39 -0.02 -0.51 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.08 2.14 7.07 -2.39 -0.02 2.12 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.02 0.52 6.38 -2.39 -0.02 0.51 16 42 H 0.08 1.96 6.92 -2.39 -0.02 1.94 16 Total: -1.00 -64.17 311.34 -0.77 -64.94 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.23 Total: 18.82 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 3.81 Total: -23.42 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -6.84 Total: -107.28 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.17 -0.77 -64.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083421815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.572 kcal (2) G-P(sol) polarization free energy of solvation -64.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds