Wall clock time and date at job start Mon Mar 30 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47401 * 2 1 4 4 N 1.46909 * 109.47031 * 119.99267 * 2 1 3 5 5 C 1.47634 * 110.99686 * 77.43390 * 4 2 1 6 6 C 1.50809 * 108.05429 * 150.34888 * 5 4 2 7 7 C 1.53820 * 111.62447 * 95.05857 * 6 5 4 8 8 C 1.54169 * 111.96818 * 319.04206 * 7 6 5 9 9 H 1.08997 * 108.85578 * 79.29305 * 8 7 6 10 10 N 1.46897 * 108.77474 * 197.73864 * 8 7 6 11 11 C 1.46897 * 111.00016 * 278.03798 * 10 8 7 12 12 C 1.50702 * 109.47196 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99663 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99962 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00258 * 0.02562 * 14 12 11 16 16 Si 1.86811 * 119.99832 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46727 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47051 * 119.99829 * 16 14 12 19 19 H 1.48502 * 109.46889 * 239.99947 * 16 14 12 20 20 C 1.50760 * 112.61149 * 318.49023 * 8 7 6 21 21 C 1.39779 * 111.00057 * 308.54843 * 4 2 1 22 22 H 1.08996 * 109.46616 * 66.12127 * 1 2 3 23 23 H 1.09003 * 109.47010 * 306.13002 * 1 2 3 24 24 H 1.08996 * 109.47294 * 186.12160 * 1 2 3 25 25 H 1.08993 * 109.47420 * 239.99827 * 2 1 3 26 26 H 1.09000 * 109.46745 * 59.99265 * 3 2 1 27 27 H 1.08990 * 109.47110 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46554 * 299.99737 * 3 2 1 29 29 H 1.09000 * 109.74598 * 269.99203 * 5 4 2 30 30 H 1.09003 * 109.74243 * 30.70561 * 5 4 2 31 31 H 1.09004 * 109.05057 * 334.50501 * 6 5 4 32 32 H 1.09002 * 108.99356 * 215.57636 * 6 5 4 33 33 H 1.09001 * 108.98062 * 198.40744 * 7 6 5 34 34 H 1.08999 * 108.91633 * 79.63882 * 7 6 5 35 35 H 1.00897 * 110.99922 * 41.99080 * 10 8 7 36 36 H 1.09002 * 109.47184 * 299.99602 * 11 10 8 37 37 H 1.08992 * 109.47264 * 59.99934 * 11 10 8 38 38 H 0.97001 * 120.00234 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.54306 * 333.15332 * 20 8 7 40 40 H 1.08997 * 109.62017 * 212.92498 * 20 8 7 41 41 H 1.09000 * 109.01341 * 309.71200 * 21 4 2 42 42 H 1.09000 * 109.02345 * 68.60814 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 1.9133 -2.1568 1.0456 6 6 3.0117 -2.7934 1.8596 7 6 2.5171 -3.2024 3.2575 8 6 1.5900 -2.1370 3.8758 9 1 0.5953 -2.2414 3.4427 10 7 1.5034 -2.3685 5.3238 11 6 0.5226 -3.4180 5.6314 12 6 0.4611 -3.6267 7.1226 13 1 1.0883 -3.0389 7.7764 14 6 -0.3950 -4.5689 7.6521 15 7 -1.1576 -5.2857 6.8558 16 14 -0.4707 -4.8281 9.5006 17 1 0.4809 -3.9046 10.1692 18 1 -1.8483 -4.5546 9.9828 19 1 -0.1042 -6.2315 9.8189 20 6 2.0808 -0.7318 3.6357 21 6 1.4200 -0.1801 2.3536 22 1 -0.3632 0.4160 -0.9397 23 1 -0.3633 0.6059 0.8300 24 1 -0.3634 -1.0218 0.1096 25 1 1.8934 -0.5138 -0.8899 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 0.9428 -2.4956 1.4080 30 1 2.0295 -2.4261 -0.0042 31 1 3.8324 -2.0840 1.9661 32 1 3.3730 -3.6790 1.3368 33 1 3.3781 -3.3451 3.9105 34 1 1.9725 -4.1433 3.1784 35 1 2.4082 -2.5953 5.7085 36 1 -0.4591 -3.1160 5.2664 37 1 0.8206 -4.3473 5.1460 38 1 -1.7596 -5.9488 7.2283 39 1 3.1638 -0.7398 3.5133 40 1 1.8142 -0.1011 4.4837 41 1 1.5086 0.9063 2.3475 42 1 0.3640 -0.4501 2.3550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083421817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:49 Heat of formation + Delta-G solvation = -6.435803 kcal Electronic energy + Delta-G solvation = -18162.419291 eV Core-core repulsion = 15562.752050 eV Total energy + Delta-G solvation = -2599.667241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.82694 -36.59274 -33.77305 -32.37343 -31.59992 -29.95182 -27.31743 -26.44453 -25.25171 -23.96311 -21.68348 -21.46239 -19.46924 -19.10301 -16.43516 -16.20026 -15.33730 -14.86238 -14.82121 -14.36306 -14.11078 -13.78069 -13.34690 -13.08964 -12.76818 -12.63353 -12.18210 -12.09531 -11.75136 -11.59112 -11.44132 -11.15185 -11.12366 -10.92912 -10.77611 -10.64030 -10.50180 -10.39378 -10.23677 -9.94289 -9.67207 -9.09982 -8.46741 -8.05310 -7.20007 -6.01158 -4.02780 3.31998 3.39113 3.44532 3.96437 4.44940 4.79307 4.93182 5.01852 5.18455 5.20410 5.26655 5.34805 5.35947 5.43521 5.50207 5.55952 5.63519 5.75701 5.80597 5.83261 5.88402 5.95188 6.05042 6.11770 6.15460 6.22095 6.29800 6.32694 6.45705 6.53499 6.75484 6.82920 7.27364 7.32714 7.48860 7.57781 7.82896 8.17244 8.45723 8.68326 9.07497 9.62232 11.09972 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.042199 B = 0.004684 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.355727 B = 5976.445925 C = 6058.014174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.080 3.920 3 C -0.144 4.144 4 N -0.546 5.546 5 C 0.066 3.934 6 C -0.111 4.111 7 C -0.145 4.145 8 C 0.087 3.913 9 H 0.062 0.938 10 N -0.686 5.686 11 C 0.194 3.806 12 C -0.513 4.513 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.104 4.104 21 C 0.070 3.930 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.327 0.673 36 H 0.024 0.976 37 H -0.014 1.014 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.461 9.393 -14.344 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.028 4.028 3 C -0.201 4.201 4 N -0.270 5.270 5 C -0.061 4.061 6 C -0.150 4.150 7 C -0.184 4.184 8 C -0.024 4.024 9 H 0.080 0.920 10 N -0.315 5.315 11 C 0.067 3.933 12 C -0.551 4.551 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.143 4.143 21 C -0.060 4.060 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.144 0.856 36 H 0.042 0.958 37 H 0.004 0.996 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.317 9.851 -14.139 18.354 hybrid contribution -0.635 -1.375 0.628 1.639 sum 5.683 8.476 -13.511 16.932 Atomic orbital electron populations 1.22476 0.97661 1.02138 1.02121 1.21706 0.92613 0.95411 0.93097 1.21863 1.01720 0.95135 1.01395 1.59140 1.60895 1.04750 1.02264 1.21810 0.98597 0.86357 0.99317 1.21342 0.98632 0.99686 0.95342 1.22695 0.99733 0.99886 0.96085 1.21434 0.97726 0.93180 0.90084 0.91999 1.60965 1.12475 1.49574 1.08530 1.19558 0.90586 0.87027 0.96120 1.21261 1.22567 1.19252 0.92041 0.91963 1.24991 0.95577 0.95805 0.98233 1.69973 1.25306 1.23925 1.34654 0.86449 0.77860 0.77812 0.85335 1.19637 1.21020 1.21123 1.21540 1.00276 0.96462 0.96013 1.21030 0.95904 0.99178 0.89871 0.92467 0.92123 0.92661 0.90461 0.92491 0.91984 0.92669 0.93800 0.91555 0.90876 0.92635 0.92379 0.92469 0.85600 0.95793 0.99610 0.93036 0.91757 0.90304 0.91276 0.95869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 8.26 37.16 0.31 -1.59 16 2 C 0.08 0.82 2.87 -67.70 -0.19 0.63 16 3 C -0.14 -1.31 9.15 37.16 0.34 -0.97 16 4 N -0.55 -6.71 3.86 -231.98 -0.90 -7.60 16 5 C 0.07 0.84 4.77 -4.52 -0.02 0.81 16 6 C -0.11 -1.48 5.41 -27.40 -0.15 -1.62 16 7 C -0.14 -2.35 5.13 -25.69 -0.13 -2.48 16 8 C 0.09 1.56 1.97 -68.23 -0.13 1.42 16 9 H 0.06 1.23 6.22 -51.93 -0.32 0.91 16 10 N -0.69 -14.97 6.06 -108.54 -0.66 -15.63 16 11 C 0.19 5.18 5.22 -4.98 -0.03 5.15 16 12 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 13 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 16 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.10 -1.60 5.33 -27.10 -0.14 -1.75 16 21 C 0.07 0.94 3.99 -6.75 -0.03 0.91 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.66 6.92 -51.93 -0.36 0.30 16 24 H 0.05 0.62 7.59 -51.93 -0.39 0.23 16 25 H 0.08 0.75 7.59 -51.93 -0.39 0.35 16 26 H 0.06 0.54 6.42 -51.93 -0.33 0.21 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.63 6.58 -51.93 -0.34 0.29 16 30 H 0.07 0.73 7.48 -51.93 -0.39 0.35 16 31 H 0.07 0.97 7.26 -51.93 -0.38 0.60 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.94 7.73 -51.93 -0.40 0.54 16 34 H 0.06 1.03 7.80 -51.93 -0.40 0.62 16 35 H 0.33 6.89 8.23 -39.29 -0.32 6.57 16 36 H 0.02 0.70 8.04 -51.93 -0.42 0.28 16 37 H -0.01 -0.39 7.58 -51.93 -0.39 -0.79 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.06 0.95 7.11 -51.93 -0.37 0.58 16 40 H 0.08 1.29 7.96 -51.93 -0.41 0.87 16 41 H 0.07 0.86 6.02 -51.93 -0.31 0.55 16 42 H 0.02 0.35 6.13 -51.93 -0.32 0.03 16 LS Contribution 312.31 15.07 4.71 4.71 Total: -1.00 -29.65 312.31 -9.23 -38.88 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.50 Total: 2.31 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -0.60 Total: -13.10 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.82 Total: -49.75 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.65 -9.23 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083421817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.445 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds