Wall clock time and date at job start Mon Mar 30 2020 03:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47401 * 2 1 4 4 N 1.46909 * 109.47031 * 119.99267 * 2 1 3 5 5 C 1.47634 * 110.99686 * 77.43390 * 4 2 1 6 6 C 1.50809 * 108.05429 * 150.34888 * 5 4 2 7 7 C 1.53820 * 111.62447 * 95.05857 * 6 5 4 8 8 C 1.54169 * 111.96818 * 319.04206 * 7 6 5 9 9 H 1.08997 * 108.85578 * 79.29305 * 8 7 6 10 10 N 1.46897 * 108.77474 * 197.73864 * 8 7 6 11 11 C 1.46897 * 111.00016 * 278.03798 * 10 8 7 12 12 C 1.50702 * 109.47196 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99663 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99962 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00258 * 0.02562 * 14 12 11 16 16 Si 1.86811 * 119.99832 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46727 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47051 * 119.99829 * 16 14 12 19 19 H 1.48502 * 109.46889 * 239.99947 * 16 14 12 20 20 C 1.50760 * 112.61149 * 318.49023 * 8 7 6 21 21 C 1.39779 * 111.00057 * 308.54843 * 4 2 1 22 22 H 1.08996 * 109.46616 * 66.12127 * 1 2 3 23 23 H 1.09003 * 109.47010 * 306.13002 * 1 2 3 24 24 H 1.08996 * 109.47294 * 186.12160 * 1 2 3 25 25 H 1.08993 * 109.47420 * 239.99827 * 2 1 3 26 26 H 1.09000 * 109.46745 * 59.99265 * 3 2 1 27 27 H 1.08990 * 109.47110 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46554 * 299.99737 * 3 2 1 29 29 H 1.09000 * 109.74598 * 269.99203 * 5 4 2 30 30 H 1.09003 * 109.74243 * 30.70561 * 5 4 2 31 31 H 1.09004 * 109.05057 * 334.50501 * 6 5 4 32 32 H 1.09002 * 108.99356 * 215.57636 * 6 5 4 33 33 H 1.09001 * 108.98062 * 198.40744 * 7 6 5 34 34 H 1.08999 * 108.91633 * 79.63882 * 7 6 5 35 35 H 1.00897 * 110.99922 * 41.99080 * 10 8 7 36 36 H 1.09002 * 109.47184 * 299.99602 * 11 10 8 37 37 H 1.08992 * 109.47264 * 59.99934 * 11 10 8 38 38 H 0.97001 * 120.00234 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.54306 * 333.15332 * 20 8 7 40 40 H 1.08997 * 109.62017 * 212.92498 * 20 8 7 41 41 H 1.09000 * 109.01341 * 309.71200 * 21 4 2 42 42 H 1.09000 * 109.02345 * 68.60814 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 1.9133 -2.1568 1.0456 6 6 3.0117 -2.7934 1.8596 7 6 2.5171 -3.2024 3.2575 8 6 1.5900 -2.1370 3.8758 9 1 0.5953 -2.2414 3.4427 10 7 1.5034 -2.3685 5.3238 11 6 0.5226 -3.4180 5.6314 12 6 0.4611 -3.6267 7.1226 13 1 1.0883 -3.0389 7.7764 14 6 -0.3950 -4.5689 7.6521 15 7 -1.1576 -5.2857 6.8558 16 14 -0.4707 -4.8281 9.5006 17 1 0.4809 -3.9046 10.1692 18 1 -1.8483 -4.5546 9.9828 19 1 -0.1042 -6.2315 9.8189 20 6 2.0808 -0.7318 3.6357 21 6 1.4200 -0.1801 2.3536 22 1 -0.3632 0.4160 -0.9397 23 1 -0.3633 0.6059 0.8300 24 1 -0.3634 -1.0218 0.1096 25 1 1.8934 -0.5138 -0.8899 26 1 1.6767 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 0.9428 -2.4956 1.4080 30 1 2.0295 -2.4261 -0.0042 31 1 3.8324 -2.0840 1.9661 32 1 3.3730 -3.6790 1.3368 33 1 3.3781 -3.3451 3.9105 34 1 1.9725 -4.1433 3.1784 35 1 2.4082 -2.5953 5.7085 36 1 -0.4591 -3.1160 5.2664 37 1 0.8206 -4.3473 5.1460 38 1 -1.7596 -5.9488 7.2283 39 1 3.1638 -0.7398 3.5133 40 1 1.8142 -0.1011 4.4837 41 1 1.5086 0.9063 2.3475 42 1 0.3640 -0.4501 2.3550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083421817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:48 Heat of formation + Delta-G solvation = -26.124725 kcal Electronic energy + Delta-G solvation = -18163.273067 eV Core-core repulsion = 15562.752050 eV Total energy + Delta-G solvation = -2600.521017 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94111 -38.02178 -35.46617 -34.12992 -32.78798 -31.39143 -28.39787 -28.05373 -26.44881 -25.48592 -23.50111 -22.76028 -20.55135 -20.41742 -18.53906 -17.29132 -16.79432 -16.38775 -16.06209 -15.91868 -15.42189 -14.97943 -14.74274 -14.47639 -14.13007 -13.99553 -13.55009 -13.37568 -13.12165 -12.92233 -12.81398 -12.62043 -12.52882 -12.38589 -12.10849 -12.02887 -11.91207 -11.65673 -11.49065 -11.44182 -11.23801 -11.04931 -10.68923 -9.09381 -9.05915 -8.24505 -6.36278 1.39429 1.40284 1.54559 2.38527 2.98638 3.08545 3.57001 3.79939 3.89175 3.99963 4.15515 4.18873 4.23083 4.32332 4.43578 4.58857 4.66477 4.70766 4.72700 4.80234 4.84131 4.88919 4.93572 5.02710 5.06482 5.11412 5.17094 5.20035 5.24181 5.27857 5.31966 5.41324 5.48377 5.53927 5.63563 6.01626 6.30492 6.46023 6.51911 6.73810 6.89688 7.35230 8.87362 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.042199 B = 0.004684 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.355727 B = 5976.445925 C = 6058.014174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 C -0.139 4.139 4 N -0.546 5.546 5 C 0.066 3.934 6 C -0.101 4.101 7 C -0.139 4.139 8 C 0.090 3.910 9 H 0.035 0.965 10 N -0.686 5.686 11 C 0.213 3.787 12 C -0.536 4.536 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.975 3.025 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.276 1.276 20 C -0.096 4.096 21 C 0.080 3.920 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.039 0.961 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.019 0.981 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.334 0.666 36 H -0.011 1.011 37 H -0.040 1.040 38 H 0.265 0.735 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 10.406 -14.724 19.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 C -0.196 4.196 4 N -0.270 5.270 5 C -0.061 4.061 6 C -0.140 4.140 7 C -0.178 4.178 8 C -0.020 4.020 9 H 0.054 0.946 10 N -0.315 5.315 11 C 0.085 3.915 12 C -0.574 4.574 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.202 1.202 20 C -0.134 4.134 21 C -0.050 4.050 22 H 0.094 0.906 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.151 0.849 36 H 0.008 0.992 37 H -0.022 1.022 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 7.624 10.883 -14.541 19.698 hybrid contribution -1.056 -1.683 0.677 2.099 sum 6.568 9.200 -13.865 17.889 Atomic orbital electron populations 1.22443 0.97848 1.01087 1.02693 1.21840 0.92443 0.96234 0.92458 1.21830 1.01735 0.94088 1.01992 1.59182 1.60613 1.04521 1.02635 1.21818 0.97054 0.86759 1.00445 1.21276 0.98783 1.00671 0.93231 1.22595 0.98893 0.97964 0.98379 1.21502 0.97173 0.95636 0.87667 0.94642 1.60876 1.11921 1.47302 1.11413 1.19150 0.90134 0.86995 0.95249 1.21610 1.23093 1.19790 0.92935 0.91700 1.25988 0.94814 0.95187 1.03783 1.70107 1.25888 1.24452 1.37165 0.85255 0.78184 0.78123 0.78550 1.18531 1.20352 1.20186 1.21431 1.01017 0.94085 0.96864 1.20893 0.94539 1.00005 0.89596 0.90628 0.93123 0.94231 0.89107 0.93078 0.91861 0.90934 0.96300 0.89213 0.89990 0.90919 0.92161 0.95060 0.84896 0.99240 1.02215 0.92632 0.90447 0.91231 0.89611 0.97829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 8.26 71.98 0.59 -2.93 16 2 C 0.08 1.43 2.87 44.92 0.13 1.55 16 3 C -0.14 -2.14 9.15 71.98 0.66 -1.49 16 4 N -0.55 -12.52 3.86 -887.85 -3.43 -15.95 16 5 C 0.07 1.61 4.77 85.45 0.41 2.02 16 6 C -0.10 -2.54 5.41 30.16 0.16 -2.38 16 7 C -0.14 -4.60 5.13 31.27 0.16 -4.44 16 8 C 0.09 3.36 1.97 44.58 0.09 3.45 16 9 H 0.04 1.50 6.22 -2.39 -0.01 1.49 16 10 N -0.69 -30.90 6.06 -497.32 -3.01 -33.91 16 11 C 0.21 11.92 5.22 85.56 0.45 12.37 16 12 C -0.54 -31.59 9.32 25.60 0.24 -31.35 16 13 H 0.06 3.71 7.81 -2.91 -0.02 3.68 16 14 C 0.00 0.01 5.46 84.65 0.46 0.48 16 15 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 16 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 C -0.10 -2.90 5.33 30.35 0.16 -2.74 16 21 C 0.08 2.09 3.99 88.07 0.35 2.45 16 22 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 1.07 6.92 -2.39 -0.02 1.05 16 24 H 0.04 0.88 7.59 -2.39 -0.02 0.86 16 25 H 0.09 1.47 7.59 -2.39 -0.02 1.45 16 26 H 0.05 0.85 6.42 -2.39 -0.02 0.83 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.02 0.56 6.58 -2.39 -0.02 0.54 16 30 H 0.09 1.78 7.48 -2.39 -0.02 1.77 16 31 H 0.08 1.97 7.26 -2.38 -0.02 1.95 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.95 7.73 -2.39 -0.02 1.93 16 34 H 0.03 1.17 7.80 -2.39 -0.02 1.15 16 35 H 0.33 14.28 8.23 -89.70 -0.74 13.54 16 36 H -0.01 -0.65 8.04 -2.39 -0.02 -0.67 16 37 H -0.04 -2.39 7.58 -2.39 -0.02 -2.41 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.08 2.16 7.11 -2.39 -0.02 2.15 16 40 H 0.07 2.25 7.96 -2.39 -0.02 2.23 16 41 H 0.09 2.00 6.02 -2.39 -0.01 1.98 16 42 H 0.00 0.11 6.13 -2.39 -0.01 0.10 16 Total: -1.00 -64.99 312.31 -0.03 -65.02 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.24 Total: 18.37 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 3.86 Total: -23.00 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -6.16 Total: -107.58 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.99 -0.03 -65.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083421817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.899 kcal (2) G-P(sol) polarization free energy of solvation -64.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds