Wall clock time and date at job start Mon Mar 30 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.47803 * 110.99922 * 66.05038 * 4 3 2 6 6 C 1.45863 * 112.91809 * 153.86642 * 5 4 3 7 7 C 1.54501 * 111.59397 * 61.32588 * 6 5 4 8 8 C 1.50465 * 108.85228 * 282.80634 * 7 6 5 9 9 H 1.08996 * 108.77062 * 331.23888 * 8 7 6 10 10 N 1.46900 * 108.77139 * 213.06661 * 8 7 6 11 11 C 1.46900 * 110.99882 * 85.00395 * 10 8 7 12 12 C 1.50692 * 109.47468 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99617 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00395 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99646 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00183 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47071 * 59.99932 * 16 14 12 18 18 H 1.48495 * 109.47088 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47067 * 300.00412 * 16 14 12 20 20 C 1.54293 * 113.03169 * 92.15369 * 8 7 6 21 21 C 1.44268 * 111.00316 * 304.06554 * 4 3 2 22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 23 23 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 24 24 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 26 26 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 27 27 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 28 28 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 29 29 H 1.08997 * 108.79421 * 274.75014 * 5 4 3 30 30 H 1.09003 * 108.79499 * 32.97820 * 5 4 3 31 31 H 1.09005 * 109.05749 * 181.87203 * 6 5 4 32 32 H 1.08998 * 109.05563 * 300.78086 * 6 5 4 33 33 H 1.08994 * 109.57494 * 42.61652 * 7 6 5 34 34 H 1.08993 * 109.57589 * 162.99868 * 7 6 5 35 35 H 1.00900 * 110.99869 * 208.95562 * 10 8 7 36 36 H 1.09007 * 109.47108 * 300.00292 * 11 10 8 37 37 H 1.08999 * 109.47133 * 59.99466 * 11 10 8 38 38 H 0.96995 * 119.99331 * 180.02562 * 15 14 12 39 39 H 1.08996 * 108.92167 * 79.02652 * 20 8 7 40 40 H 1.09002 * 108.92072 * 197.58214 * 20 8 7 41 41 H 1.09007 * 108.97686 * 339.95505 * 21 4 3 42 42 H 1.08998 * 108.97575 * 98.66695 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0381 0.8825 -1.2620 6 6 5.3675 1.3836 -1.5923 7 6 6.4020 1.0090 -0.5076 8 6 6.2237 1.9263 0.6717 9 1 5.8297 2.8792 0.3185 10 7 7.5351 2.1608 1.2907 11 6 8.2463 3.2562 0.6182 12 6 9.5843 3.4667 1.2787 13 1 9.8769 2.8489 2.1148 14 6 10.4350 4.4481 0.8156 15 7 10.0784 5.2007 -0.2022 16 14 12.0933 4.7095 1.6349 17 1 12.8956 3.4637 1.5370 18 1 12.8122 5.8167 0.9549 19 1 11.8899 5.0562 3.0645 20 6 5.2655 1.3579 1.7391 21 6 4.0265 0.6879 1.1148 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 4.0842 -0.2028 -1.1723 30 1 3.3554 1.1370 -2.0728 31 1 5.6815 0.9582 -2.5456 32 1 5.3260 2.4688 -1.6849 33 1 6.2453 -0.0231 -0.1944 34 1 7.4091 1.1219 -0.9089 35 1 7.4412 2.3435 2.2786 36 1 8.3956 3.0022 -0.4313 37 1 7.6571 4.1704 0.6904 38 1 10.6771 5.8908 -0.5282 39 1 5.8009 0.6217 2.3386 40 1 4.9384 2.1697 2.3888 41 1 3.2498 0.6007 1.8746 42 1 4.2984 -0.3103 0.7717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083421823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:51 Heat of formation + Delta-G solvation = -10.437979 kcal Electronic energy + Delta-G solvation = -17923.643098 eV Core-core repulsion = 15323.802310 eV Total energy + Delta-G solvation = -2599.840788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.52243 -36.33615 -33.94649 -32.54181 -32.18499 -30.44932 -27.15303 -26.01743 -24.58133 -23.65141 -22.10348 -21.23598 -19.87819 -18.91363 -16.47333 -15.92720 -15.72464 -14.94607 -14.73135 -14.33573 -14.22190 -14.07686 -13.36706 -13.07097 -12.89039 -12.54863 -12.19100 -12.10909 -11.76589 -11.65467 -11.43876 -11.29387 -11.00100 -10.82129 -10.73021 -10.64918 -10.50901 -10.31044 -10.08622 -9.97448 -9.62227 -9.05363 -8.40620 -8.18265 -7.14032 -5.96058 -3.97606 3.37634 3.41099 3.44478 3.96004 4.48439 4.72150 4.72770 4.93435 5.01683 5.11485 5.26732 5.36447 5.39368 5.41753 5.45555 5.51282 5.57722 5.65171 5.77881 5.79295 5.80618 5.84746 6.01912 6.05896 6.07443 6.18071 6.33765 6.34277 6.59427 6.69852 6.84389 6.95688 7.18460 7.25615 7.42011 7.55603 7.88190 8.24822 8.54515 8.76009 9.12467 9.66871 11.14997 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.056343 B = 0.004291 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.833529 B = 6524.189084 C = 6695.698219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.164 4.164 3 C 0.056 3.944 4 N -0.527 5.527 5 C 0.062 3.938 6 C -0.121 4.121 7 C -0.099 4.099 8 C 0.097 3.903 9 H 0.039 0.961 10 N -0.693 5.693 11 C 0.196 3.804 12 C -0.513 4.513 13 H 0.060 0.940 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.112 4.112 21 C 0.061 3.939 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.325 0.675 36 H 0.027 0.973 37 H -0.016 1.016 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.195 -9.897 -0.529 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.203 4.203 3 C -0.072 4.072 4 N -0.250 5.250 5 C -0.065 4.065 6 C -0.160 4.160 7 C -0.138 4.138 8 C -0.014 4.014 9 H 0.057 0.943 10 N -0.323 5.323 11 C 0.069 3.931 12 C -0.552 4.552 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.150 4.150 21 C -0.068 4.068 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.045 0.955 37 H 0.002 0.998 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -16.634 -9.717 -0.970 19.288 hybrid contribution 0.148 0.182 0.597 0.641 sum -16.486 -9.535 -0.373 19.048 Atomic orbital electron populations 1.21691 0.95592 1.01476 1.01822 1.22283 0.96576 0.99224 1.02222 1.22388 0.87212 0.94960 1.02683 1.61767 1.06353 1.54127 1.02746 1.21010 0.97162 0.96767 0.91525 1.20623 0.94331 1.02360 0.98652 1.21335 0.99039 0.98521 0.94872 1.21133 0.89027 0.97533 0.93668 0.94271 1.60872 1.16868 1.48109 1.06499 1.19549 0.92482 0.86002 0.95032 1.21196 1.01316 1.16566 1.16133 0.92143 1.24992 0.98543 0.95871 0.95209 1.69963 1.36957 1.21389 1.25487 0.86566 0.83801 0.77628 0.79410 1.20211 1.21395 1.20322 1.22139 0.94875 1.00090 0.97931 1.21872 0.96731 0.95050 0.93168 0.92688 0.92719 0.92987 0.92017 0.91820 0.90871 0.90791 0.94874 0.92134 0.91994 0.91268 0.93029 0.90787 0.85868 0.95465 0.99783 0.92954 0.91589 0.92607 0.92232 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.16 -1.44 5.38 -26.73 -0.14 -1.58 16 3 C 0.06 0.57 5.07 -3.82 -0.02 0.55 16 4 N -0.53 -6.73 4.45 -239.55 -1.07 -7.80 16 5 C 0.06 0.78 4.01 -6.70 -0.03 0.75 16 6 C -0.12 -1.78 5.53 -29.32 -0.16 -1.94 16 7 C -0.10 -1.72 5.19 -27.21 -0.14 -1.86 16 8 C 0.10 1.80 2.15 -68.30 -0.15 1.65 16 9 H 0.04 0.82 6.96 -51.93 -0.36 0.46 16 10 N -0.69 -15.45 6.19 -108.62 -0.67 -16.13 16 11 C 0.20 5.33 5.13 -4.98 -0.03 5.30 16 12 C -0.51 -14.97 9.32 -34.44 -0.32 -15.29 16 13 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 16 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.11 -1.69 5.34 -25.50 -0.14 -1.83 16 21 C 0.06 0.77 4.00 -4.67 -0.02 0.75 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.56 7.17 -51.93 -0.37 0.19 16 26 H 0.06 0.58 6.65 -51.93 -0.35 0.24 16 27 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 28 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.03 0.39 6.90 -51.93 -0.36 0.04 16 30 H 0.06 0.68 7.64 -51.93 -0.40 0.28 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.14 7.59 -51.93 -0.39 0.74 16 33 H 0.05 0.83 7.15 -51.93 -0.37 0.45 16 34 H 0.07 1.48 7.15 -51.93 -0.37 1.11 16 35 H 0.32 6.98 8.27 -39.29 -0.33 6.65 16 36 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 37 H -0.02 -0.46 8.03 -51.93 -0.42 -0.87 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.67 6.81 -51.93 -0.35 0.32 16 42 H 0.04 0.50 6.51 -51.93 -0.34 0.16 16 LS Contribution 316.50 15.07 4.77 4.77 Total: -1.00 -30.34 316.50 -9.83 -40.17 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.70 Total: 1.31 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.87 Total: -12.70 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -1.00 Total: -50.67 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.34 -9.83 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083421823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.728 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds