Wall clock time and date at job start Mon Mar 30 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.47803 * 110.99922 * 66.05038 * 4 3 2 6 6 C 1.45863 * 112.91809 * 153.86642 * 5 4 3 7 7 C 1.54501 * 111.59397 * 61.32588 * 6 5 4 8 8 C 1.50465 * 108.85228 * 282.80634 * 7 6 5 9 9 H 1.08996 * 108.77062 * 331.23888 * 8 7 6 10 10 N 1.46900 * 108.77139 * 213.06661 * 8 7 6 11 11 C 1.46900 * 110.99882 * 85.00395 * 10 8 7 12 12 C 1.50692 * 109.47468 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99617 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00395 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99646 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00183 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47071 * 59.99932 * 16 14 12 18 18 H 1.48495 * 109.47088 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47067 * 300.00412 * 16 14 12 20 20 C 1.54293 * 113.03169 * 92.15369 * 8 7 6 21 21 C 1.44268 * 111.00316 * 304.06554 * 4 3 2 22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 23 23 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 24 24 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 26 26 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 27 27 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 28 28 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 29 29 H 1.08997 * 108.79421 * 274.75014 * 5 4 3 30 30 H 1.09003 * 108.79499 * 32.97820 * 5 4 3 31 31 H 1.09005 * 109.05749 * 181.87203 * 6 5 4 32 32 H 1.08998 * 109.05563 * 300.78086 * 6 5 4 33 33 H 1.08994 * 109.57494 * 42.61652 * 7 6 5 34 34 H 1.08993 * 109.57589 * 162.99868 * 7 6 5 35 35 H 1.00900 * 110.99869 * 208.95562 * 10 8 7 36 36 H 1.09007 * 109.47108 * 300.00292 * 11 10 8 37 37 H 1.08999 * 109.47133 * 59.99466 * 11 10 8 38 38 H 0.96995 * 119.99331 * 180.02562 * 15 14 12 39 39 H 1.08996 * 108.92167 * 79.02652 * 20 8 7 40 40 H 1.09002 * 108.92072 * 197.58214 * 20 8 7 41 41 H 1.09007 * 108.97686 * 339.95505 * 21 4 3 42 42 H 1.08998 * 108.97575 * 98.66695 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0381 0.8825 -1.2620 6 6 5.3675 1.3836 -1.5923 7 6 6.4020 1.0090 -0.5076 8 6 6.2237 1.9263 0.6717 9 1 5.8297 2.8792 0.3185 10 7 7.5351 2.1608 1.2907 11 6 8.2463 3.2562 0.6182 12 6 9.5843 3.4667 1.2787 13 1 9.8769 2.8489 2.1148 14 6 10.4350 4.4481 0.8156 15 7 10.0784 5.2007 -0.2022 16 14 12.0933 4.7095 1.6349 17 1 12.8956 3.4637 1.5370 18 1 12.8122 5.8167 0.9549 19 1 11.8899 5.0562 3.0645 20 6 5.2655 1.3579 1.7391 21 6 4.0265 0.6879 1.1148 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 4.0842 -0.2028 -1.1723 30 1 3.3554 1.1370 -2.0728 31 1 5.6815 0.9582 -2.5456 32 1 5.3260 2.4688 -1.6849 33 1 6.2453 -0.0231 -0.1944 34 1 7.4091 1.1219 -0.9089 35 1 7.4412 2.3435 2.2786 36 1 8.3956 3.0022 -0.4313 37 1 7.6571 4.1704 0.6904 38 1 10.6771 5.8908 -0.5282 39 1 5.8009 0.6217 2.3386 40 1 4.9384 2.1697 2.3888 41 1 3.2498 0.6007 1.8746 42 1 4.2984 -0.3103 0.7717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083421823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:51 Heat of formation + Delta-G solvation = -31.147642 kcal Electronic energy + Delta-G solvation = -17924.541137 eV Core-core repulsion = 15323.802310 eV Total energy + Delta-G solvation = -2600.738827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63007 -37.77502 -35.43802 -34.34768 -33.21656 -31.97757 -28.67854 -27.54733 -25.70734 -25.00139 -23.29741 -22.90073 -21.08265 -20.18207 -18.51499 -17.16265 -16.91881 -16.57765 -15.89600 -15.77328 -15.58709 -15.19317 -14.72102 -14.52806 -14.09655 -13.97696 -13.57960 -13.43636 -13.07163 -12.93815 -12.76378 -12.60650 -12.41900 -12.20172 -12.11116 -12.04169 -11.77730 -11.63313 -11.45108 -11.36561 -11.24518 -11.08890 -10.64720 -9.13762 -9.07107 -8.21794 -6.33798 1.40325 1.44730 1.52754 2.40281 3.01377 3.10694 3.51715 3.89705 3.99665 4.02122 4.09745 4.19809 4.31835 4.35784 4.42540 4.59124 4.60016 4.68828 4.73501 4.83908 4.86593 4.89820 4.97057 5.00407 5.09968 5.15372 5.20301 5.22320 5.25266 5.27793 5.34525 5.43257 5.47244 5.50298 5.65629 6.06256 6.22584 6.32485 6.50940 6.77845 6.93667 7.37372 8.89806 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.056343 B = 0.004291 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.833529 B = 6524.189084 C = 6695.698219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.157 4.157 3 C 0.058 3.942 4 N -0.550 5.550 5 C 0.065 3.935 6 C -0.113 4.113 7 C -0.096 4.096 8 C 0.099 3.901 9 H 0.009 0.991 10 N -0.690 5.690 11 C 0.215 3.785 12 C -0.538 4.538 13 H 0.065 0.935 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.265 1.265 20 C -0.105 4.105 21 C 0.068 3.932 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.330 0.670 36 H -0.003 1.003 37 H -0.049 1.049 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.894 -11.235 0.295 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C -0.070 4.070 4 N -0.273 5.273 5 C -0.062 4.062 6 C -0.152 4.152 7 C -0.134 4.134 8 C -0.011 4.011 9 H 0.027 0.973 10 N -0.320 5.320 11 C 0.087 3.913 12 C -0.576 4.576 13 H 0.083 0.917 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.190 1.190 20 C -0.144 4.144 21 C -0.061 4.061 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.147 0.853 36 H 0.016 0.984 37 H -0.031 1.031 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.362 -11.073 -0.140 20.593 hybrid contribution 0.323 0.621 0.309 0.765 sum -17.039 -10.452 0.169 19.990 Atomic orbital electron populations 1.21671 0.94544 1.02005 1.02150 1.22200 0.97427 0.97868 1.02098 1.22406 0.85463 0.96147 1.02975 1.61670 1.08143 1.54693 1.02799 1.20934 0.95781 0.97352 0.92099 1.20572 0.95271 1.00821 0.98499 1.21272 0.97983 0.99186 0.94977 1.21237 0.87846 0.96823 0.95145 0.97275 1.60809 1.19019 1.45510 1.06673 1.19143 0.92412 0.85933 0.93791 1.21559 1.02270 1.17198 1.16621 0.91722 1.26011 1.02969 0.95224 0.95666 1.70107 1.38664 1.21887 1.26872 0.85347 0.78181 0.77883 0.78639 1.19212 1.20702 1.19011 1.22094 0.95309 1.00247 0.96750 1.21791 0.95879 0.94753 0.93717 0.92400 0.92413 0.92363 0.92131 0.91896 0.90564 0.90629 0.93450 0.90504 0.90489 0.93896 0.91179 0.94361 0.85286 0.98445 1.03124 0.92621 0.90829 0.92865 0.90219 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.16 -2.32 5.38 30.59 0.16 -2.15 16 3 C 0.06 1.05 5.07 86.30 0.44 1.49 16 4 N -0.55 -13.17 4.45 -911.80 -4.06 -17.23 16 5 C 0.07 1.51 4.01 83.94 0.34 1.85 16 6 C -0.11 -3.33 5.53 28.92 0.16 -3.17 16 7 C -0.10 -3.37 5.19 30.28 0.16 -3.21 16 8 C 0.10 3.80 2.15 44.53 0.10 3.89 16 9 H 0.01 0.41 6.96 -2.39 -0.02 0.39 16 10 N -0.69 -31.77 6.19 -497.57 -3.08 -34.84 16 11 C 0.22 12.29 5.13 85.55 0.44 12.73 16 12 C -0.54 -32.10 9.32 25.60 0.24 -31.86 16 13 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 14 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 15 N -0.94 -58.57 13.29 21.45 0.28 -58.28 16 16 Si 0.98 45.50 29.54 68.60 2.03 47.52 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 C -0.11 -3.09 5.34 31.39 0.17 -2.93 16 21 C 0.07 1.57 4.00 87.16 0.35 1.92 16 22 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.92 7.17 -2.39 -0.02 0.91 16 26 H 0.06 0.95 6.65 -2.39 -0.02 0.94 16 27 H 0.08 1.34 7.89 -2.39 -0.02 1.32 16 28 H 0.08 1.35 8.13 -2.39 -0.02 1.34 16 29 H 0.05 0.99 6.90 -2.39 -0.02 0.97 16 30 H 0.08 1.55 7.64 -2.39 -0.02 1.53 16 31 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.04 1.47 7.59 -2.39 -0.02 1.45 16 33 H 0.07 2.17 7.15 -2.39 -0.02 2.16 16 34 H 0.04 1.60 7.15 -2.39 -0.02 1.58 16 35 H 0.33 14.45 8.27 -89.69 -0.74 13.71 16 36 H 0.00 -0.16 7.40 -2.38 -0.02 -0.18 16 37 H -0.05 -3.05 8.03 -2.39 -0.02 -3.07 16 38 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 1.55 6.81 -2.38 -0.02 1.54 16 42 H 0.05 1.05 6.51 -2.39 -0.02 1.03 16 Total: -1.00 -66.90 316.50 -0.88 -67.78 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.23 Total: 17.13 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 3.72 Total: -22.07 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -6.85 Total: -110.36 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -66.90 -0.88 -67.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083421823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.628 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds