Wall clock time and date at job start Mon Mar 30 2020 03:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 N 1.46898 * 109.47308 * 179.97438 * 3 2 1 5 5 C 1.44312 * 111.00066 * 66.04322 * 4 3 2 6 6 C 1.53984 * 108.31148 * 221.34598 * 5 4 3 7 7 C 1.45872 * 112.67264 * 278.59475 * 6 5 4 8 8 C 1.54520 * 111.66898 * 61.49825 * 7 6 5 9 9 H 1.08995 * 109.57408 * 42.71144 * 8 7 6 10 10 N 1.46904 * 109.57258 * 162.95795 * 8 7 6 11 11 C 1.46899 * 111.00029 * 274.75230 * 10 8 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48495 * 109.46891 * 210.00496 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 C 1.50539 * 108.96687 * 282.83068 * 8 7 6 21 21 C 1.47945 * 111.00294 * 193.44939 * 4 3 2 22 22 H 1.09004 * 109.47571 * 299.99952 * 1 2 3 23 23 H 1.08996 * 109.47446 * 60.00439 * 1 2 3 24 24 H 1.09000 * 109.47212 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47403 * 239.99795 * 2 1 3 26 26 H 1.08996 * 109.47446 * 119.99561 * 2 1 3 27 27 H 1.09001 * 109.47663 * 59.99634 * 3 2 1 28 28 H 1.09004 * 109.47208 * 299.99691 * 3 2 1 29 29 H 1.09002 * 109.69148 * 101.64337 * 5 4 3 30 30 H 1.08995 * 109.69199 * 341.05435 * 5 4 3 31 31 H 1.09006 * 108.83838 * 157.76878 * 6 5 4 32 32 H 1.09008 * 108.83966 * 39.42030 * 6 5 4 33 33 H 1.09001 * 109.03773 * 300.93122 * 7 6 5 34 34 H 1.09000 * 109.03689 * 182.06204 * 7 6 5 35 35 H 1.00908 * 110.99583 * 38.70142 * 10 8 7 36 36 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 37 37 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 38 38 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 39 39 H 1.08992 * 108.79455 * 212.58343 * 20 8 7 40 40 H 1.09006 * 108.78481 * 330.79938 * 20 8 7 41 41 H 1.08993 * 108.71374 * 313.18539 * 21 4 3 42 42 H 1.08998 * 108.70420 * 71.32264 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5088 1.4426 0.0006 5 6 4.0266 0.8954 -1.2303 6 6 5.2244 -0.0107 -0.8908 7 6 6.4584 0.7406 -0.6891 8 6 6.3389 1.7268 0.4945 9 1 5.8301 1.2393 1.3261 10 7 7.6798 2.1513 0.9187 11 6 8.2602 1.1916 1.8675 12 6 9.6325 1.6592 2.2787 13 1 10.0336 2.5771 1.8752 14 6 10.3765 0.9144 3.1691 15 7 11.5739 1.3227 3.5283 16 14 9.6830 -0.6738 3.8664 17 1 10.0610 -1.8079 2.9853 18 1 10.2336 -0.8990 5.2269 19 1 8.2030 -0.5770 3.9411 20 6 5.5461 2.9278 0.0525 21 6 4.0389 2.7860 0.3219 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.6765 1.9564 0.8899 28 1 1.6766 1.9564 -0.8900 29 1 4.3518 1.7048 -1.8839 30 1 3.2523 0.3103 -1.7265 31 1 5.3726 -0.7186 -1.7064 32 1 4.9983 -0.5671 0.0188 33 1 6.6865 1.2999 -1.5964 34 1 7.2712 0.0424 -0.4895 35 1 8.2856 2.2843 0.1228 36 1 7.6215 1.1196 2.7479 37 1 8.3370 0.2131 1.3933 38 1 12.0974 0.7985 4.1545 39 1 5.9166 3.8066 0.5801 40 1 5.6970 3.0737 -1.0171 41 1 3.5049 3.5247 -0.2757 42 1 3.8551 2.9912 1.3765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083421829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:54 Heat of formation + Delta-G solvation = -9.467446 kcal Electronic energy + Delta-G solvation = -17954.154515 eV Core-core repulsion = 15354.355812 eV Total energy + Delta-G solvation = -2599.798703 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.38001 -36.46643 -33.96390 -32.70809 -32.35927 -30.74671 -27.42267 -26.29679 -24.82073 -23.54199 -21.28234 -20.95935 -20.28648 -19.46392 -16.79828 -16.18535 -15.78647 -15.13577 -14.75787 -14.42751 -14.06499 -13.87706 -13.52608 -13.21057 -12.95128 -12.74552 -12.38213 -12.28254 -12.01098 -11.83883 -11.53706 -11.31952 -11.05024 -10.98651 -10.69821 -10.54713 -10.52456 -10.36600 -10.20934 -10.05483 -9.68425 -9.22092 -8.55680 -8.15488 -7.37087 -6.01796 -3.99088 3.32115 3.39511 3.43992 3.83833 4.46490 4.72359 4.82751 4.89532 5.02781 5.10667 5.16506 5.19258 5.29773 5.31134 5.32897 5.47611 5.52183 5.57421 5.67903 5.81684 5.82560 5.84011 5.93349 5.98296 6.03202 6.14317 6.22214 6.35955 6.37965 6.50167 6.61482 6.69608 6.91686 7.11605 7.16333 7.30500 7.69060 8.00129 8.44283 8.71627 9.06578 9.60948 11.11659 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032168 B = 0.005093 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.219584 B = 5496.100676 C = 5840.252809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.060 3.940 4 N -0.549 5.549 5 C 0.062 3.938 6 C -0.107 4.107 7 C -0.147 4.147 8 C 0.094 3.906 9 H 0.080 0.920 10 N -0.677 5.677 11 C 0.166 3.834 12 C -0.515 4.515 13 H 0.078 0.922 14 C 0.068 3.932 15 N -0.902 5.902 16 Si 0.877 3.123 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.266 1.266 20 C -0.110 4.110 21 C 0.068 3.932 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.333 0.667 36 H 0.025 0.975 37 H -0.021 1.021 38 H 0.263 0.737 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.028 0.972 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.340 -1.717 -9.753 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.067 4.067 4 N -0.274 5.274 5 C -0.066 4.066 6 C -0.146 4.146 7 C -0.187 4.187 8 C -0.017 4.017 9 H 0.098 0.902 10 N -0.306 5.306 11 C 0.038 3.962 12 C -0.553 4.553 13 H 0.096 0.904 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.148 4.148 21 C -0.060 4.060 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.150 0.850 36 H 0.043 0.957 37 H -0.003 1.003 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.241 -1.615 -8.769 22.118 hybrid contribution -0.219 -1.109 -0.817 1.395 sum -20.460 -2.724 -9.586 22.758 Atomic orbital electron populations 1.21735 0.95865 1.01629 1.01613 1.21587 0.95032 0.96632 1.02820 1.22101 0.87348 0.96927 1.00357 1.60719 1.06448 1.24925 1.35323 1.21842 0.96997 0.97567 0.90192 1.20404 0.94570 0.97954 1.01659 1.21316 0.98018 0.99754 0.99570 1.21268 0.91744 0.92909 0.95792 0.90226 1.60701 1.02309 1.49076 1.18470 1.20001 0.95616 0.89317 0.91297 1.21103 0.98310 1.09701 1.26183 0.90401 1.24908 0.94685 0.97672 0.96106 1.69905 1.10780 1.39165 1.34299 0.86824 0.79960 0.84153 0.78598 1.20401 1.21216 1.19049 1.21421 0.92556 1.00208 1.00653 1.22338 0.95284 0.87499 1.00830 0.92703 0.93045 0.92651 0.91972 0.91048 0.91068 0.95383 0.94119 0.91655 0.92946 0.91313 0.92895 0.92052 0.85022 0.95667 1.00322 0.92721 0.89883 0.93235 0.95418 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.15 0.37 -0.75 16 2 C -0.12 -1.12 5.89 -26.74 -0.16 -1.28 16 3 C 0.06 0.61 4.81 -3.82 -0.02 0.59 16 4 N -0.55 -6.69 4.01 -234.73 -0.94 -7.63 16 5 C 0.06 0.73 5.10 -4.69 -0.02 0.70 16 6 C -0.11 -1.40 5.37 -29.59 -0.16 -1.56 16 7 C -0.15 -2.25 4.69 -29.31 -0.14 -2.39 16 8 C 0.09 1.61 2.15 -68.14 -0.15 1.46 16 9 H 0.08 1.51 7.46 -51.93 -0.39 1.12 16 10 N -0.68 -14.25 6.12 -108.45 -0.66 -14.91 16 11 C 0.17 4.12 4.29 -4.98 -0.02 4.10 16 12 C -0.51 -15.03 9.87 -34.44 -0.34 -15.37 16 13 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 16 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 20 C -0.11 -1.59 4.99 -27.56 -0.14 -1.73 16 21 C 0.07 0.85 5.37 -2.85 -0.02 0.84 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.57 6.39 -51.93 -0.33 0.24 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 28 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 29 H 0.04 0.48 6.79 -51.93 -0.35 0.13 16 30 H 0.07 0.67 5.87 -51.93 -0.30 0.37 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.99 8.08 -51.92 -0.42 0.57 16 33 H 0.05 0.76 7.60 -51.93 -0.39 0.36 16 34 H 0.06 1.05 7.27 -51.93 -0.38 0.67 16 35 H 0.33 6.83 8.48 -39.29 -0.33 6.50 16 36 H 0.03 0.65 7.12 -51.93 -0.37 0.28 16 37 H -0.02 -0.52 6.77 -51.93 -0.35 -0.87 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 40 H 0.05 0.67 6.67 -51.93 -0.35 0.33 16 41 H 0.03 0.31 8.02 -51.93 -0.42 -0.10 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -30.34 316.07 -9.39 -39.73 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.76 Total: 1.51 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.89 Total: -13.48 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.83 Total: -49.95 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.34 -9.39 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083421829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.263 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds