Wall clock time and date at job start Mon Mar 30 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 N 1.46898 * 109.47308 * 179.97438 * 3 2 1 5 5 C 1.44312 * 111.00066 * 66.04322 * 4 3 2 6 6 C 1.53984 * 108.31148 * 221.34598 * 5 4 3 7 7 C 1.45872 * 112.67264 * 278.59475 * 6 5 4 8 8 C 1.54520 * 111.66898 * 61.49825 * 7 6 5 9 9 H 1.08995 * 109.57408 * 42.71144 * 8 7 6 10 10 N 1.46904 * 109.57258 * 162.95795 * 8 7 6 11 11 C 1.46899 * 111.00029 * 274.75230 * 10 8 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48495 * 109.46891 * 210.00496 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 C 1.50539 * 108.96687 * 282.83068 * 8 7 6 21 21 C 1.47945 * 111.00294 * 193.44939 * 4 3 2 22 22 H 1.09004 * 109.47571 * 299.99952 * 1 2 3 23 23 H 1.08996 * 109.47446 * 60.00439 * 1 2 3 24 24 H 1.09000 * 109.47212 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47403 * 239.99795 * 2 1 3 26 26 H 1.08996 * 109.47446 * 119.99561 * 2 1 3 27 27 H 1.09001 * 109.47663 * 59.99634 * 3 2 1 28 28 H 1.09004 * 109.47208 * 299.99691 * 3 2 1 29 29 H 1.09002 * 109.69148 * 101.64337 * 5 4 3 30 30 H 1.08995 * 109.69199 * 341.05435 * 5 4 3 31 31 H 1.09006 * 108.83838 * 157.76878 * 6 5 4 32 32 H 1.09008 * 108.83966 * 39.42030 * 6 5 4 33 33 H 1.09001 * 109.03773 * 300.93122 * 7 6 5 34 34 H 1.09000 * 109.03689 * 182.06204 * 7 6 5 35 35 H 1.00908 * 110.99583 * 38.70142 * 10 8 7 36 36 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 37 37 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 38 38 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 39 39 H 1.08992 * 108.79455 * 212.58343 * 20 8 7 40 40 H 1.09006 * 108.78481 * 330.79938 * 20 8 7 41 41 H 1.08993 * 108.71374 * 313.18539 * 21 4 3 42 42 H 1.08998 * 108.70420 * 71.32264 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5088 1.4426 0.0006 5 6 4.0266 0.8954 -1.2303 6 6 5.2244 -0.0107 -0.8908 7 6 6.4584 0.7406 -0.6891 8 6 6.3389 1.7268 0.4945 9 1 5.8301 1.2393 1.3261 10 7 7.6798 2.1513 0.9187 11 6 8.2602 1.1916 1.8675 12 6 9.6325 1.6592 2.2787 13 1 10.0336 2.5771 1.8752 14 6 10.3765 0.9144 3.1691 15 7 11.5739 1.3227 3.5283 16 14 9.6830 -0.6738 3.8664 17 1 10.0610 -1.8079 2.9853 18 1 10.2336 -0.8990 5.2269 19 1 8.2030 -0.5770 3.9411 20 6 5.5461 2.9278 0.0525 21 6 4.0389 2.7860 0.3219 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.6765 1.9564 0.8899 28 1 1.6766 1.9564 -0.8900 29 1 4.3518 1.7048 -1.8839 30 1 3.2523 0.3103 -1.7265 31 1 5.3726 -0.7186 -1.7064 32 1 4.9983 -0.5671 0.0188 33 1 6.6865 1.2999 -1.5964 34 1 7.2712 0.0424 -0.4895 35 1 8.2856 2.2843 0.1228 36 1 7.6215 1.1196 2.7479 37 1 8.3370 0.2131 1.3933 38 1 12.0974 0.7985 4.1545 39 1 5.9166 3.8066 0.5801 40 1 5.6970 3.0737 -1.0171 41 1 3.5049 3.5247 -0.2757 42 1 3.8551 2.9912 1.3765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083421829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:53 Heat of formation + Delta-G solvation = -30.037628 kcal Electronic energy + Delta-G solvation = -17955.046505 eV Core-core repulsion = 15354.355812 eV Total energy + Delta-G solvation = -2600.690693 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.46836 -37.73359 -35.42794 -34.24768 -33.63359 -32.17426 -29.04560 -27.46283 -25.87843 -24.76873 -23.03621 -21.96937 -21.49086 -20.59054 -18.91259 -17.25688 -16.85266 -16.55111 -16.03730 -15.75521 -15.46561 -15.28086 -14.74737 -14.59240 -14.10406 -13.92344 -13.87040 -13.65062 -13.36838 -12.82075 -12.74214 -12.64585 -12.30156 -12.18643 -11.96148 -11.82678 -11.68856 -11.61469 -11.52619 -11.39318 -11.36831 -11.23904 -10.82062 -9.09946 -9.02913 -8.31175 -6.35110 1.32810 1.35217 1.47061 2.33145 2.94685 3.02883 3.49319 3.76244 3.94527 4.03113 4.15638 4.22224 4.28560 4.37565 4.50889 4.55344 4.58920 4.64662 4.74875 4.78003 4.80838 4.84820 4.86198 4.98292 5.04786 5.14079 5.18005 5.21216 5.25215 5.32794 5.36555 5.42393 5.45706 5.48265 5.55120 6.01450 6.26271 6.40356 6.59545 6.68232 6.80446 7.30227 8.85689 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032168 B = 0.005093 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.219584 B = 5496.100676 C = 5840.252809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.061 3.939 4 N -0.565 5.565 5 C 0.067 3.933 6 C -0.105 4.105 7 C -0.139 4.139 8 C 0.096 3.904 9 H 0.061 0.939 10 N -0.685 5.685 11 C 0.180 3.820 12 C -0.528 4.528 13 H 0.038 0.962 14 C 0.009 3.991 15 N -0.947 5.947 16 Si 0.949 3.051 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.254 1.254 20 C -0.103 4.103 21 C 0.073 3.927 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.334 0.666 36 H 0.018 0.982 37 H -0.017 1.017 38 H 0.268 0.732 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.741 -2.847 -10.697 25.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.066 4.066 4 N -0.290 5.290 5 C -0.061 4.061 6 C -0.144 4.144 7 C -0.178 4.178 8 C -0.014 4.014 9 H 0.079 0.921 10 N -0.314 5.314 11 C 0.051 3.949 12 C -0.566 4.566 13 H 0.056 0.944 14 C -0.188 4.188 15 N -0.587 5.587 16 Si 0.773 3.227 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.178 1.178 20 C -0.142 4.142 21 C -0.054 4.054 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.151 0.849 36 H 0.036 0.964 37 H 0.000 1.000 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.666 -2.737 -9.732 24.818 hybrid contribution 0.559 -0.670 -0.558 1.036 sum -22.107 -3.407 -10.290 24.621 Atomic orbital electron populations 1.21704 0.94530 1.02163 1.02075 1.21548 0.96146 0.95854 1.02154 1.22145 0.85940 0.97628 1.00864 1.60683 1.07855 1.24596 1.35874 1.21806 0.96771 0.97512 0.90030 1.20374 0.94135 0.98184 1.01676 1.21220 0.98573 0.99050 0.98954 1.21308 0.89465 0.94615 0.96049 0.92052 1.60627 1.03880 1.48452 1.18485 1.19692 0.93206 0.90027 0.91946 1.21370 1.00422 1.08491 1.26330 0.94396 1.25853 0.94879 1.01695 0.96389 1.70049 1.12374 1.41071 1.35246 0.85680 0.79685 0.79268 0.78090 1.19034 1.20374 1.17838 1.21313 0.93595 0.98172 1.01087 1.22225 0.93823 0.88507 1.00863 0.92583 0.92244 0.92122 0.91800 0.92526 0.91048 0.94306 0.93829 0.89826 0.91165 0.92793 0.91647 0.94198 0.84853 0.96388 0.99950 0.92317 0.91158 0.91961 0.93604 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.12 -1.91 5.89 30.59 0.18 -1.73 16 3 C 0.06 1.08 4.81 86.30 0.42 1.50 16 4 N -0.56 -12.51 4.01 -896.54 -3.59 -16.10 16 5 C 0.07 1.37 5.10 87.12 0.44 1.82 16 6 C -0.10 -2.53 5.37 28.74 0.15 -2.38 16 7 C -0.14 -4.05 4.69 28.93 0.14 -3.92 16 8 C 0.10 3.22 2.15 44.63 0.10 3.32 16 9 H 0.06 2.30 7.46 -2.39 -0.02 2.28 16 10 N -0.69 -29.11 6.12 -497.02 -3.04 -32.15 16 11 C 0.18 9.02 4.29 85.56 0.37 9.39 16 12 C -0.53 -31.64 9.87 25.60 0.25 -31.38 16 13 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 14 C 0.01 0.56 5.47 84.65 0.46 1.03 16 15 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 16 Si 0.95 45.54 27.47 68.60 1.88 47.43 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 20 C -0.10 -2.85 4.99 30.06 0.15 -2.70 16 21 C 0.07 1.70 5.37 86.36 0.46 2.17 16 22 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 23 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.99 6.39 -2.39 -0.02 0.98 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.25 8.04 -2.39 -0.02 1.23 16 28 H 0.04 0.61 8.12 -2.38 -0.02 0.60 16 29 H 0.04 0.88 6.79 -2.39 -0.02 0.87 16 30 H 0.08 1.43 5.87 -2.39 -0.01 1.41 16 31 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.05 1.47 8.08 -2.38 -0.02 1.45 16 33 H 0.06 1.74 7.60 -2.39 -0.02 1.72 16 34 H 0.04 1.33 7.27 -2.39 -0.02 1.31 16 35 H 0.33 13.92 8.48 -89.69 -0.76 13.16 16 36 H 0.02 0.93 7.12 -2.39 -0.02 0.91 16 37 H -0.02 -0.84 6.77 -2.39 -0.02 -0.86 16 38 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.07 2.13 7.96 -2.39 -0.02 2.11 16 40 H 0.06 1.56 6.67 -2.38 -0.02 1.54 16 41 H 0.05 0.91 8.02 -2.39 -0.02 0.89 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -65.90 316.07 -0.46 -66.37 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.15 Total: 18.53 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 3.84 Total: -24.02 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -6.33 Total: -108.31 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Total: -65.90 -0.46 -66.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083421829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.328 kcal (2) G-P(sol) polarization free energy of solvation -65.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds