Wall clock time and date at job start Mon Mar 30 2020 03:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46873 * 2 1 4 4 N 1.46893 * 109.47231 * 120.00194 * 2 1 3 5 5 C 1.46898 * 111.00181 * 306.04734 * 4 2 1 6 6 C 1.46906 * 111.00116 * 70.00120 * 4 2 1 7 7 C 1.52991 * 109.47267 * 169.99837 * 6 4 2 8 8 N 1.46906 * 109.47267 * 180.02562 * 7 6 4 9 9 C 1.46893 * 111.00098 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47250 * 185.37571 * 9 8 7 11 11 C 1.50701 * 115.55139 * 294.80834 * 10 9 8 12 12 H 1.07998 * 119.99931 * 95.20118 * 11 10 9 13 13 C 1.37881 * 119.99675 * 274.92507 * 11 10 9 14 14 N 1.31509 * 120.00118 * 355.41870 * 13 11 10 15 15 Si 1.86797 * 119.99851 * 175.42112 * 13 11 10 16 16 H 1.48500 * 109.47305 * 59.99777 * 15 13 11 17 17 H 1.48502 * 109.46877 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47169 * 299.99984 * 15 13 11 19 19 C 1.53005 * 117.49771 * 80.47079 * 10 9 8 20 20 C 1.52998 * 117.50158 * 149.12935 * 10 9 8 21 21 H 1.09003 * 109.46936 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46866 * 299.99931 * 1 2 3 23 23 H 1.08997 * 109.47254 * 59.99718 * 1 2 3 24 24 H 1.09007 * 109.47128 * 240.00516 * 2 1 3 25 25 H 1.08997 * 109.46720 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47411 * 300.00186 * 3 2 1 27 27 H 1.08997 * 109.46797 * 60.00403 * 3 2 1 28 28 H 1.09001 * 109.47055 * 183.95397 * 5 4 2 29 29 H 1.08993 * 109.46958 * 303.95266 * 5 4 2 30 30 H 1.08999 * 109.47245 * 63.95601 * 5 4 2 31 31 H 1.09007 * 109.46982 * 49.99816 * 6 4 2 32 32 H 1.08999 * 109.46878 * 290.00650 * 6 4 2 33 33 H 1.08998 * 109.47269 * 60.00114 * 7 6 4 34 34 H 1.08995 * 109.47367 * 299.99646 * 7 6 4 35 35 H 1.00901 * 110.99671 * 303.95659 * 8 7 6 36 36 H 1.09004 * 109.46845 * 65.38026 * 9 8 7 37 37 H 1.08997 * 109.47456 * 305.38043 * 9 8 7 38 38 H 0.96998 * 120.00611 * 185.00609 * 14 13 11 39 39 H 1.08998 * 117.50096 * 215.00821 * 19 10 9 40 40 H 1.08999 * 117.49296 * 0.02838 * 19 10 9 41 41 H 1.09004 * 117.49634 * 359.97438 * 20 10 9 42 42 H 1.08994 * 117.49846 * 144.97788 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4344 -0.1150 2.4166 6 6 1.7530 -2.1350 1.1202 7 6 2.4886 -2.8526 2.2536 8 7 2.2223 -4.2951 2.1741 9 6 2.9146 -5.0183 3.2491 10 6 2.7243 -6.5240 3.0557 11 6 1.3089 -7.0232 3.1925 12 1 0.6927 -7.1468 2.3143 13 6 0.8027 -7.3273 4.4385 14 7 1.5811 -7.2684 5.4968 15 14 -0.9888 -7.8231 4.6231 16 1 -1.2491 -9.0459 3.8217 17 1 -1.2817 -8.0972 6.0529 18 1 -1.8596 -6.7209 4.1413 19 6 3.6250 -7.2248 2.0365 20 6 3.8478 -7.4455 3.5348 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.8665 -0.5989 3.2925 29 1 1.6467 0.9536 2.4501 30 1 0.3556 -0.2711 2.4105 31 1 2.1026 -2.5170 0.1610 32 1 0.6815 -2.3119 1.2129 33 1 2.1390 -2.4706 3.2128 34 1 3.5600 -2.6757 2.1607 35 1 1.2308 -4.4814 2.1927 36 1 2.5006 -4.7205 4.2124 37 1 3.9779 -4.7799 3.2213 38 1 1.2459 -7.5517 6.3618 39 1 3.1939 -8.0468 1.4651 40 1 4.3534 -6.6131 1.5043 41 1 4.7228 -6.9789 3.9874 42 1 3.5632 -8.4125 3.9494 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:26 Heat of formation + Delta-G solvation = 22.054767 kcal Electronic energy + Delta-G solvation = -17636.059041 eV Core-core repulsion = 15037.627243 eV Total energy + Delta-G solvation = -2598.431797 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.69367 -36.86603 -34.53274 -31.92047 -31.70298 -28.38768 -27.32365 -26.19238 -25.33525 -23.42472 -21.23440 -20.78690 -19.65016 -18.93387 -16.31839 -15.90391 -15.45243 -14.80254 -14.58357 -14.50704 -14.05877 -13.76987 -13.22888 -13.11348 -12.92846 -12.36675 -12.17154 -12.01290 -11.63607 -11.53048 -11.33039 -11.27132 -10.94399 -10.89627 -10.82303 -10.80454 -10.49882 -10.42198 -10.03591 -9.28429 -8.80281 -8.36086 -8.25993 -8.00776 -7.45559 -5.98607 -4.06015 3.29937 3.35418 3.37774 3.87322 4.41407 4.75035 4.95613 5.07836 5.14102 5.26676 5.28951 5.32519 5.46779 5.52706 5.57673 5.62821 5.70477 5.75570 5.82131 5.85508 5.97680 6.11584 6.13364 6.20770 6.29896 6.37736 6.54238 6.63213 6.88680 6.89493 6.97839 7.12370 7.15502 7.25799 7.55698 7.66269 7.91040 8.03484 8.30529 8.54128 8.97472 9.59397 11.08528 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.005083 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.589963 B = 5507.006200 C = 6079.839996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.075 3.925 3 C -0.142 4.142 4 N -0.535 5.535 5 C 0.016 3.984 6 C 0.058 3.942 7 C 0.063 3.937 8 N -0.681 5.681 9 C 0.109 3.891 10 C 0.046 3.954 11 C -0.492 4.492 12 H 0.059 0.941 13 C 0.069 3.931 14 N -0.880 5.880 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.201 4.201 20 C -0.156 4.156 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.020 0.980 34 H 0.070 0.930 35 H 0.344 0.656 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.259 0.741 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 13.918 -7.448 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.034 4.034 3 C -0.200 4.200 4 N -0.259 5.259 5 C -0.133 4.133 6 C -0.070 4.070 7 C -0.067 4.067 8 N -0.313 5.313 9 C -0.020 4.020 10 C 0.045 3.955 11 C -0.530 4.530 12 H 0.077 0.923 13 C -0.134 4.134 14 N -0.517 5.517 15 Si 0.715 3.285 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.238 4.238 20 C -0.194 4.194 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.163 0.837 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.506 13.903 -7.655 15.879 hybrid contribution -2.415 -0.235 1.037 2.639 sum -1.910 13.668 -6.619 15.306 Atomic orbital electron populations 1.22490 0.97752 1.02258 1.02136 1.21706 0.92616 0.95421 0.93621 1.21836 1.01837 0.95011 1.01324 1.62169 1.58411 1.03367 1.01977 1.22500 0.97375 1.00144 0.93242 1.22094 0.98048 0.86236 1.00589 1.21868 1.00349 0.89117 0.95367 1.60359 1.16361 1.05009 1.49568 1.21417 0.95180 0.94534 0.90896 1.18747 0.91471 0.88263 0.97009 1.20434 0.95718 1.44565 0.92262 0.92308 1.25005 0.97226 0.95157 0.95981 1.69995 1.35639 1.46674 0.99426 0.86747 0.85774 0.79074 0.76897 1.20283 1.21414 1.20304 1.22866 1.04909 1.03835 0.92194 1.22495 1.00034 1.02466 0.94406 0.92370 0.92318 0.92297 0.90052 0.91887 0.92542 0.92722 0.91145 0.91559 0.95359 0.90146 0.94914 0.96237 0.91198 0.83735 0.95272 0.94245 0.93101 0.90987 0.91752 0.92366 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.86 8.44 37.16 0.31 -1.55 16 2 C 0.08 0.79 2.92 -67.71 -0.20 0.60 16 3 C -0.14 -1.28 9.12 37.16 0.34 -0.94 16 4 N -0.54 -6.74 4.71 -234.89 -1.11 -7.85 16 5 C 0.02 0.18 8.44 60.06 0.51 0.69 16 6 C 0.06 0.83 4.79 -3.83 -0.02 0.81 16 7 C 0.06 1.05 5.60 -3.83 -0.02 1.03 16 8 N -0.68 -13.55 6.47 -113.79 -0.74 -14.29 16 9 C 0.11 2.47 5.54 -3.83 -0.02 2.45 16 10 C 0.05 1.14 1.65 -155.66 -0.26 0.88 16 11 C -0.49 -13.26 8.33 -34.44 -0.29 -13.55 16 12 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 13 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 14 N -0.88 -24.92 12.65 55.43 0.70 -24.22 16 15 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.20 -4.60 9.96 -26.69 -0.27 -4.86 16 20 C -0.16 -3.79 9.14 -26.69 -0.24 -4.04 16 21 H 0.06 0.64 6.91 -51.93 -0.36 0.28 16 22 H 0.06 0.58 6.42 -51.93 -0.33 0.25 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.87 7.93 -51.92 -0.41 0.46 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.48 6.47 -51.93 -0.34 0.14 16 28 H 0.07 0.88 6.47 -51.93 -0.34 0.55 16 29 H 0.07 0.68 6.30 -51.93 -0.33 0.35 16 30 H 0.03 0.33 6.46 -51.93 -0.34 -0.01 16 31 H 0.08 1.17 7.93 -51.92 -0.41 0.75 16 32 H 0.03 0.47 7.06 -51.93 -0.37 0.11 16 33 H 0.02 0.33 6.55 -51.93 -0.34 -0.01 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.34 7.12 8.31 -39.29 -0.33 6.80 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.26 7.06 8.32 -40.82 -0.34 6.73 16 39 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -27.52 328.36 -9.12 -36.63 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.65 Total: 5.50 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -0.25 Total: -16.70 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -1.14 Total: -46.35 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.52 -9.12 -36.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.689 kcal (2) G-P(sol) polarization free energy of solvation -27.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds