Wall clock time and date at job start Mon Mar 30 2020 03:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46873 * 2 1 4 4 N 1.46893 * 109.47231 * 120.00194 * 2 1 3 5 5 C 1.46898 * 111.00181 * 306.04734 * 4 2 1 6 6 C 1.46906 * 111.00116 * 70.00120 * 4 2 1 7 7 C 1.52991 * 109.47267 * 169.99837 * 6 4 2 8 8 N 1.46906 * 109.47267 * 180.02562 * 7 6 4 9 9 C 1.46893 * 111.00098 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47250 * 185.37571 * 9 8 7 11 11 C 1.50701 * 115.55139 * 294.80834 * 10 9 8 12 12 H 1.07998 * 119.99931 * 95.20118 * 11 10 9 13 13 C 1.37881 * 119.99675 * 274.92507 * 11 10 9 14 14 N 1.31509 * 120.00118 * 355.41870 * 13 11 10 15 15 Si 1.86797 * 119.99851 * 175.42112 * 13 11 10 16 16 H 1.48500 * 109.47305 * 59.99777 * 15 13 11 17 17 H 1.48502 * 109.46877 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47169 * 299.99984 * 15 13 11 19 19 C 1.53005 * 117.49771 * 80.47079 * 10 9 8 20 20 C 1.52998 * 117.50158 * 149.12935 * 10 9 8 21 21 H 1.09003 * 109.46936 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46866 * 299.99931 * 1 2 3 23 23 H 1.08997 * 109.47254 * 59.99718 * 1 2 3 24 24 H 1.09007 * 109.47128 * 240.00516 * 2 1 3 25 25 H 1.08997 * 109.46720 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47411 * 300.00186 * 3 2 1 27 27 H 1.08997 * 109.46797 * 60.00403 * 3 2 1 28 28 H 1.09001 * 109.47055 * 183.95397 * 5 4 2 29 29 H 1.08993 * 109.46958 * 303.95266 * 5 4 2 30 30 H 1.08999 * 109.47245 * 63.95601 * 5 4 2 31 31 H 1.09007 * 109.46982 * 49.99816 * 6 4 2 32 32 H 1.08999 * 109.46878 * 290.00650 * 6 4 2 33 33 H 1.08998 * 109.47269 * 60.00114 * 7 6 4 34 34 H 1.08995 * 109.47367 * 299.99646 * 7 6 4 35 35 H 1.00901 * 110.99671 * 303.95659 * 8 7 6 36 36 H 1.09004 * 109.46845 * 65.38026 * 9 8 7 37 37 H 1.08997 * 109.47456 * 305.38043 * 9 8 7 38 38 H 0.96998 * 120.00611 * 185.00609 * 14 13 11 39 39 H 1.08998 * 117.50096 * 215.00821 * 19 10 9 40 40 H 1.08999 * 117.49296 * 0.02838 * 19 10 9 41 41 H 1.09004 * 117.49634 * 359.97438 * 20 10 9 42 42 H 1.08994 * 117.49846 * 144.97788 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4344 -0.1150 2.4166 6 6 1.7530 -2.1350 1.1202 7 6 2.4886 -2.8526 2.2536 8 7 2.2223 -4.2951 2.1741 9 6 2.9146 -5.0183 3.2491 10 6 2.7243 -6.5240 3.0557 11 6 1.3089 -7.0232 3.1925 12 1 0.6927 -7.1468 2.3143 13 6 0.8027 -7.3273 4.4385 14 7 1.5811 -7.2684 5.4968 15 14 -0.9888 -7.8231 4.6231 16 1 -1.2491 -9.0459 3.8217 17 1 -1.2817 -8.0972 6.0529 18 1 -1.8596 -6.7209 4.1413 19 6 3.6250 -7.2248 2.0365 20 6 3.8478 -7.4455 3.5348 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.8665 -0.5989 3.2925 29 1 1.6467 0.9536 2.4501 30 1 0.3556 -0.2711 2.4105 31 1 2.1026 -2.5170 0.1610 32 1 0.6815 -2.3119 1.2129 33 1 2.1390 -2.4706 3.2128 34 1 3.5600 -2.6757 2.1607 35 1 1.2308 -4.4814 2.1927 36 1 2.5006 -4.7205 4.2124 37 1 3.9779 -4.7799 3.2213 38 1 1.2459 -7.5517 6.3618 39 1 3.1939 -8.0468 1.4651 40 1 4.3534 -6.6131 1.5043 41 1 4.7228 -6.9789 3.9874 42 1 3.5632 -8.4125 3.9494 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:25 Heat of formation + Delta-G solvation = 4.883132 kcal Electronic energy + Delta-G solvation = -17636.803659 eV Core-core repulsion = 15037.627243 eV Total energy + Delta-G solvation = -2599.176415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71158 -38.66660 -36.04247 -33.94942 -32.81785 -29.62523 -28.13694 -27.68812 -27.01119 -24.96075 -22.84648 -22.36754 -20.95574 -20.47216 -17.92497 -17.29662 -16.77228 -16.61799 -15.97288 -15.69035 -15.50241 -15.25684 -14.49395 -14.47591 -14.04346 -13.85210 -13.37587 -13.25165 -12.97888 -12.91282 -12.81343 -12.74007 -12.52985 -12.33053 -12.12714 -12.07377 -11.92420 -11.82725 -11.57885 -11.18128 -10.81163 -10.36358 -9.91912 -9.27722 -9.10327 -8.06522 -6.19319 1.42438 1.42831 1.50286 2.43428 2.81448 3.20364 3.47484 3.81558 3.99806 4.08186 4.11310 4.23855 4.37096 4.43237 4.47493 4.58949 4.60350 4.67707 4.73399 4.76640 4.82701 4.94459 4.96751 4.99332 5.01133 5.04201 5.09042 5.11455 5.15235 5.31243 5.32188 5.42027 5.65438 5.72179 5.81945 6.10017 6.19376 6.34854 6.48945 6.63062 6.89975 7.48845 8.99996 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.005083 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.589963 B = 5507.006200 C = 6079.839996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.072 3.928 3 C -0.137 4.137 4 N -0.542 5.542 5 C 0.017 3.983 6 C 0.070 3.930 7 C 0.069 3.931 8 N -0.679 5.679 9 C 0.123 3.877 10 C 0.021 3.979 11 C -0.503 4.503 12 H 0.053 0.947 13 C 0.024 3.976 14 N -0.909 5.909 15 Si 0.948 3.052 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.271 1.271 19 C -0.178 4.178 20 C -0.161 4.161 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.016 0.984 34 H 0.068 0.932 35 H 0.339 0.661 36 H -0.001 1.001 37 H 0.048 0.952 38 H 0.258 0.742 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 15.157 -8.598 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.037 4.037 3 C -0.195 4.195 4 N -0.267 5.267 5 C -0.131 4.131 6 C -0.058 4.058 7 C -0.061 4.061 8 N -0.309 5.309 9 C -0.007 4.007 10 C 0.021 3.979 11 C -0.540 4.540 12 H 0.071 0.929 13 C -0.176 4.176 14 N -0.547 5.547 15 Si 0.774 3.226 16 H -0.199 1.199 17 H -0.214 1.214 18 H -0.196 1.196 19 C -0.215 4.215 20 C -0.200 4.200 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.034 0.966 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.017 0.983 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.034 15.155 -8.826 17.538 hybrid contribution -2.234 -0.592 1.359 2.681 sum -2.200 14.563 -7.467 16.513 Atomic orbital electron populations 1.22440 0.97155 1.01613 1.02958 1.21813 0.93115 0.96188 0.92539 1.21800 1.01505 0.93853 1.02325 1.62166 1.58954 1.02394 1.03148 1.22504 0.97208 1.01006 0.92415 1.21882 0.97307 0.87384 0.99227 1.21864 1.00585 0.87360 0.96306 1.60340 1.15709 1.06823 1.48060 1.21156 0.95668 0.93604 0.90251 1.18923 0.90949 0.89486 0.98559 1.20664 0.96819 1.44417 0.92147 0.92894 1.25670 1.00853 0.95340 0.95710 1.70109 1.37254 1.47658 0.99689 0.85785 0.81300 0.78866 0.76689 1.19911 1.21386 1.19567 1.22838 1.04109 1.03292 0.91301 1.22399 1.00397 1.01402 0.95762 0.93720 0.92270 0.90705 0.90158 0.92357 0.90842 0.92437 0.92361 0.89815 0.95344 0.90263 0.95274 0.96634 0.91315 0.84347 0.98266 0.93394 0.93295 0.91052 0.89688 0.91299 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 8.44 71.98 0.61 -2.67 16 2 C 0.07 1.37 2.92 44.92 0.13 1.50 16 3 C -0.14 -2.12 9.12 71.98 0.66 -1.46 16 4 N -0.54 -12.87 4.71 -897.05 -4.23 -17.09 16 5 C 0.02 0.37 8.44 127.69 1.08 1.44 16 6 C 0.07 1.93 4.79 86.30 0.41 2.35 16 7 C 0.07 2.24 5.60 86.30 0.48 2.72 16 8 N -0.68 -26.67 6.47 -513.91 -3.32 -30.00 16 9 C 0.12 5.57 5.54 86.31 0.48 6.05 16 10 C 0.02 1.07 1.65 -52.93 -0.09 0.98 16 11 C -0.50 -27.16 8.33 25.60 0.21 -26.94 16 12 H 0.05 2.86 7.82 -2.91 -0.02 2.84 16 13 C 0.02 1.32 5.43 84.66 0.46 1.78 16 14 N -0.91 -52.06 12.65 21.45 0.27 -51.79 16 15 Si 0.95 43.13 29.54 68.60 2.03 45.15 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 C -0.18 -7.95 9.96 30.62 0.30 -7.65 16 20 C -0.16 -7.85 9.14 30.62 0.28 -7.57 16 21 H 0.04 0.92 6.91 -2.39 -0.02 0.90 16 22 H 0.06 1.05 6.42 -2.39 -0.02 1.03 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.08 1.56 7.93 -2.38 -0.02 1.55 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.85 6.47 -2.39 -0.02 0.84 16 28 H 0.06 1.42 6.47 -2.39 -0.02 1.40 16 29 H 0.08 1.54 6.30 -2.39 -0.02 1.52 16 30 H 0.03 0.62 6.46 -2.39 -0.02 0.61 16 31 H 0.08 2.20 7.93 -2.38 -0.02 2.18 16 32 H 0.03 0.82 7.06 -2.39 -0.02 0.81 16 33 H 0.02 0.53 6.55 -2.39 -0.02 0.51 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.34 13.98 8.31 -89.69 -0.75 13.23 16 36 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 37 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 38 H 0.26 14.23 8.32 -92.71 -0.77 13.45 16 39 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -57.49 328.36 -0.01 -57.50 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.22 Total: 25.68 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 5.02 Total: -29.45 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -7.28 Total: -98.88 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -57.49 -0.01 -57.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.381 kcal (2) G-P(sol) polarization free energy of solvation -57.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds