Wall clock time and date at job start Mon Mar 30 2020 03:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46870 * 2 1 4 4 H 1.08991 * 109.47488 * 303.18434 * 3 2 1 5 5 C 1.50700 * 109.46808 * 183.17806 * 3 2 1 6 6 H 1.08001 * 119.99856 * 240.00050 * 5 3 2 7 7 C 1.37878 * 120.00179 * 60.00416 * 5 3 2 8 8 N 1.31514 * 119.99482 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00222 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46756 * 60.00079 * 9 7 5 11 11 H 1.48492 * 109.47311 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47386 * 300.00624 * 9 7 5 13 13 N 1.46906 * 109.47045 * 63.18298 * 3 2 1 14 14 C 1.46901 * 111.00084 * 68.70523 * 13 3 2 15 15 C 1.46894 * 111.00051 * 192.66617 * 13 3 2 16 16 H 1.08999 * 110.01567 * 320.43737 * 15 13 3 17 17 C 1.54271 * 110.03050 * 199.05591 * 15 13 3 18 18 C 1.54890 * 104.19318 * 217.10260 * 17 15 13 19 19 C 1.54883 * 102.74962 * 37.94053 * 18 17 15 20 20 C 1.53863 * 110.03761 * 81.88451 * 15 13 3 21 21 H 1.09001 * 110.03429 * 238.56941 * 20 15 13 22 22 C 1.52998 * 110.03177 * 0.02562 * 20 15 13 23 23 N 1.46899 * 109.47602 * 180.22793 * 22 20 15 24 24 H 1.09000 * 109.46694 * 64.78444 * 1 2 3 25 25 H 1.08995 * 109.46896 * 184.78387 * 1 2 3 26 26 H 1.08994 * 109.47171 * 304.78460 * 1 2 3 27 27 H 1.09005 * 109.47062 * 240.00603 * 2 1 3 28 28 H 1.08996 * 109.47098 * 119.99989 * 2 1 3 29 29 H 0.97005 * 119.99738 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47109 * 67.99231 * 14 13 3 31 31 H 1.08995 * 109.47426 * 187.99566 * 14 13 3 32 32 H 1.09004 * 109.47213 * 307.99596 * 14 13 3 33 33 H 1.09003 * 110.48537 * 335.77970 * 17 15 13 34 34 H 1.08997 * 110.49153 * 98.42270 * 17 15 13 35 35 H 1.09001 * 110.75402 * 156.25278 * 18 17 15 36 36 H 1.09005 * 110.75568 * 279.44177 * 18 17 15 37 37 H 1.08997 * 110.49072 * 80.73632 * 19 18 17 38 38 H 1.09005 * 110.49070 * 203.24782 * 19 18 17 39 39 H 1.08999 * 109.47365 * 300.23100 * 22 20 15 40 40 H 1.09000 * 109.47455 * 60.22554 * 22 20 15 41 41 H 1.00903 * 110.99743 * 56.04106 * 23 22 20 42 42 H 1.00897 * 111.00441 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6309 1.9726 -0.8600 5 6 3.5449 1.4433 -0.0788 6 1 4.1268 1.8961 0.7104 7 6 4.1791 0.8658 -1.1584 8 7 3.4705 0.3149 -2.1196 9 14 6.0445 0.8674 -1.2564 10 1 6.6022 0.1456 -0.0845 11 1 6.4751 0.1896 -2.5054 12 1 6.5391 2.2676 -1.2565 13 7 1.6141 2.1125 1.2361 14 6 2.3095 1.5547 2.4037 15 6 1.8186 3.5643 1.1454 16 1 2.7586 3.7776 0.6366 17 6 1.8293 4.1857 2.5574 18 6 1.1102 5.5459 2.3791 19 6 -0.0114 5.2094 1.3654 20 6 0.6484 4.2152 0.3875 21 1 1.0201 4.7451 -0.4895 22 6 -0.3623 3.1465 -0.0338 23 7 -1.4707 3.7800 -0.7604 24 1 -0.3633 0.4378 -0.9298 25 1 -0.3633 -1.0240 0.0857 26 1 -0.3633 0.5862 0.8440 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.9166 -0.0910 -2.8793 30 1 3.3671 1.8142 2.3549 31 1 1.8762 1.9659 3.3154 32 1 2.2014 0.4701 2.4071 33 1 1.2819 3.5534 3.2565 34 1 2.8529 4.3373 2.8998 35 1 0.6871 5.8859 3.3244 36 1 1.7917 6.2927 1.9717 37 1 -0.8561 4.7425 1.8719 38 1 -0.3327 6.1084 0.8394 39 1 0.1272 2.4184 -0.6806 40 1 -0.7493 2.6430 0.8521 41 1 -1.1305 4.3074 -1.5505 42 1 -2.1520 3.0944 -1.0500 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084214111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:55 Heat of formation + Delta-G solvation = -0.200968 kcal Electronic energy + Delta-G solvation = -19257.432316 eV Core-core repulsion = 16658.035438 eV Total energy + Delta-G solvation = -2599.396878 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.07432 -35.70978 -33.77144 -32.36599 -31.04030 -28.58768 -27.23948 -26.46240 -24.32301 -22.95680 -22.42348 -19.98127 -19.14168 -18.17535 -16.48862 -15.68840 -15.57940 -14.80993 -14.36849 -13.97908 -13.72327 -13.22821 -12.85891 -12.77855 -12.68260 -12.16503 -11.57186 -11.40919 -11.23440 -11.02476 -10.82221 -10.78218 -10.63996 -10.45046 -10.40748 -10.29651 -10.02114 -9.87343 -9.84953 -9.57581 -9.32864 -9.04887 -8.42644 -7.91105 -7.03866 -5.99744 -4.12311 3.25958 3.31373 3.34043 4.38200 4.97350 5.07713 5.14719 5.24018 5.35677 5.51718 5.80503 6.04080 6.07570 6.13454 6.15841 6.23662 6.25405 6.36073 6.38147 6.44175 6.47286 6.55136 6.60061 6.65721 6.71199 6.78079 6.86408 6.93917 7.04458 7.15333 7.18855 7.38658 7.60703 7.68456 7.77345 7.89928 8.00497 8.17400 8.36946 8.50686 8.98234 9.54709 10.99042 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.009157 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.314220 B = 3056.933450 C = 3501.675936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.210 3.790 4 H 0.044 0.956 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.529 5.529 14 C 0.033 3.967 15 C 0.088 3.912 16 H 0.053 0.947 17 C -0.124 4.124 18 C -0.128 4.128 19 C -0.099 4.099 20 C -0.076 4.076 21 H 0.055 0.945 22 C 0.069 3.931 23 N -0.860 5.860 24 H 0.035 0.965 25 H 0.023 0.977 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.026 0.974 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.329 0.671 42 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 5.478 5.179 9.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C 0.103 3.897 4 H 0.061 0.939 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.253 5.253 14 C -0.116 4.116 15 C -0.022 4.022 16 H 0.071 0.929 17 C -0.161 4.161 18 C -0.166 4.166 19 C -0.137 4.137 20 C -0.095 4.095 21 H 0.074 0.926 22 C -0.061 4.061 23 N -0.387 5.387 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.325 5.666 5.746 10.253 hybrid contribution 2.445 -0.534 -1.112 2.738 sum -3.880 5.133 4.633 7.929 Atomic orbital electron populations 1.21835 0.99056 0.98546 1.00346 1.21592 0.92054 0.99364 1.01880 1.19406 0.92582 0.90985 0.86688 0.93866 1.21749 0.92926 1.37417 1.06011 0.92601 1.24900 0.97786 0.95129 0.95614 1.69860 1.34956 1.37956 1.09733 0.86764 0.86396 0.78153 0.77324 1.20380 1.21279 1.20440 1.62615 1.56048 1.01646 1.04974 1.22238 0.96662 0.99754 0.92942 1.22134 0.96613 0.89321 0.94126 0.92944 1.22619 0.99608 0.95973 0.97929 1.22499 0.97988 0.97203 0.98885 1.22203 0.97137 0.98132 0.96183 1.21684 0.95089 0.95545 0.97224 0.92606 1.22156 0.90105 0.95158 0.98640 1.58920 1.17636 1.31155 1.31033 0.94589 0.95765 0.92757 0.89215 0.94889 0.92913 0.95570 0.93776 0.92305 0.90786 0.92703 0.92459 0.92303 0.91631 0.92759 0.92623 0.90351 0.85992 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.66 37.16 0.32 -2.43 16 2 C -0.11 -2.54 5.17 -26.73 -0.14 -2.68 16 3 C 0.21 4.91 0.97 -68.86 -0.07 4.84 16 4 H 0.04 1.12 5.70 -51.93 -0.30 0.83 16 5 C -0.54 -14.17 6.97 -34.44 -0.24 -14.41 16 6 H 0.06 1.48 6.06 -52.49 -0.32 1.16 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.89 -24.52 11.30 55.43 0.63 -23.90 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.53 -10.58 2.50 -226.96 -0.57 -11.14 16 14 C 0.03 0.63 8.02 60.07 0.48 1.11 16 15 C 0.09 1.65 2.68 -66.60 -0.18 1.47 16 16 H 0.05 1.14 7.15 -51.93 -0.37 0.77 16 17 C -0.12 -1.96 5.27 -25.07 -0.13 -2.09 16 18 C -0.13 -1.79 6.91 -24.74 -0.17 -1.96 16 19 C -0.10 -1.47 6.08 -25.07 -0.15 -1.63 16 20 C -0.08 -1.30 2.97 -89.51 -0.27 -1.57 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 22 C 0.07 1.18 4.22 -3.83 -0.02 1.17 16 23 N -0.86 -12.63 9.32 -10.37 -0.10 -12.73 16 24 H 0.04 0.70 7.34 -51.93 -0.38 0.32 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.03 6.29 -51.93 -0.33 0.70 16 27 H 0.09 2.34 5.99 -51.93 -0.31 2.03 16 28 H 0.03 0.76 6.37 -51.93 -0.33 0.43 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.03 0.54 6.34 -51.93 -0.33 0.21 16 31 H 0.04 0.74 5.99 -51.93 -0.31 0.43 16 32 H 0.06 1.17 6.22 -51.93 -0.32 0.84 16 33 H 0.07 1.17 6.18 -51.93 -0.32 0.85 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.01 7.83 -51.93 -0.41 0.60 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.11 3.25 -51.93 -0.17 0.94 16 40 H 0.08 1.43 6.82 -51.93 -0.35 1.08 16 41 H 0.33 4.60 8.99 -39.29 -0.35 4.24 16 42 H 0.33 4.44 9.08 -39.29 -0.36 4.08 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -26.21 299.98 -8.12 -34.33 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.93 Total: 9.36 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -0.65 Total: -16.45 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.04 Total: -47.77 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.21 -8.12 -34.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.128 kcal (2) G-P(sol) polarization free energy of solvation -26.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds