Wall clock time and date at job start Mon Mar 30 2020 03:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46870 * 2 1 4 4 H 1.08991 * 109.47488 * 303.18434 * 3 2 1 5 5 C 1.50700 * 109.46808 * 183.17806 * 3 2 1 6 6 H 1.08001 * 119.99856 * 240.00050 * 5 3 2 7 7 C 1.37878 * 120.00179 * 60.00416 * 5 3 2 8 8 N 1.31514 * 119.99482 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00222 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46756 * 60.00079 * 9 7 5 11 11 H 1.48492 * 109.47311 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47386 * 300.00624 * 9 7 5 13 13 N 1.46906 * 109.47045 * 63.18298 * 3 2 1 14 14 C 1.46901 * 111.00084 * 68.70523 * 13 3 2 15 15 C 1.46894 * 111.00051 * 192.66617 * 13 3 2 16 16 H 1.08999 * 110.01567 * 320.43737 * 15 13 3 17 17 C 1.54271 * 110.03050 * 199.05591 * 15 13 3 18 18 C 1.54890 * 104.19318 * 217.10260 * 17 15 13 19 19 C 1.54883 * 102.74962 * 37.94053 * 18 17 15 20 20 C 1.53863 * 110.03761 * 81.88451 * 15 13 3 21 21 H 1.09001 * 110.03429 * 238.56941 * 20 15 13 22 22 C 1.52998 * 110.03177 * 0.02562 * 20 15 13 23 23 N 1.46899 * 109.47602 * 180.22793 * 22 20 15 24 24 H 1.09000 * 109.46694 * 64.78444 * 1 2 3 25 25 H 1.08995 * 109.46896 * 184.78387 * 1 2 3 26 26 H 1.08994 * 109.47171 * 304.78460 * 1 2 3 27 27 H 1.09005 * 109.47062 * 240.00603 * 2 1 3 28 28 H 1.08996 * 109.47098 * 119.99989 * 2 1 3 29 29 H 0.97005 * 119.99738 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47109 * 67.99231 * 14 13 3 31 31 H 1.08995 * 109.47426 * 187.99566 * 14 13 3 32 32 H 1.09004 * 109.47213 * 307.99596 * 14 13 3 33 33 H 1.09003 * 110.48537 * 335.77970 * 17 15 13 34 34 H 1.08997 * 110.49153 * 98.42270 * 17 15 13 35 35 H 1.09001 * 110.75402 * 156.25278 * 18 17 15 36 36 H 1.09005 * 110.75568 * 279.44177 * 18 17 15 37 37 H 1.08997 * 110.49072 * 80.73632 * 19 18 17 38 38 H 1.09005 * 110.49070 * 203.24782 * 19 18 17 39 39 H 1.08999 * 109.47365 * 300.23100 * 22 20 15 40 40 H 1.09000 * 109.47455 * 60.22554 * 22 20 15 41 41 H 1.00903 * 110.99743 * 56.04106 * 23 22 20 42 42 H 1.00897 * 111.00441 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6309 1.9726 -0.8600 5 6 3.5449 1.4433 -0.0788 6 1 4.1268 1.8961 0.7104 7 6 4.1791 0.8658 -1.1584 8 7 3.4705 0.3149 -2.1196 9 14 6.0445 0.8674 -1.2564 10 1 6.6022 0.1456 -0.0845 11 1 6.4751 0.1896 -2.5054 12 1 6.5391 2.2676 -1.2565 13 7 1.6141 2.1125 1.2361 14 6 2.3095 1.5547 2.4037 15 6 1.8186 3.5643 1.1454 16 1 2.7586 3.7776 0.6366 17 6 1.8293 4.1857 2.5574 18 6 1.1102 5.5459 2.3791 19 6 -0.0114 5.2094 1.3654 20 6 0.6484 4.2152 0.3875 21 1 1.0201 4.7451 -0.4895 22 6 -0.3623 3.1465 -0.0338 23 7 -1.4707 3.7800 -0.7604 24 1 -0.3633 0.4378 -0.9298 25 1 -0.3633 -1.0240 0.0857 26 1 -0.3633 0.5862 0.8440 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.9166 -0.0910 -2.8793 30 1 3.3671 1.8142 2.3549 31 1 1.8762 1.9659 3.3154 32 1 2.2014 0.4701 2.4071 33 1 1.2819 3.5534 3.2565 34 1 2.8529 4.3373 2.8998 35 1 0.6871 5.8859 3.3244 36 1 1.7917 6.2927 1.9717 37 1 -0.8561 4.7425 1.8719 38 1 -0.3327 6.1084 0.8394 39 1 0.1272 2.4184 -0.6806 40 1 -0.7493 2.6430 0.8521 41 1 -1.1305 4.3074 -1.5505 42 1 -2.1520 3.0944 -1.0500 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084214111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:55 Heat of formation + Delta-G solvation = -16.269312 kcal Electronic energy + Delta-G solvation = -19258.129092 eV Core-core repulsion = 16658.035438 eV Total energy + Delta-G solvation = -2600.093654 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57588 -37.33288 -35.13094 -34.24667 -32.74214 -29.92332 -28.89392 -28.07368 -26.06395 -24.42604 -24.05830 -21.26476 -20.92786 -19.69256 -18.40623 -17.21145 -17.03764 -16.59317 -15.77355 -15.51488 -15.32770 -14.56568 -14.46621 -14.39657 -14.18785 -13.82674 -13.27993 -13.19305 -12.86653 -12.70555 -12.52252 -12.39952 -12.22362 -12.04820 -11.77350 -11.64757 -11.57610 -11.39372 -11.34508 -11.24049 -11.04804 -10.86637 -10.42302 -9.27948 -8.80744 -8.01880 -6.23744 1.34305 1.35701 1.42201 2.38358 3.15015 3.46926 3.74810 3.84790 4.07632 4.23334 4.48781 4.54037 4.66468 4.71211 4.78185 4.80795 4.84099 4.88439 4.89721 4.93340 5.03347 5.12754 5.15803 5.19827 5.29911 5.34749 5.37243 5.42883 5.50851 5.54919 5.57357 5.68416 5.69868 5.88354 6.10516 6.25244 6.38800 6.45760 6.72240 6.79809 7.00196 7.46254 8.91086 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.009157 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.314220 B = 3056.933450 C = 3501.675936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C 0.221 3.779 4 H 0.017 0.983 5 C -0.551 4.551 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.519 5.519 14 C 0.036 3.964 15 C 0.083 3.917 16 H 0.013 0.987 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.089 4.089 20 C -0.077 4.077 21 H 0.042 0.958 22 C 0.083 3.917 23 N -0.851 5.851 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.027 0.973 29 H 0.260 0.740 30 H 0.007 0.993 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.025 0.975 40 H 0.072 0.928 41 H 0.335 0.665 42 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 6.464 6.581 11.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.114 3.886 4 H 0.034 0.966 5 C -0.590 4.590 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.766 3.234 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.242 5.242 14 C -0.113 4.113 15 C -0.027 4.027 16 H 0.032 0.968 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.127 4.127 20 C -0.097 4.097 21 H 0.061 0.939 22 C -0.047 4.047 23 N -0.380 5.380 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.146 0.854 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.203 6.658 7.153 12.140 hybrid contribution 2.709 -0.821 -1.558 3.231 sum -4.494 5.838 5.595 9.250 Atomic orbital electron populations 1.21661 0.96242 0.99765 1.00556 1.21432 0.94511 0.98518 0.99953 1.19135 0.90889 0.91240 0.87385 0.96554 1.22048 0.94603 1.36742 1.05607 0.93508 1.25552 1.01441 0.95201 0.95586 1.69985 1.36166 1.38686 1.10085 0.85901 0.82123 0.78010 0.77327 1.20039 1.20924 1.20339 1.62596 1.55437 1.02356 1.03795 1.22261 0.95734 0.99444 0.93823 1.22208 0.95559 0.88671 0.96227 0.96838 1.22569 1.00208 0.97075 0.95678 1.22478 0.97407 0.95990 0.99831 1.22117 0.97172 0.97650 0.95719 1.21673 0.94687 0.95987 0.97327 0.93937 1.21863 0.90403 0.94538 0.97908 1.58874 1.16744 1.31066 1.31294 0.94894 0.94075 0.91832 0.92417 0.95394 0.93095 0.97421 0.90600 0.93089 0.90077 0.92606 0.89888 0.91880 0.91526 0.91669 0.95680 0.90963 0.85394 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 8.66 71.98 0.62 -4.20 16 2 C -0.11 -4.94 5.17 30.60 0.16 -4.79 16 3 C 0.22 10.60 0.97 44.17 0.04 10.64 16 4 H 0.02 0.90 5.70 -2.39 -0.01 0.89 16 5 C -0.55 -29.57 6.97 25.60 0.18 -29.39 16 6 H 0.05 2.55 6.06 -2.91 -0.02 2.53 16 7 C 0.02 1.20 5.30 84.66 0.45 1.65 16 8 N -0.91 -51.67 11.30 21.45 0.24 -51.43 16 9 Si 0.94 43.83 29.54 68.60 2.03 45.86 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.52 -20.72 2.50 -871.96 -2.18 -22.90 16 14 C 0.04 1.35 8.02 127.69 1.02 2.38 16 15 C 0.08 3.10 2.68 45.64 0.12 3.23 16 16 H 0.01 0.61 7.15 -2.39 -0.02 0.59 16 17 C -0.12 -3.49 5.27 31.67 0.17 -3.32 16 18 C -0.12 -2.96 6.91 31.88 0.22 -2.74 16 19 C -0.09 -2.42 6.08 31.67 0.19 -2.23 16 20 C -0.08 -2.59 2.97 -10.07 -0.03 -2.62 16 21 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 22 C 0.08 2.80 4.22 86.30 0.36 3.16 16 23 N -0.85 -23.79 9.32 -186.72 -1.74 -25.53 16 24 H 0.03 1.27 7.34 -2.39 -0.02 1.25 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.06 2.32 6.29 -2.39 -0.02 2.31 16 27 H 0.06 3.09 5.99 -2.38 -0.01 3.07 16 28 H 0.03 1.30 6.37 -2.39 -0.02 1.28 16 29 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 30 H 0.01 0.30 6.34 -2.39 -0.02 0.29 16 31 H 0.08 2.38 5.99 -2.39 -0.01 2.37 16 32 H 0.05 1.99 6.22 -2.38 -0.01 1.98 16 33 H 0.08 2.30 6.18 -2.39 -0.01 2.29 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.07 1.83 7.83 -2.39 -0.02 1.81 16 38 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.03 1.01 3.25 -2.39 -0.01 1.01 16 40 H 0.07 2.52 6.82 -2.39 -0.02 2.51 16 41 H 0.33 8.96 8.99 -89.69 -0.81 8.15 16 42 H 0.34 8.59 9.08 -89.70 -0.81 7.77 16 Total: -1.00 -56.91 299.98 1.26 -55.65 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.60 Total: 26.59 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 3.51 Total: -28.24 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -3.68 Total: -99.86 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -56.91 1.26 -55.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.386 kcal (2) G-P(sol) polarization free energy of solvation -56.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds