Wall clock time and date at job start Mon Mar 30 2020 03:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46921 * 2 1 4 4 H 1.09004 * 109.46765 * 175.66359 * 3 2 1 5 5 C 1.50702 * 109.46880 * 55.66567 * 3 2 1 6 6 H 1.07998 * 119.99944 * 239.99430 * 5 3 2 7 7 C 1.37877 * 119.99803 * 60.00211 * 5 3 2 8 8 N 1.31523 * 119.99872 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00291 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47059 * 269.99928 * 9 7 5 11 11 H 1.48500 * 109.47036 * 150.00197 * 9 7 5 12 12 H 1.48499 * 109.47195 * 29.99979 * 9 7 5 13 13 N 1.46898 * 109.47007 * 295.66644 * 3 2 1 14 14 C 1.46895 * 111.00141 * 274.30776 * 13 3 2 15 15 H 1.09001 * 109.47176 * 36.43987 * 14 13 3 16 16 C 1.53002 * 109.47136 * 276.44458 * 14 13 3 17 17 C 1.53002 * 109.46675 * 299.99659 * 16 14 13 18 18 C 1.52996 * 109.47361 * 299.99984 * 17 16 14 19 19 C 1.53000 * 109.47200 * 59.99956 * 18 17 16 20 20 C 1.52994 * 109.47175 * 300.00449 * 19 18 17 21 21 H 1.09002 * 109.47035 * 299.99430 * 20 19 18 22 22 C 1.53000 * 109.47350 * 179.97438 * 20 19 18 23 23 N 1.46904 * 109.47219 * 65.00025 * 22 20 19 24 24 H 1.08992 * 109.47089 * 305.00632 * 1 2 3 25 25 H 1.08994 * 109.47306 * 65.01010 * 1 2 3 26 26 H 1.09004 * 109.47066 * 185.00728 * 1 2 3 27 27 H 1.08994 * 109.47085 * 239.99937 * 2 1 3 28 28 H 1.08999 * 109.46853 * 120.00133 * 2 1 3 29 29 H 0.96995 * 119.99827 * 179.97438 * 8 7 5 30 30 H 1.00896 * 110.99892 * 38.26193 * 13 3 2 31 31 H 1.08993 * 109.47414 * 59.99403 * 16 14 13 32 32 H 1.08996 * 109.47552 * 180.02562 * 16 14 13 33 33 H 1.09002 * 109.47272 * 60.00349 * 17 16 14 34 34 H 1.09004 * 109.47455 * 180.02562 * 17 16 14 35 35 H 1.09006 * 109.47661 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.47225 * 300.00394 * 18 17 16 37 37 H 1.09004 * 109.47188 * 60.00042 * 19 18 17 38 38 H 1.08994 * 109.47490 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.47452 * 184.99800 * 22 20 19 40 40 H 1.09001 * 109.46975 * 304.99776 * 22 20 19 41 41 H 1.00896 * 110.99957 * 56.04009 * 23 22 20 42 42 H 1.00897 * 111.00061 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 0.0777 5 6 1.4518 2.1832 1.1733 6 1 0.8404 3.0580 1.0081 7 6 1.6945 1.7441 2.4575 8 7 1.1816 2.3908 3.4815 9 14 2.7517 0.2307 2.7432 10 1 1.8905 -0.9790 2.7580 11 1 3.4526 0.3554 4.0464 12 1 3.7522 0.1128 1.6523 13 7 1.6376 2.1041 -1.2483 14 6 2.6091 1.8438 -2.3190 15 1 2.9888 0.8263 -2.2256 16 6 3.7702 2.8337 -2.2058 17 6 3.2373 4.2619 -2.3370 18 6 2.5552 4.4290 -3.6962 19 6 1.3942 3.4390 -3.8094 20 6 1.9271 2.0109 -3.6782 21 1 2.6480 1.8176 -4.4727 22 6 0.7660 1.0209 -3.7908 23 7 0.1863 1.0971 -5.1385 24 1 -0.3633 0.5895 0.8417 25 1 -0.3633 0.4341 -0.9314 26 1 -0.3633 -1.0238 0.0897 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.3520 2.0817 4.3850 30 1 0.7098 1.8203 -1.5251 31 1 4.2561 2.7147 -1.2374 32 1 4.4909 2.6409 -3.0005 33 1 2.5164 4.4551 -1.5425 34 1 4.0645 4.9672 -2.2568 35 1 2.1759 5.4466 -3.7899 36 1 3.2761 4.2358 -4.4907 37 1 0.6732 3.6321 -3.0150 38 1 0.9080 3.5583 -4.7776 39 1 1.1313 0.0101 -3.6091 40 1 0.0035 1.2697 -3.0527 41 1 0.8888 0.9338 -5.8440 42 1 -0.5834 0.4524 -5.2380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084216736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:33 Heat of formation + Delta-G solvation = -17.621157 kcal Electronic energy + Delta-G solvation = -18980.753677 eV Core-core repulsion = 16380.601403 eV Total energy + Delta-G solvation = -2600.152274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.23924 -35.86091 -34.42903 -32.22172 -31.10968 -29.97347 -28.36220 -26.26197 -24.34871 -23.17688 -21.86281 -20.71586 -19.86136 -18.21477 -16.63200 -15.91311 -15.31636 -15.04890 -14.48730 -14.29050 -14.11156 -13.62961 -13.35433 -13.06513 -12.79176 -12.43382 -12.22530 -11.88107 -11.70244 -11.55939 -11.13147 -11.01899 -10.77517 -10.62134 -10.47901 -10.38506 -10.07422 -9.80429 -9.75401 -9.52183 -9.31045 -9.04180 -8.65694 -8.50441 -7.28436 -6.00966 -3.95893 3.26995 3.36883 3.39270 4.43441 4.54124 4.91833 5.01732 5.23558 5.25686 5.30475 5.52628 5.61686 5.68230 5.80421 5.85528 5.91486 5.97038 6.01100 6.02721 6.10027 6.18174 6.24838 6.31166 6.45197 6.54807 6.65230 6.68684 6.76380 6.80079 6.84175 6.89140 7.03927 7.10124 7.11296 7.27160 7.39462 7.79228 8.01587 8.44147 8.75959 9.11523 9.62910 11.12560 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.008312 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.142828 B = 3367.983786 C = 3875.730185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.185 3.815 4 H 0.032 0.968 5 C -0.485 4.485 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.879 3.121 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.271 1.271 13 N -0.661 5.661 14 C 0.089 3.911 15 H 0.028 0.972 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.097 4.097 20 C -0.082 4.082 21 H 0.062 0.938 22 C 0.060 3.940 23 N -0.846 5.846 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.262 0.738 30 H 0.331 0.669 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.077 0.923 41 H 0.335 0.665 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -2.686 -14.959 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.197 4.197 3 C 0.076 3.924 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.710 3.290 10 H -0.208 1.208 11 H -0.226 1.226 12 H -0.196 1.196 13 N -0.294 5.294 14 C -0.022 4.022 15 H 0.046 0.954 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.134 4.134 20 C -0.101 4.101 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.375 5.375 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.096 0.904 41 H 0.147 0.853 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.713 -1.308 -14.394 14.555 hybrid contribution 0.769 -3.063 0.072 3.159 sum 2.482 -4.371 -14.322 15.178 Atomic orbital electron populations 1.21650 0.95912 0.99502 1.02357 1.22501 0.97110 1.01419 0.98691 1.19719 0.95807 0.87870 0.89009 0.94980 1.20907 1.30959 1.12581 0.87933 0.90031 1.24893 0.95604 0.96534 0.96215 1.69884 1.45382 1.40290 0.98554 0.86993 0.81183 0.84037 0.76756 1.20829 1.22562 1.19626 1.60698 1.03816 1.62354 1.02512 1.21450 0.93979 0.96154 0.90611 0.95368 1.21458 0.96244 0.95586 1.00725 1.21391 0.99959 0.95541 0.97907 1.21496 0.97559 0.98650 0.97444 1.21348 0.97662 0.92635 1.01801 1.21274 0.95821 0.96080 0.96952 0.91980 1.21952 0.97422 0.96843 0.90860 1.58700 1.13973 1.60426 1.04394 0.90001 0.94255 0.95216 0.95175 0.93439 0.92834 0.84810 0.91914 0.93518 0.89535 0.93736 0.92826 0.93507 0.90979 0.92143 0.96049 0.90436 0.85280 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.40 37.16 0.35 -2.35 16 2 C -0.16 -3.35 5.21 -26.73 -0.14 -3.49 16 3 C 0.19 4.21 1.73 -68.86 -0.12 4.09 16 4 H 0.03 0.78 6.07 -51.93 -0.32 0.47 16 5 C -0.49 -13.17 7.87 -34.44 -0.27 -13.45 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 7 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.88 21.90 24.33 -169.99 -4.14 17.76 16 10 H -0.28 -6.87 6.91 56.52 0.39 -6.48 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 12 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 13 N -0.66 -12.75 4.53 -100.96 -0.46 -13.21 16 14 C 0.09 1.47 2.11 -67.72 -0.14 1.33 16 15 H 0.03 0.49 7.15 -51.93 -0.37 0.12 16 16 C -0.10 -1.65 5.50 -26.73 -0.15 -1.80 16 17 C -0.11 -1.74 5.77 -26.73 -0.15 -1.89 16 18 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 19 C -0.10 -1.36 4.93 -26.73 -0.13 -1.49 16 20 C -0.08 -1.13 2.11 -90.62 -0.19 -1.32 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 C 0.06 0.77 5.81 -3.82 -0.02 0.75 16 23 N -0.85 -9.06 9.08 -10.36 -0.09 -9.15 16 24 H 0.08 1.86 6.90 -51.93 -0.36 1.50 16 25 H 0.04 0.69 6.30 -51.93 -0.33 0.36 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.03 0.57 7.42 -51.93 -0.39 0.19 16 28 H 0.05 1.08 3.39 -51.93 -0.18 0.91 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.33 6.16 4.04 -39.29 -0.16 6.00 16 31 H 0.06 1.14 7.33 -51.93 -0.38 0.76 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.61 7.60 -51.93 -0.39 1.21 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.16 7.53 -51.93 -0.39 0.76 16 38 H 0.06 0.82 7.75 -51.93 -0.40 0.41 16 39 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 1.11 6.13 -51.93 -0.32 0.80 16 41 H 0.34 3.12 8.99 -39.29 -0.35 2.77 16 42 H 0.34 3.10 9.08 -39.29 -0.36 2.74 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -28.52 303.30 -7.82 -36.34 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.25 Total: 9.71 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.23 Total: -19.50 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.22 Total: -48.89 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.76 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.52 -7.82 -36.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084216736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.718 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds