Wall clock time and date at job start Mon Mar 30 2020 03:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46984 * 2 1 4 4 H 1.09002 * 109.47400 * 305.40587 * 3 2 1 5 5 C 1.50705 * 109.46758 * 185.41278 * 3 2 1 6 6 H 1.08001 * 119.99732 * 239.99965 * 5 3 2 7 7 C 1.37877 * 119.99885 * 59.99715 * 5 3 2 8 8 N 1.31513 * 120.00246 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99655 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47404 * 89.99965 * 9 7 5 11 11 H 1.48500 * 109.47151 * 210.00207 * 9 7 5 12 12 H 1.48498 * 109.47312 * 329.99887 * 9 7 5 13 13 N 1.46899 * 109.47599 * 65.41484 * 3 2 1 14 14 C 1.46901 * 110.99856 * 206.03819 * 13 3 2 15 15 H 1.09001 * 109.47036 * 327.23671 * 14 13 3 16 16 C 1.52998 * 109.47108 * 87.23596 * 14 13 3 17 17 C 1.53007 * 109.47200 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46944 * 299.99991 * 17 16 14 19 19 C 1.52998 * 109.47165 * 59.99987 * 18 17 16 20 20 C 1.52997 * 109.46928 * 207.23521 * 14 13 3 21 21 H 1.09001 * 109.47384 * 299.99937 * 20 14 13 22 22 C 1.52998 * 109.47165 * 60.00110 * 20 14 13 23 23 N 1.46907 * 109.47009 * 185.00139 * 22 20 14 24 24 H 1.08998 * 109.47321 * 300.20313 * 1 2 3 25 25 H 1.09009 * 109.46725 * 60.19844 * 1 2 3 26 26 H 1.08993 * 109.47475 * 180.19730 * 1 2 3 27 27 H 1.08998 * 109.47376 * 239.99470 * 2 1 3 28 28 H 1.08998 * 109.46649 * 119.99540 * 2 1 3 29 29 H 0.97000 * 119.99956 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99762 * 329.98594 * 13 3 2 31 31 H 1.09007 * 109.47179 * 299.99746 * 16 14 13 32 32 H 1.08996 * 109.47772 * 59.99873 * 16 14 13 33 33 H 1.09000 * 109.47029 * 179.97438 * 17 16 14 34 34 H 1.09001 * 109.46928 * 60.00085 * 17 16 14 35 35 H 1.08995 * 109.46940 * 299.99879 * 18 17 16 36 36 H 1.08994 * 109.46937 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47288 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47111 * 59.99659 * 19 18 17 39 39 H 1.08997 * 109.47102 * 304.99919 * 22 20 14 40 40 H 1.08995 * 109.47482 * 65.00065 * 22 20 14 41 41 H 1.00899 * 111.00231 * 56.04408 * 23 22 20 42 42 H 1.00902 * 110.99464 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5411 1.4445 -0.1340 6 1 4.1516 1.8872 0.6391 7 6 4.1349 0.8812 -1.2436 8 7 3.3914 0.3416 -2.1847 9 14 5.9955 0.8831 -1.4093 10 1 6.5486 -0.3504 -0.7946 11 1 6.3644 0.9280 -2.8471 12 1 6.5528 2.0734 -0.7180 13 7 1.6600 2.0963 1.2594 14 6 1.5560 3.5514 1.0866 15 1 2.2834 3.8821 0.3452 16 6 0.1460 3.9093 0.6128 17 6 0.0375 5.4249 0.4334 18 6 0.3182 6.1178 1.7683 19 6 1.7282 5.7599 2.2422 20 6 1.8369 4.2448 2.4212 21 1 1.1096 3.9141 3.1627 22 6 3.2470 3.8869 2.8951 23 7 3.4732 4.4540 4.2312 24 1 -0.3634 0.5170 0.8881 25 1 -0.3633 0.5108 -0.8919 26 1 -0.3634 -1.0276 0.0035 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8092 -0.0544 -2.9654 30 1 0.7995 1.7127 1.6206 31 1 -0.0541 3.4153 -0.3381 32 1 -0.5814 3.5786 1.3541 33 1 -0.9669 5.6798 0.0954 34 1 0.7649 5.7561 -0.3078 35 1 -0.4092 5.7866 2.5095 36 1 0.2413 7.1975 1.6405 37 1 1.9283 6.2539 3.1930 38 1 2.4556 6.0910 1.5009 39 1 3.3516 2.8028 2.9380 40 1 3.9790 4.2952 2.1984 41 1 2.7678 4.1408 4.8812 42 1 4.3986 4.2316 4.5664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084216738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:36 Heat of formation + Delta-G solvation = -32.845293 kcal Electronic energy + Delta-G solvation = -18678.655427 eV Core-core repulsion = 16077.842985 eV Total energy + Delta-G solvation = -2600.812442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.85341 -35.64604 -34.14190 -32.34889 -31.13790 -29.84992 -28.08851 -26.00394 -23.92213 -22.87495 -21.33278 -20.46922 -19.79477 -19.07601 -16.19279 -15.76354 -14.88493 -14.71142 -14.24434 -14.09042 -13.88267 -13.72235 -13.18838 -12.98501 -12.64176 -12.14465 -11.88655 -11.71947 -11.54496 -11.42408 -11.15055 -10.87572 -10.65644 -10.56119 -10.53428 -10.15303 -10.00660 -9.94144 -9.85592 -9.64120 -9.31906 -9.01755 -8.32954 -8.24836 -7.11030 -5.94629 -3.98318 3.32524 3.39262 3.42839 4.45793 4.91577 5.02209 5.14256 5.22735 5.33950 5.52078 5.59826 5.69595 5.86964 5.89753 5.97114 6.05226 6.11610 6.16951 6.17668 6.27332 6.39270 6.42235 6.44152 6.50201 6.57526 6.62409 6.73908 6.81309 6.86471 6.98587 7.12435 7.22133 7.50709 7.55926 7.75946 7.81020 7.95174 8.37223 8.43945 8.81433 9.09810 9.66559 11.10569 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.008395 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.161941 B = 3334.463410 C = 3970.157704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.099 3.901 15 H 0.080 0.920 16 C -0.144 4.144 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.106 4.106 20 C -0.065 4.065 21 H 0.056 0.944 22 C 0.070 3.930 23 N -0.856 5.856 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.039 0.961 29 H 0.258 0.742 30 H 0.315 0.685 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.332 0.668 42 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 6.915 7.601 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.311 5.311 14 C -0.012 4.012 15 H 0.098 0.902 16 C -0.183 4.183 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.144 4.144 20 C -0.084 4.084 21 H 0.074 0.926 22 C -0.060 4.060 23 N -0.384 5.384 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.116 0.884 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.143 0.857 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.744 7.529 7.283 11.499 hybrid contribution 0.220 -1.054 -0.480 1.179 sum -4.525 6.475 6.803 10.425 Atomic orbital electron populations 1.21877 0.99688 0.99432 0.99641 1.21775 0.91156 1.00629 1.02910 1.19136 0.95217 0.89745 0.84646 0.97997 1.21213 0.91315 1.36094 1.04128 0.92158 1.24951 0.97879 0.95814 0.95943 1.69870 1.34571 1.39599 1.09634 0.86601 0.86116 0.78324 0.76953 1.20881 1.21480 1.20022 1.60791 1.36103 1.01718 1.32447 1.21460 0.94473 0.89612 0.95696 0.90189 1.22262 0.99138 0.95755 1.01178 1.21483 1.00642 0.95769 0.97449 1.21546 0.97791 0.99132 0.97058 1.21487 0.95682 0.96099 1.01142 1.21028 0.96251 0.94105 0.97047 0.92572 1.21758 0.96681 0.98496 0.89071 1.58859 1.07059 1.67390 1.05093 0.94628 0.93944 0.94564 0.88360 0.94261 0.93174 0.86756 0.92162 0.92856 0.92984 0.92103 0.92645 0.92815 0.91428 0.92537 0.92840 0.91794 0.85718 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.75 37.16 0.36 -2.50 16 2 C -0.13 -2.93 5.35 -26.73 -0.14 -3.07 16 3 C 0.22 5.30 1.83 -68.86 -0.13 5.17 16 4 H 0.00 0.06 7.28 -51.93 -0.38 -0.31 16 5 C -0.49 -13.15 8.56 -34.44 -0.29 -13.45 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.35 11.29 55.43 0.63 -24.73 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -13.73 5.20 -100.95 -0.53 -14.26 16 14 C 0.10 1.79 1.71 -67.71 -0.12 1.68 16 15 H 0.08 1.70 7.65 -51.93 -0.40 1.30 16 16 C -0.14 -2.32 5.16 -26.73 -0.14 -2.46 16 17 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 18 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 19 C -0.11 -1.51 5.09 -26.75 -0.14 -1.65 16 20 C -0.06 -1.01 2.04 -90.65 -0.19 -1.20 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 C 0.07 1.15 6.09 -3.82 -0.02 1.12 16 23 N -0.86 -11.51 9.08 -10.37 -0.09 -11.60 16 24 H 0.03 0.61 6.44 -51.93 -0.33 0.28 16 25 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.31 5.96 6.19 -39.29 -0.24 5.72 16 31 H 0.06 1.07 7.61 -51.93 -0.40 0.68 16 32 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.94 7.75 -51.93 -0.40 0.54 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 1.00 7.45 -51.93 -0.39 0.61 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.33 4.03 8.99 -39.29 -0.35 3.68 16 42 H 0.33 4.06 9.08 -39.29 -0.36 3.71 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -26.99 319.22 -9.17 -36.15 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -7.75 Total: 11.60 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -1.21 Total: -18.42 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.01 Total: -50.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.99 -9.17 -36.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084216738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.309 kcal (2) G-P(sol) polarization free energy of solvation -26.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds