Wall clock time and date at job start Mon Mar 30 2020 03:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46984 * 2 1 4 4 H 1.09002 * 109.47400 * 305.40587 * 3 2 1 5 5 C 1.50705 * 109.46758 * 185.41278 * 3 2 1 6 6 H 1.08001 * 119.99732 * 239.99965 * 5 3 2 7 7 C 1.37877 * 119.99885 * 59.99715 * 5 3 2 8 8 N 1.31513 * 120.00246 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99655 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47404 * 89.99965 * 9 7 5 11 11 H 1.48500 * 109.47151 * 210.00207 * 9 7 5 12 12 H 1.48498 * 109.47312 * 329.99887 * 9 7 5 13 13 N 1.46899 * 109.47599 * 65.41484 * 3 2 1 14 14 C 1.46901 * 110.99856 * 206.03819 * 13 3 2 15 15 H 1.09001 * 109.47036 * 327.23671 * 14 13 3 16 16 C 1.52998 * 109.47108 * 87.23596 * 14 13 3 17 17 C 1.53007 * 109.47200 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46944 * 299.99991 * 17 16 14 19 19 C 1.52998 * 109.47165 * 59.99987 * 18 17 16 20 20 C 1.52997 * 109.46928 * 207.23521 * 14 13 3 21 21 H 1.09001 * 109.47384 * 299.99937 * 20 14 13 22 22 C 1.52998 * 109.47165 * 60.00110 * 20 14 13 23 23 N 1.46907 * 109.47009 * 185.00139 * 22 20 14 24 24 H 1.08998 * 109.47321 * 300.20313 * 1 2 3 25 25 H 1.09009 * 109.46725 * 60.19844 * 1 2 3 26 26 H 1.08993 * 109.47475 * 180.19730 * 1 2 3 27 27 H 1.08998 * 109.47376 * 239.99470 * 2 1 3 28 28 H 1.08998 * 109.46649 * 119.99540 * 2 1 3 29 29 H 0.97000 * 119.99956 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99762 * 329.98594 * 13 3 2 31 31 H 1.09007 * 109.47179 * 299.99746 * 16 14 13 32 32 H 1.08996 * 109.47772 * 59.99873 * 16 14 13 33 33 H 1.09000 * 109.47029 * 179.97438 * 17 16 14 34 34 H 1.09001 * 109.46928 * 60.00085 * 17 16 14 35 35 H 1.08995 * 109.46940 * 299.99879 * 18 17 16 36 36 H 1.08994 * 109.46937 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47288 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47111 * 59.99659 * 19 18 17 39 39 H 1.08997 * 109.47102 * 304.99919 * 22 20 14 40 40 H 1.08995 * 109.47482 * 65.00065 * 22 20 14 41 41 H 1.00899 * 111.00231 * 56.04408 * 23 22 20 42 42 H 1.00902 * 110.99464 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5411 1.4445 -0.1340 6 1 4.1516 1.8872 0.6391 7 6 4.1349 0.8812 -1.2436 8 7 3.3914 0.3416 -2.1847 9 14 5.9955 0.8831 -1.4093 10 1 6.5486 -0.3504 -0.7946 11 1 6.3644 0.9280 -2.8471 12 1 6.5528 2.0734 -0.7180 13 7 1.6600 2.0963 1.2594 14 6 1.5560 3.5514 1.0866 15 1 2.2834 3.8821 0.3452 16 6 0.1460 3.9093 0.6128 17 6 0.0375 5.4249 0.4334 18 6 0.3182 6.1178 1.7683 19 6 1.7282 5.7599 2.2422 20 6 1.8369 4.2448 2.4212 21 1 1.1096 3.9141 3.1627 22 6 3.2470 3.8869 2.8951 23 7 3.4732 4.4540 4.2312 24 1 -0.3634 0.5170 0.8881 25 1 -0.3633 0.5108 -0.8919 26 1 -0.3634 -1.0276 0.0035 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8092 -0.0544 -2.9654 30 1 0.7995 1.7127 1.6206 31 1 -0.0541 3.4153 -0.3381 32 1 -0.5814 3.5786 1.3541 33 1 -0.9669 5.6798 0.0954 34 1 0.7649 5.7561 -0.3078 35 1 -0.4092 5.7866 2.5095 36 1 0.2413 7.1975 1.6405 37 1 1.9283 6.2539 3.1930 38 1 2.4556 6.0910 1.5009 39 1 3.3516 2.8028 2.9380 40 1 3.9790 4.2952 2.1984 41 1 2.7678 4.1408 4.8812 42 1 4.3986 4.2316 4.5664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084216738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:35 Heat of formation + Delta-G solvation = -50.318329 kcal Electronic energy + Delta-G solvation = -18679.413115 eV Core-core repulsion = 16077.842985 eV Total energy + Delta-G solvation = -2601.570130 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.23910 -37.36713 -35.36567 -34.25534 -32.81249 -31.05735 -29.66823 -27.84843 -25.22115 -24.68215 -22.73625 -21.72284 -21.52728 -20.53090 -18.28564 -17.07703 -16.77853 -16.04753 -15.81389 -15.49563 -15.23881 -15.06795 -14.69470 -14.42924 -14.35187 -13.73260 -13.31756 -13.13511 -13.10321 -12.95914 -12.76743 -12.61591 -12.51825 -12.00596 -11.93480 -11.77825 -11.58690 -11.52935 -11.33229 -11.23779 -10.88225 -10.80564 -10.41633 -9.46577 -8.82249 -8.05136 -6.16189 1.38345 1.39520 1.49111 2.42892 3.19566 3.61814 3.68650 3.91366 4.03473 4.25183 4.30924 4.42285 4.51428 4.57680 4.60421 4.63883 4.70164 4.72590 4.79418 4.88876 4.95596 5.07480 5.17851 5.21447 5.24695 5.28611 5.32202 5.37726 5.41762 5.45031 5.54353 5.65196 5.68681 5.79673 5.93890 6.32452 6.40264 6.58895 6.72720 6.98839 7.08253 7.52657 8.97460 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.008395 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.161941 B = 3334.463410 C = 3970.157704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.230 3.770 4 H -0.033 1.033 5 C -0.502 4.502 6 H 0.048 0.952 7 C 0.008 3.992 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.678 5.678 14 C 0.101 3.899 15 H 0.039 0.961 16 C -0.138 4.138 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.100 4.100 20 C -0.056 4.056 21 H 0.070 0.930 22 C 0.079 3.921 23 N -0.846 5.846 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.258 0.742 30 H 0.325 0.675 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.027 0.973 40 H 0.039 0.961 41 H 0.344 0.656 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 7.864 9.274 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.122 3.878 4 H -0.015 1.015 5 C -0.541 4.541 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.308 5.308 14 C -0.010 4.010 15 H 0.057 0.943 16 C -0.177 4.177 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.075 4.075 21 H 0.088 0.912 22 C -0.051 4.051 23 N -0.376 5.376 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.144 0.856 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.156 0.844 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.748 8.487 8.981 13.628 hybrid contribution 0.544 -1.334 -0.982 1.744 sum -5.204 7.153 7.999 11.926 Atomic orbital electron populations 1.21732 0.96339 1.01026 1.00337 1.21601 0.94170 0.99312 1.00982 1.18846 0.93623 0.90291 0.85066 1.01520 1.21476 0.92972 1.35789 1.03890 0.93336 1.25638 1.01823 0.95688 0.95791 1.70000 1.35985 1.40178 1.09942 0.85697 0.81475 0.78361 0.76929 1.20272 1.21097 1.19831 1.60688 1.36837 1.02953 1.30314 1.21428 0.94897 0.88352 0.96310 0.94297 1.22165 0.97789 0.97434 1.00325 1.21477 1.01469 0.94015 0.98181 1.21515 0.96800 1.00220 0.96305 1.21436 0.96566 0.94564 1.01285 1.20941 0.95942 0.95102 0.95538 0.91198 1.21517 0.96634 0.96685 0.90310 1.58780 1.08113 1.66724 1.03972 0.92399 0.94679 0.92534 0.91653 0.94682 0.93252 0.85634 0.94516 0.91003 0.90947 0.93513 0.91152 0.90852 0.90349 0.94100 0.95514 0.94216 0.84374 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.75 71.98 0.70 -4.42 16 2 C -0.12 -5.76 5.35 30.59 0.16 -5.59 16 3 C 0.23 11.45 1.83 44.17 0.08 11.53 16 4 H -0.03 -1.84 7.28 -2.39 -0.02 -1.86 16 5 C -0.50 -28.01 8.56 25.60 0.22 -27.79 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 7 C 0.01 0.47 5.29 84.65 0.45 0.92 16 8 N -0.92 -53.57 11.29 21.45 0.24 -53.33 16 9 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.68 -27.62 5.20 -473.31 -2.46 -30.09 16 14 C 0.10 3.70 1.71 44.91 0.08 3.78 16 15 H 0.04 1.74 7.65 -2.39 -0.02 1.72 16 16 C -0.14 -4.33 5.16 30.60 0.16 -4.17 16 17 C -0.11 -2.98 5.92 30.60 0.18 -2.80 16 18 C -0.11 -2.52 5.92 30.59 0.18 -2.34 16 19 C -0.10 -2.67 5.09 30.58 0.16 -2.52 16 20 C -0.06 -1.69 2.04 -10.81 -0.02 -1.71 16 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 22 C 0.08 2.59 6.09 86.30 0.53 3.12 16 23 N -0.85 -21.34 9.08 -186.72 -1.69 -23.03 16 24 H 0.06 1.89 6.44 -2.39 -0.02 1.87 16 25 H 0.03 1.34 8.14 -2.38 -0.02 1.33 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 3.54 5.94 -2.39 -0.01 3.53 16 28 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.33 11.99 6.19 -89.69 -0.56 11.43 16 31 H 0.04 1.31 7.61 -2.38 -0.02 1.29 16 32 H 0.07 1.99 8.13 -2.39 -0.02 1.98 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.95 7.75 -2.39 -0.02 1.94 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.03 1.01 7.45 -2.39 -0.02 0.99 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.34 7.49 8.99 -89.69 -0.81 6.68 16 42 H 0.34 7.83 9.08 -89.69 -0.81 7.01 16 Total: -1.00 -59.86 319.22 -0.20 -60.06 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -1.18 Total: 31.45 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 2.87 Total: -32.00 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -3.92 Total: -106.45 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -59.86 -0.20 -60.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084216738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.743 kcal (2) G-P(sol) polarization free energy of solvation -59.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds