Wall clock time and date at job start Mon Mar 30 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 N 1.46901 * 109.46937 * 179.12481 * 3 2 1 5 5 C 1.46899 * 110.99998 * 291.23200 * 4 3 2 6 6 C 1.50700 * 109.47344 * 296.84356 * 5 4 3 7 7 H 1.08001 * 119.99864 * 4.23514 * 6 5 4 8 8 C 1.37877 * 120.00381 * 184.23838 * 6 5 4 9 9 N 1.31515 * 119.99668 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00084 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47215 * 60.00218 * 10 8 6 12 12 H 1.48502 * 109.47053 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47397 * 300.00096 * 10 8 6 14 14 C 1.46899 * 111.00178 * 167.27730 * 4 3 2 15 15 C 1.53001 * 109.47403 * 179.97438 * 14 4 3 16 16 C 1.52997 * 109.47139 * 180.02562 * 15 14 4 17 17 C 1.52995 * 109.47327 * 299.99934 * 16 15 14 18 18 N 1.46897 * 109.47334 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.46957 * 59.99954 * 17 16 15 20 20 C 1.52998 * 109.47096 * 300.00345 * 14 4 3 21 21 H 1.08995 * 109.47194 * 59.99693 * 1 2 3 22 22 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47028 * 300.00377 * 1 2 3 24 24 H 1.09003 * 109.47028 * 239.99623 * 2 1 3 25 25 H 1.09004 * 109.47093 * 120.00039 * 2 1 3 26 26 H 1.09000 * 109.47221 * 59.12582 * 3 2 1 27 27 H 1.08997 * 109.47352 * 299.12631 * 3 2 1 28 28 H 1.09006 * 109.47520 * 56.84333 * 5 4 3 29 29 H 1.09006 * 109.47341 * 176.84165 * 5 4 3 30 30 H 0.97000 * 119.99507 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.46886 * 60.00138 * 14 4 3 32 32 H 1.08998 * 109.47141 * 59.99836 * 15 14 4 33 33 H 1.08999 * 109.46989 * 300.00222 * 15 14 4 34 34 H 1.09002 * 109.46865 * 180.02562 * 16 15 14 35 35 H 1.09004 * 109.47024 * 60.00256 * 16 15 14 36 36 H 1.08999 * 109.47578 * 300.00525 * 17 16 15 37 37 H 1.00899 * 110.99844 * 180.02562 * 18 17 16 38 38 H 1.00899 * 111.00292 * 303.95650 * 18 17 16 39 39 H 1.08998 * 109.47141 * 60.00331 * 19 17 16 40 40 H 1.09001 * 109.47482 * 179.97438 * 19 17 16 41 41 H 1.09004 * 109.47084 * 299.99672 * 20 14 4 42 42 H 1.08994 * 109.47248 * 59.99211 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0212 5 6 4.0168 0.9524 1.3094 6 6 3.5820 1.8865 2.4091 7 1 2.9313 2.7188 2.1848 8 6 4.0150 1.6788 3.7016 9 7 4.8070 0.6651 3.9748 10 14 3.4765 2.8372 5.0645 11 1 1.9957 2.8175 5.1747 12 1 4.0750 2.3997 6.3512 13 1 3.9312 4.2156 4.7511 14 6 4.0397 2.7787 -0.2801 15 6 5.5689 2.7391 -0.2482 16 6 6.1217 4.1309 -0.5613 17 6 5.6517 4.5657 -1.9509 18 7 6.1820 5.9023 -2.2512 19 6 4.1225 4.6053 -1.9827 20 6 3.5691 3.2131 -1.6695 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6640 1.9608 0.8820 27 1 1.6896 1.9518 -0.8977 28 1 3.6195 -0.0444 1.5013 29 1 5.1056 0.9097 1.2783 30 1 5.1119 0.5192 4.8840 31 1 3.6795 3.4890 0.4642 32 1 5.9295 2.0287 -0.9921 33 1 5.9038 2.4298 0.7418 34 1 7.2112 4.1025 -0.5391 35 1 5.7611 4.8410 0.1829 36 1 6.0122 3.8556 -2.6951 37 1 5.8850 6.2123 -3.1643 38 1 5.9145 6.5657 -1.5397 39 1 3.7619 5.3153 -1.2385 40 1 3.7876 4.9154 -2.9725 41 1 3.9293 2.5028 -2.4137 42 1 2.4797 3.2414 -1.6918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085871209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:03 Heat of formation + Delta-G solvation = -24.034829 kcal Electronic energy + Delta-G solvation = -18543.557104 eV Core-core repulsion = 15943.126712 eV Total energy + Delta-G solvation = -2600.430392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.97236 -36.45425 -33.25574 -32.73845 -31.08581 -30.46277 -27.22952 -26.52411 -24.31683 -22.80742 -21.70024 -20.74781 -19.68232 -19.04849 -16.32138 -15.65975 -15.56441 -14.89199 -14.47994 -14.27127 -13.78541 -13.60636 -13.43340 -12.97634 -12.49000 -12.36052 -12.07323 -11.93207 -11.38151 -11.21373 -11.01960 -10.99943 -10.82607 -10.68673 -10.56591 -10.46791 -10.29340 -9.90905 -9.81637 -9.75143 -9.64604 -9.20405 -8.54225 -8.37728 -7.08896 -6.00090 -4.08470 3.27869 3.33388 3.35360 4.41415 4.61655 4.92944 5.04954 5.08357 5.29834 5.49560 5.59060 5.62179 5.69296 5.75518 5.84485 5.92102 5.97730 6.00951 6.07033 6.23204 6.26806 6.37122 6.42275 6.45353 6.50968 6.57750 6.62235 6.69593 6.94683 6.94912 7.02745 7.08223 7.23791 7.36029 7.49515 7.58903 7.94742 8.15174 8.34265 8.40360 9.01877 9.57460 11.04396 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.008951 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.350432 B = 3127.434477 C = 4266.179759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.057 3.943 4 N -0.540 5.540 5 C 0.183 3.817 6 C -0.543 4.543 7 H 0.053 0.947 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.884 3.116 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.097 3.903 15 C -0.108 4.108 16 C -0.107 4.107 17 C 0.090 3.910 18 N -0.848 5.848 19 C -0.148 4.148 20 C -0.111 4.111 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.029 0.971 29 H 0.038 0.962 30 H 0.262 0.738 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.335 0.665 38 H 0.337 0.663 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 5.480 -10.619 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.071 4.071 4 N -0.263 5.263 5 C 0.057 3.943 6 C -0.583 4.583 7 H 0.071 0.929 8 C -0.136 4.136 9 N -0.529 5.529 10 Si 0.712 3.288 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.204 1.204 14 C -0.011 4.011 15 C -0.146 4.146 16 C -0.145 4.145 17 C -0.021 4.021 18 N -0.375 5.375 19 C -0.188 4.188 20 C -0.150 4.150 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.559 4.716 -10.774 11.864 hybrid contribution -1.683 1.507 1.570 2.751 sum -3.241 6.223 -9.204 11.574 Atomic orbital electron populations 1.21721 0.96960 1.00716 1.01055 1.21456 0.93981 0.97751 1.02276 1.21999 0.89619 0.96073 0.99427 1.62538 1.06404 1.22418 1.34959 1.19827 0.96308 0.95279 0.82857 1.21669 1.30144 1.12758 0.93679 0.92856 1.24921 0.94965 0.95210 0.98546 1.69928 1.33914 1.28895 1.20209 0.86787 0.78898 0.81460 0.81657 1.20396 1.21213 1.20350 1.21310 0.94493 0.91346 0.93989 1.21535 0.94986 0.95118 1.02955 1.21516 1.00468 0.97733 0.94828 1.21525 0.91644 0.90523 0.98391 1.58998 1.67067 1.04473 1.06972 1.22356 0.97436 0.98526 1.00446 1.21633 0.99754 0.95211 0.98376 0.93588 0.93375 0.93014 0.92520 0.91267 0.94178 0.93028 0.95304 0.94409 0.92834 0.93951 0.92308 0.89970 0.91732 0.92444 0.90402 0.85348 0.85089 0.92459 0.92851 0.91763 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.12 -2.08 5.94 -26.73 -0.16 -2.24 16 3 C 0.06 1.10 4.64 -3.82 -0.02 1.09 16 4 N -0.54 -11.31 4.56 -228.08 -1.04 -12.35 16 5 C 0.18 4.58 4.50 -4.98 -0.02 4.56 16 6 C -0.54 -14.63 7.52 -34.44 -0.26 -14.89 16 7 H 0.05 1.44 5.88 -52.49 -0.31 1.13 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 10 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.10 1.85 1.57 -67.71 -0.11 1.74 16 15 C -0.11 -1.98 4.84 -26.73 -0.13 -2.11 16 16 C -0.11 -1.67 5.46 -26.74 -0.15 -1.82 16 17 C 0.09 1.20 3.25 -67.72 -0.22 0.98 16 18 N -0.85 -9.82 9.25 -4.67 -0.04 -9.86 16 19 C -0.15 -1.95 5.49 -26.70 -0.15 -2.09 16 20 C -0.11 -1.72 5.02 -26.71 -0.13 -1.86 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.41 6.54 -51.93 -0.34 1.07 16 26 H 0.04 0.87 6.37 -51.93 -0.33 0.54 16 27 H 0.05 0.89 5.73 -51.93 -0.30 0.60 16 28 H 0.03 0.78 6.43 -51.93 -0.33 0.45 16 29 H 0.04 1.02 6.19 -51.93 -0.32 0.70 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.04 0.91 6.73 -51.93 -0.35 0.57 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.78 6.33 -51.93 -0.33 1.45 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.33 3.23 9.04 -39.29 -0.36 2.88 16 38 H 0.34 3.67 8.98 -39.29 -0.35 3.32 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.87 6.15 -51.93 -0.32 0.56 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -27.92 313.79 -9.13 -37.05 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.42 Total: 5.93 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -1.07 Total: -16.70 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.35 Total: -47.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.92 -9.13 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085871209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.017 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds