Wall clock time and date at job start Mon Mar 30 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 N 1.46901 * 109.46937 * 179.12481 * 3 2 1 5 5 C 1.46899 * 110.99998 * 291.23200 * 4 3 2 6 6 C 1.50700 * 109.47344 * 296.84356 * 5 4 3 7 7 H 1.08001 * 119.99864 * 4.23514 * 6 5 4 8 8 C 1.37877 * 120.00381 * 184.23838 * 6 5 4 9 9 N 1.31515 * 119.99668 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00084 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47215 * 60.00218 * 10 8 6 12 12 H 1.48502 * 109.47053 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47397 * 300.00096 * 10 8 6 14 14 C 1.46899 * 111.00178 * 167.27730 * 4 3 2 15 15 C 1.53001 * 109.47403 * 179.97438 * 14 4 3 16 16 C 1.52997 * 109.47139 * 180.02562 * 15 14 4 17 17 C 1.52995 * 109.47327 * 299.99934 * 16 15 14 18 18 N 1.46897 * 109.47334 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.46957 * 59.99954 * 17 16 15 20 20 C 1.52998 * 109.47096 * 300.00345 * 14 4 3 21 21 H 1.08995 * 109.47194 * 59.99693 * 1 2 3 22 22 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47028 * 300.00377 * 1 2 3 24 24 H 1.09003 * 109.47028 * 239.99623 * 2 1 3 25 25 H 1.09004 * 109.47093 * 120.00039 * 2 1 3 26 26 H 1.09000 * 109.47221 * 59.12582 * 3 2 1 27 27 H 1.08997 * 109.47352 * 299.12631 * 3 2 1 28 28 H 1.09006 * 109.47520 * 56.84333 * 5 4 3 29 29 H 1.09006 * 109.47341 * 176.84165 * 5 4 3 30 30 H 0.97000 * 119.99507 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.46886 * 60.00138 * 14 4 3 32 32 H 1.08998 * 109.47141 * 59.99836 * 15 14 4 33 33 H 1.08999 * 109.46989 * 300.00222 * 15 14 4 34 34 H 1.09002 * 109.46865 * 180.02562 * 16 15 14 35 35 H 1.09004 * 109.47024 * 60.00256 * 16 15 14 36 36 H 1.08999 * 109.47578 * 300.00525 * 17 16 15 37 37 H 1.00899 * 110.99844 * 180.02562 * 18 17 16 38 38 H 1.00899 * 111.00292 * 303.95650 * 18 17 16 39 39 H 1.08998 * 109.47141 * 60.00331 * 19 17 16 40 40 H 1.09001 * 109.47482 * 179.97438 * 19 17 16 41 41 H 1.09004 * 109.47084 * 299.99672 * 20 14 4 42 42 H 1.08994 * 109.47248 * 59.99211 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0212 5 6 4.0168 0.9524 1.3094 6 6 3.5820 1.8865 2.4091 7 1 2.9313 2.7188 2.1848 8 6 4.0150 1.6788 3.7016 9 7 4.8070 0.6651 3.9748 10 14 3.4765 2.8372 5.0645 11 1 1.9957 2.8175 5.1747 12 1 4.0750 2.3997 6.3512 13 1 3.9312 4.2156 4.7511 14 6 4.0397 2.7787 -0.2801 15 6 5.5689 2.7391 -0.2482 16 6 6.1217 4.1309 -0.5613 17 6 5.6517 4.5657 -1.9509 18 7 6.1820 5.9023 -2.2512 19 6 4.1225 4.6053 -1.9827 20 6 3.5691 3.2131 -1.6695 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6640 1.9608 0.8820 27 1 1.6896 1.9518 -0.8977 28 1 3.6195 -0.0444 1.5013 29 1 5.1056 0.9097 1.2783 30 1 5.1119 0.5192 4.8840 31 1 3.6795 3.4890 0.4642 32 1 5.9295 2.0287 -0.9921 33 1 5.9038 2.4298 0.7418 34 1 7.2112 4.1025 -0.5391 35 1 5.7611 4.8410 0.1829 36 1 6.0122 3.8556 -2.6951 37 1 5.8850 6.2123 -3.1643 38 1 5.9145 6.5657 -1.5397 39 1 3.7619 5.3153 -1.2385 40 1 3.7876 4.9154 -2.9725 41 1 3.9293 2.5028 -2.4137 42 1 2.4797 3.2414 -1.6918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085871209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:03 Heat of formation + Delta-G solvation = -42.993755 kcal Electronic energy + Delta-G solvation = -18544.379224 eV Core-core repulsion = 15943.126712 eV Total energy + Delta-G solvation = -2601.252513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41633 -37.90772 -34.85496 -34.47475 -32.55873 -31.78934 -28.99591 -27.93976 -26.07346 -24.35471 -23.13876 -22.07092 -21.10789 -20.66719 -18.32746 -17.15465 -16.76776 -16.68033 -15.92105 -15.81903 -15.26957 -14.98585 -14.83476 -14.27896 -14.19010 -13.91696 -13.48726 -13.32590 -12.99395 -12.83970 -12.69182 -12.62313 -12.22754 -12.19818 -12.02747 -11.95875 -11.90451 -11.75289 -11.57312 -11.27409 -11.20503 -10.74014 -10.54486 -9.51463 -8.94171 -8.12615 -6.31188 1.33282 1.33900 1.41906 2.35797 3.11060 3.29217 3.71404 3.83186 3.85061 4.20627 4.27520 4.32898 4.37993 4.43072 4.52793 4.59495 4.65127 4.66912 4.74843 4.88393 4.93577 5.02018 5.05651 5.14130 5.22382 5.23981 5.27864 5.29283 5.35954 5.40396 5.45381 5.49730 5.54153 5.59285 5.81002 6.12465 6.28449 6.34685 6.67615 6.68094 6.90725 7.38824 8.88388 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.008951 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.350432 B = 3127.434477 C = 4266.179759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.059 3.941 4 N -0.539 5.539 5 C 0.200 3.800 6 C -0.545 4.545 7 H 0.049 0.951 8 C 0.014 3.986 9 N -0.925 5.925 10 Si 0.947 3.053 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.098 3.902 15 C -0.102 4.102 16 C -0.101 4.101 17 C 0.100 3.900 18 N -0.848 5.848 19 C -0.140 4.140 20 C -0.102 4.102 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.033 0.967 26 H 0.013 0.987 27 H 0.081 0.919 28 H 0.003 0.997 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.013 0.987 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.350 0.650 38 H 0.342 0.658 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 7.086 -12.421 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.069 4.069 4 N -0.262 5.262 5 C 0.073 3.927 6 C -0.585 4.585 7 H 0.068 0.932 8 C -0.186 4.186 9 N -0.565 5.565 10 Si 0.773 3.227 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.197 1.197 14 C -0.011 4.011 15 C -0.140 4.140 16 C -0.139 4.139 17 C -0.012 4.012 18 N -0.377 5.377 19 C -0.179 4.179 20 C -0.141 4.141 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.099 0.901 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.673 6.340 -12.599 14.355 hybrid contribution -1.314 0.986 2.094 2.661 sum -3.987 7.326 -10.505 13.413 Atomic orbital electron populations 1.21662 0.94206 1.02086 1.01747 1.21422 0.96386 0.96362 1.00994 1.22080 0.88224 0.97138 0.99475 1.62522 1.07700 1.23824 1.32130 1.19429 0.94581 0.93948 0.84725 1.21871 1.29585 1.12609 0.94393 0.93243 1.25718 0.95089 0.96756 1.01003 1.70051 1.35139 1.30585 1.20745 0.85774 0.78679 0.79516 0.78755 1.19699 1.20677 1.19677 1.21391 0.94617 0.89373 0.95716 1.21418 0.94938 0.97115 1.00532 1.21426 1.00371 0.95564 0.96565 1.21335 0.91796 0.91640 0.96401 1.58912 1.66993 1.03720 1.08095 1.22313 0.97005 0.96696 1.01930 1.21551 1.00156 0.96853 0.95502 0.91272 0.91742 0.93877 0.91508 0.94803 0.96868 0.90090 0.97928 0.96979 0.92771 0.96874 0.91940 0.94368 0.91638 0.93366 0.90083 0.83601 0.84507 0.92828 0.89893 0.91098 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.17 16 2 C -0.11 -4.03 5.94 30.59 0.18 -3.85 16 3 C 0.06 2.26 4.64 86.30 0.40 2.66 16 4 N -0.54 -23.08 4.56 -875.51 -3.99 -27.08 16 5 C 0.20 10.57 4.50 85.56 0.38 10.95 16 6 C -0.55 -30.51 7.52 25.60 0.19 -30.32 16 7 H 0.05 2.76 5.88 -2.91 -0.02 2.74 16 8 C 0.01 0.77 5.46 84.65 0.46 1.23 16 9 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 10 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 C 0.10 3.73 1.57 44.92 0.07 3.80 16 15 C -0.10 -3.84 4.84 30.59 0.15 -3.69 16 16 C -0.10 -3.11 5.46 30.59 0.17 -2.94 16 17 C 0.10 2.42 3.25 44.91 0.15 2.56 16 18 N -0.85 -17.15 9.25 -168.69 -1.56 -18.71 16 19 C -0.14 -3.24 5.49 30.61 0.17 -3.08 16 20 C -0.10 -2.93 5.02 30.61 0.15 -2.78 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 23 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.03 1.42 6.54 -2.38 -0.02 1.41 16 26 H 0.01 0.57 6.37 -2.39 -0.02 0.56 16 27 H 0.08 2.64 5.73 -2.39 -0.01 2.63 16 28 H 0.00 0.15 6.43 -2.38 -0.02 0.14 16 29 H 0.01 0.70 6.19 -2.38 -0.01 0.69 16 30 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 31 H 0.01 0.58 6.73 -2.38 -0.02 0.57 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 1.76 6.33 -2.39 -0.02 1.74 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.35 5.46 9.04 -89.69 -0.81 4.65 16 38 H 0.34 6.54 8.98 -89.70 -0.81 5.73 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.06 1.75 6.15 -2.39 -0.01 1.74 16 Total: -1.00 -62.33 313.79 -0.67 -63.00 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.62 Total: 20.18 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 3.19 Total: -28.62 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -5.27 Total: -101.24 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -62.33 -0.67 -63.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085871209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.002 kcal (2) G-P(sol) polarization free energy of solvation -62.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds