Wall clock time and date at job start Mon Mar 30 2020 04:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 N 1.46900 * 109.47001 * 119.99592 * 2 1 3 5 5 C 1.46904 * 111.00009 * 308.55767 * 4 2 1 6 6 C 1.50699 * 109.47128 * 202.83486 * 5 4 2 7 7 H 1.08003 * 120.00119 * 5.48241 * 6 5 4 8 8 C 1.37880 * 120.00287 * 185.48055 * 6 5 4 9 9 N 1.31516 * 119.99697 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00151 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47621 * 270.00103 * 10 8 6 12 12 H 1.48501 * 109.47450 * 30.00134 * 10 8 6 13 13 H 1.48499 * 109.47238 * 150.00017 * 10 8 6 14 14 C 1.46901 * 111.00169 * 72.51156 * 4 2 1 15 15 H 1.08999 * 109.47213 * 303.78635 * 14 4 2 16 16 C 1.52998 * 109.46888 * 63.78160 * 14 4 2 17 17 C 1.53003 * 109.47355 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47125 * 300.00276 * 17 16 14 19 19 C 1.52998 * 109.47230 * 59.99647 * 18 17 16 20 20 H 1.08998 * 109.47443 * 179.97438 * 19 18 17 21 21 N 1.46907 * 109.47260 * 59.99934 * 19 18 17 22 22 C 1.53000 * 109.47490 * 183.78374 * 14 4 2 23 23 H 1.08995 * 109.47109 * 300.00018 * 1 2 3 24 24 H 1.09001 * 109.46571 * 60.00463 * 1 2 3 25 25 H 1.08996 * 109.46669 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47530 * 239.99658 * 2 1 3 27 27 H 1.09001 * 109.47243 * 174.04269 * 3 2 1 28 28 H 1.08999 * 109.47023 * 294.04496 * 3 2 1 29 29 H 1.09007 * 109.46994 * 54.04335 * 3 2 1 30 30 H 1.09000 * 109.46820 * 82.84022 * 5 4 2 31 31 H 1.08994 * 109.46998 * 322.83599 * 5 4 2 32 32 H 0.96992 * 120.00221 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.47276 * 300.00220 * 16 14 4 34 34 H 1.09001 * 109.47312 * 60.00359 * 16 14 4 35 35 H 1.09001 * 109.46750 * 59.99853 * 17 16 14 36 36 H 1.09000 * 109.47332 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46964 * 179.97438 * 18 17 16 38 38 H 1.08999 * 109.47105 * 299.99979 * 18 17 16 39 39 H 1.00899 * 110.99236 * 59.99782 * 21 19 18 40 40 H 1.00892 * 110.99857 * 183.95512 * 21 19 18 41 41 H 1.09001 * 109.46962 * 299.99795 * 22 14 4 42 42 H 1.08997 * 109.46975 * 59.99576 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.3892 -0.1542 2.4123 6 6 2.2633 -0.4459 3.6047 7 1 3.2340 -0.8984 3.4649 8 6 1.8241 -0.1352 4.8741 9 7 0.6419 0.4154 5.0444 10 14 2.9073 -0.4975 6.3521 11 1 2.6175 -1.8642 6.8553 12 1 4.3350 -0.4094 5.9530 13 1 2.6308 0.4932 7.4232 14 6 1.8066 -2.1421 1.0944 15 1 0.7500 -2.3421 0.9164 16 6 2.6333 -2.6961 -0.0677 17 6 2.4109 -4.2059 -0.1776 18 6 2.8450 -4.8815 1.1247 19 6 2.0183 -4.3275 2.2868 20 1 2.3271 -4.8091 3.2146 21 7 0.5941 -4.5964 2.0467 22 6 2.2410 -2.8172 2.3969 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1248 1.4444 0.1067 28 1 1.7664 1.9246 -0.9385 29 1 1.5922 1.9862 0.8319 30 1 0.4147 -0.6217 2.5532 31 1 1.2636 0.9235 2.3088 32 1 0.3327 0.6337 5.9374 33 1 2.3237 -2.2151 -0.9956 34 1 3.6899 -2.4962 0.1103 35 1 1.3543 -4.4055 -0.3558 36 1 3.0003 -4.6007 -1.0052 37 1 2.6861 -5.9570 1.0466 38 1 3.9016 -4.6819 1.3030 39 1 0.4213 -5.5875 1.9702 40 1 0.0217 -4.1840 2.7679 41 1 3.2976 -2.6173 2.5748 42 1 1.6521 -2.4225 3.2247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086432384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:58 Heat of formation + Delta-G solvation = -10.405436 kcal Electronic energy + Delta-G solvation = -19128.710063 eV Core-core repulsion = 16528.870686 eV Total energy + Delta-G solvation = -2599.839377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.06264 -36.50489 -32.92341 -32.40174 -31.10383 -28.33922 -27.87318 -26.53219 -26.07654 -22.63789 -21.46149 -21.13261 -18.77464 -18.21598 -16.57762 -15.50383 -15.14543 -14.56281 -14.52808 -14.00299 -13.73871 -13.36728 -13.33500 -12.79336 -12.15420 -12.10600 -12.01375 -11.70848 -11.42164 -11.31201 -11.06293 -10.91319 -10.74623 -10.57601 -10.54751 -10.44483 -10.17209 -9.91301 -9.73032 -9.62426 -9.06183 -8.96880 -8.31574 -8.18344 -6.99922 -5.95792 -3.91742 3.31652 3.39379 3.43556 4.45825 4.89051 4.98332 5.27449 5.34264 5.38232 5.50757 5.64508 5.81557 5.85834 5.95141 5.99448 6.05312 6.11062 6.15932 6.18804 6.35679 6.36640 6.42584 6.45951 6.53702 6.57974 6.70445 6.81431 6.87391 6.92346 6.94168 7.19347 7.36953 7.50798 7.56205 7.61617 7.85086 7.93635 8.27658 8.43503 8.70941 9.13257 9.66647 11.13888 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.010880 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.491336 B = 2573.025588 C = 3624.777767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.075 3.925 3 C -0.138 4.138 4 N -0.533 5.533 5 C 0.192 3.808 6 C -0.490 4.490 7 H 0.065 0.935 8 C 0.051 3.949 9 N -0.900 5.900 10 Si 0.888 3.112 11 H -0.283 1.283 12 H -0.274 1.274 13 H -0.289 1.289 14 C 0.107 3.893 15 H 0.042 0.958 16 C -0.110 4.110 17 C -0.106 4.106 18 C -0.109 4.109 19 C 0.085 3.915 20 H 0.026 0.974 21 N -0.841 5.841 22 C -0.105 4.105 23 H 0.063 0.937 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.058 0.942 30 H -0.002 1.002 31 H 0.026 0.974 32 H 0.259 0.741 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.327 0.673 40 H 0.342 0.658 41 H 0.065 0.935 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 -7.322 -8.408 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.035 4.035 3 C -0.195 4.195 4 N -0.257 5.257 5 C 0.067 3.933 6 C -0.529 4.529 7 H 0.083 0.917 8 C -0.149 4.149 9 N -0.540 5.540 10 Si 0.717 3.283 11 H -0.210 1.210 12 H -0.199 1.199 13 H -0.215 1.215 14 C -0.001 4.001 15 H 0.060 0.940 16 C -0.148 4.148 17 C -0.144 4.144 18 C -0.147 4.147 19 C -0.026 4.026 20 H 0.043 0.957 21 N -0.371 5.371 22 C -0.142 4.142 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.015 0.985 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.083 0.917 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.778 -6.729 -8.892 11.292 hybrid contribution -0.355 -0.821 1.813 2.022 sum 1.423 -7.551 -7.079 10.447 Atomic orbital electron populations 1.22464 0.98685 1.01402 1.01559 1.21630 0.91987 0.95196 0.94655 1.21792 1.01630 0.95795 1.00314 1.62379 1.58613 1.02303 1.02387 1.19725 0.93040 0.94915 0.85662 1.21313 1.02869 1.38591 0.90162 0.91661 1.24955 0.95152 0.96006 0.98816 1.69958 1.18514 1.43424 1.22122 0.86645 0.81144 0.77790 0.82752 1.20984 1.19858 1.21461 1.21238 0.97091 0.87706 0.94060 0.93990 1.21619 1.00585 0.94390 0.98240 1.21353 1.01539 0.95609 0.95870 1.21545 0.99122 0.98299 0.95742 1.21522 0.87812 0.98222 0.95076 0.95651 1.58753 1.06472 1.17238 1.54613 1.22029 1.02699 0.90125 0.99371 0.91842 0.93747 0.93098 0.91546 0.92343 0.93909 0.92325 0.98463 0.95631 0.93178 0.93102 0.92252 0.91271 0.93605 0.93401 0.92093 0.86148 0.84473 0.91667 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.53 37.16 0.32 -2.95 16 2 C 0.07 1.37 2.77 -67.71 -0.19 1.19 16 3 C -0.14 -2.42 9.10 37.16 0.34 -2.08 16 4 N -0.53 -11.29 4.28 -220.15 -0.94 -12.23 16 5 C 0.19 4.81 2.88 -4.97 -0.01 4.80 16 6 C -0.49 -13.16 6.22 -34.44 -0.21 -13.38 16 7 H 0.07 1.76 6.30 -52.48 -0.33 1.43 16 8 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 9 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 10 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.11 2.06 1.56 -67.71 -0.11 1.96 16 15 H 0.04 0.86 6.06 -51.93 -0.31 0.55 16 16 C -0.11 -1.82 5.11 -26.73 -0.14 -1.96 16 17 C -0.11 -1.52 5.77 -26.73 -0.15 -1.67 16 18 C -0.11 -1.55 5.61 -26.73 -0.15 -1.70 16 19 C 0.09 1.37 3.57 -67.68 -0.24 1.13 16 20 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 21 N -0.84 -12.34 7.72 -4.64 -0.04 -12.38 16 22 C -0.10 -2.06 3.46 -26.70 -0.09 -2.15 16 23 H 0.06 1.27 6.67 -51.93 -0.35 0.93 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.92 6.72 -51.93 -0.35 0.57 16 26 H 0.07 1.14 5.90 -51.93 -0.31 0.83 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.13 6.57 -51.92 -0.34 0.79 16 30 H 0.00 -0.07 7.43 -51.93 -0.39 -0.45 16 31 H 0.03 0.69 5.86 -51.93 -0.30 0.39 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.05 0.81 6.25 -51.93 -0.32 0.48 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.03 7.60 -51.93 -0.39 0.64 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.33 3.99 9.04 -39.29 -0.36 3.64 16 40 H 0.34 5.25 8.99 -39.30 -0.35 4.90 16 41 H 0.06 1.37 7.10 -51.93 -0.37 1.00 16 42 H 0.10 2.37 5.50 -51.93 -0.29 2.09 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -27.86 305.60 -8.67 -36.54 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.28 Total: 8.06 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.74 Total: -15.51 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.24 Total: -50.04 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.86 -8.67 -36.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.131 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds