Wall clock time and date at job start Mon Mar 30 2020 04:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 N 1.46900 * 109.47001 * 119.99592 * 2 1 3 5 5 C 1.46904 * 111.00009 * 308.55767 * 4 2 1 6 6 C 1.50699 * 109.47128 * 202.83486 * 5 4 2 7 7 H 1.08003 * 120.00119 * 5.48241 * 6 5 4 8 8 C 1.37880 * 120.00287 * 185.48055 * 6 5 4 9 9 N 1.31516 * 119.99697 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00151 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47621 * 270.00103 * 10 8 6 12 12 H 1.48501 * 109.47450 * 30.00134 * 10 8 6 13 13 H 1.48499 * 109.47238 * 150.00017 * 10 8 6 14 14 C 1.46901 * 111.00169 * 72.51156 * 4 2 1 15 15 H 1.08999 * 109.47213 * 303.78635 * 14 4 2 16 16 C 1.52998 * 109.46888 * 63.78160 * 14 4 2 17 17 C 1.53003 * 109.47355 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47125 * 300.00276 * 17 16 14 19 19 C 1.52998 * 109.47230 * 59.99647 * 18 17 16 20 20 H 1.08998 * 109.47443 * 179.97438 * 19 18 17 21 21 N 1.46907 * 109.47260 * 59.99934 * 19 18 17 22 22 C 1.53000 * 109.47490 * 183.78374 * 14 4 2 23 23 H 1.08995 * 109.47109 * 300.00018 * 1 2 3 24 24 H 1.09001 * 109.46571 * 60.00463 * 1 2 3 25 25 H 1.08996 * 109.46669 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47530 * 239.99658 * 2 1 3 27 27 H 1.09001 * 109.47243 * 174.04269 * 3 2 1 28 28 H 1.08999 * 109.47023 * 294.04496 * 3 2 1 29 29 H 1.09007 * 109.46994 * 54.04335 * 3 2 1 30 30 H 1.09000 * 109.46820 * 82.84022 * 5 4 2 31 31 H 1.08994 * 109.46998 * 322.83599 * 5 4 2 32 32 H 0.96992 * 120.00221 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.47276 * 300.00220 * 16 14 4 34 34 H 1.09001 * 109.47312 * 60.00359 * 16 14 4 35 35 H 1.09001 * 109.46750 * 59.99853 * 17 16 14 36 36 H 1.09000 * 109.47332 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46964 * 179.97438 * 18 17 16 38 38 H 1.08999 * 109.47105 * 299.99979 * 18 17 16 39 39 H 1.00899 * 110.99236 * 59.99782 * 21 19 18 40 40 H 1.00892 * 110.99857 * 183.95512 * 21 19 18 41 41 H 1.09001 * 109.46962 * 299.99795 * 22 14 4 42 42 H 1.08997 * 109.46975 * 59.99576 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.3892 -0.1542 2.4123 6 6 2.2633 -0.4459 3.6047 7 1 3.2340 -0.8984 3.4649 8 6 1.8241 -0.1352 4.8741 9 7 0.6419 0.4154 5.0444 10 14 2.9073 -0.4975 6.3521 11 1 2.6175 -1.8642 6.8553 12 1 4.3350 -0.4094 5.9530 13 1 2.6308 0.4932 7.4232 14 6 1.8066 -2.1421 1.0944 15 1 0.7500 -2.3421 0.9164 16 6 2.6333 -2.6961 -0.0677 17 6 2.4109 -4.2059 -0.1776 18 6 2.8450 -4.8815 1.1247 19 6 2.0183 -4.3275 2.2868 20 1 2.3271 -4.8091 3.2146 21 7 0.5941 -4.5964 2.0467 22 6 2.2410 -2.8172 2.3969 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1248 1.4444 0.1067 28 1 1.7664 1.9246 -0.9385 29 1 1.5922 1.9862 0.8319 30 1 0.4147 -0.6217 2.5532 31 1 1.2636 0.9235 2.3088 32 1 0.3327 0.6337 5.9374 33 1 2.3237 -2.2151 -0.9956 34 1 3.6899 -2.4962 0.1103 35 1 1.3543 -4.4055 -0.3558 36 1 3.0003 -4.6007 -1.0052 37 1 2.6861 -5.9570 1.0466 38 1 3.9016 -4.6819 1.3030 39 1 0.4213 -5.5875 1.9702 40 1 0.0217 -4.1840 2.7679 41 1 3.2976 -2.6173 2.5748 42 1 1.6521 -2.4225 3.2247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086432384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:58 Heat of formation + Delta-G solvation = -29.237662 kcal Electronic energy + Delta-G solvation = -19129.526690 eV Core-core repulsion = 16528.870686 eV Total energy + Delta-G solvation = -2600.656004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57397 -37.96288 -34.94798 -33.71048 -32.69768 -29.99403 -29.31379 -28.00231 -27.83688 -24.52527 -22.88059 -22.55642 -20.22977 -19.79134 -18.50236 -17.01942 -16.58009 -16.48946 -16.04438 -15.33119 -15.29307 -14.90367 -14.75224 -14.24550 -14.05519 -13.83029 -13.46204 -13.11808 -12.89890 -12.86966 -12.73120 -12.56949 -12.39799 -12.23547 -12.04663 -12.00808 -11.71662 -11.56008 -11.36332 -11.01219 -10.91391 -10.69869 -10.37605 -9.42658 -8.76086 -8.09609 -6.12199 1.38514 1.40417 1.50933 2.43106 3.20366 3.36848 3.71344 3.98846 4.06764 4.12740 4.31940 4.34540 4.48688 4.55195 4.57912 4.70336 4.76676 4.78878 4.87775 4.94031 4.97923 5.00715 5.06679 5.16629 5.24707 5.27723 5.35474 5.39825 5.43293 5.47294 5.51288 5.56544 5.78776 5.79372 5.83986 6.24042 6.32388 6.60939 6.73923 6.87384 7.00245 7.50336 8.99578 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.010880 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.491336 B = 2573.025588 C = 3624.777767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.069 3.931 3 C -0.132 4.132 4 N -0.541 5.541 5 C 0.217 3.783 6 C -0.490 4.490 7 H 0.061 0.939 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.951 3.049 11 H -0.276 1.276 12 H -0.267 1.267 13 H -0.287 1.287 14 C 0.111 3.889 15 H 0.029 0.971 16 C -0.104 4.104 17 C -0.099 4.099 18 C -0.105 4.105 19 C 0.089 3.911 20 H 0.025 0.975 21 N -0.840 5.840 22 C -0.098 4.098 23 H 0.030 0.970 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.030 0.970 30 H -0.037 1.037 31 H 0.000 1.000 32 H 0.259 0.741 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.345 0.655 40 H 0.336 0.664 41 H 0.047 0.953 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 -8.904 -10.001 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.040 4.040 3 C -0.190 4.190 4 N -0.265 5.265 5 C 0.090 3.910 6 C -0.529 4.529 7 H 0.079 0.921 8 C -0.196 4.196 9 N -0.578 5.578 10 Si 0.777 3.223 11 H -0.202 1.202 12 H -0.192 1.192 13 H -0.213 1.213 14 C 0.002 3.998 15 H 0.047 0.953 16 C -0.142 4.142 17 C -0.137 4.137 18 C -0.143 4.143 19 C -0.022 4.022 20 H 0.043 0.957 21 N -0.371 5.371 22 C -0.136 4.136 23 H 0.049 0.951 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.049 0.951 30 H -0.019 1.019 31 H 0.018 0.982 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.148 0.852 41 H 0.066 0.934 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.899 -8.334 -10.508 13.722 hybrid contribution -0.728 -0.322 2.254 2.391 sum 2.171 -8.657 -8.254 12.157 Atomic orbital electron populations 1.22350 0.98293 1.01054 1.01430 1.21817 0.92358 0.95708 0.94099 1.21755 1.01060 0.95186 1.00999 1.62365 1.58256 1.03801 1.02068 1.19263 0.91365 0.92985 0.87347 1.21508 1.02650 1.37701 0.91029 0.92078 1.25714 0.96334 0.95973 1.01629 1.70088 1.20238 1.44840 1.22654 0.85644 0.79554 0.77776 0.79280 1.20169 1.19182 1.21317 1.21256 0.96936 0.86423 0.95142 0.95325 1.21567 0.99465 0.96199 0.96949 1.21320 1.01867 0.93706 0.96832 1.21530 0.98631 0.99694 0.94437 1.21407 0.89018 0.95393 0.96416 0.95703 1.58700 1.05551 1.18640 1.54237 1.21794 1.00508 0.93114 0.98169 0.95097 0.90629 0.93542 0.89085 0.92723 0.90448 0.95089 1.01888 0.98245 0.93236 0.92075 0.92733 0.91574 0.90941 0.90820 0.91904 0.84141 0.85192 0.93412 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.14 8.53 71.98 0.61 -5.52 16 2 C 0.07 2.48 2.77 44.92 0.12 2.60 16 3 C -0.13 -4.56 9.10 71.98 0.65 -3.91 16 4 N -0.54 -23.27 4.28 -850.41 -3.64 -26.91 16 5 C 0.22 11.42 2.88 85.56 0.25 11.66 16 6 C -0.49 -27.27 6.22 25.60 0.16 -27.12 16 7 H 0.06 3.39 6.30 -2.91 -0.02 3.37 16 8 C 0.00 0.02 5.46 84.66 0.46 0.48 16 9 N -0.94 -56.52 13.29 21.45 0.28 -56.23 16 10 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 14 C 0.11 4.23 1.56 44.91 0.07 4.30 16 15 H 0.03 1.19 6.06 -2.39 -0.01 1.17 16 16 C -0.10 -3.20 5.11 30.59 0.16 -3.04 16 17 C -0.10 -2.52 5.77 30.60 0.18 -2.34 16 18 C -0.11 -2.66 5.61 30.59 0.17 -2.49 16 19 C 0.09 2.77 3.57 44.93 0.16 2.93 16 20 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 21 N -0.84 -23.81 7.72 -168.60 -1.30 -25.11 16 22 C -0.10 -3.92 3.46 30.61 0.11 -3.81 16 23 H 0.03 1.28 6.67 -2.39 -0.02 1.26 16 24 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 25 H 0.05 1.66 6.72 -2.39 -0.02 1.65 16 26 H 0.09 2.88 5.90 -2.39 -0.01 2.86 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.03 1.22 6.57 -2.38 -0.02 1.20 16 30 H -0.04 -2.15 7.43 -2.39 -0.02 -2.17 16 31 H 0.00 -0.03 5.86 -2.39 -0.01 -0.04 16 32 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 33 H 0.06 1.75 6.25 -2.38 -0.01 1.74 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.75 7.60 -2.39 -0.02 1.74 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.35 7.69 9.04 -89.70 -0.81 6.88 16 40 H 0.34 10.40 8.99 -89.70 -0.81 9.59 16 41 H 0.05 2.03 7.10 -2.39 -0.02 2.02 16 42 H 0.06 2.83 5.50 -2.39 -0.01 2.82 16 Total: -1.00 -62.23 305.60 -0.14 -62.37 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.61 Total: 25.38 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 3.10 Total: -26.25 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -4.66 Total: -108.25 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.23 -0.14 -62.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.129 kcal (2) G-P(sol) polarization free energy of solvation -62.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds