Wall clock time and date at job start Mon Mar 30 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46749 * 2 1 4 4 N 1.46900 * 109.47475 * 119.99459 * 2 1 3 5 5 C 1.46905 * 110.99791 * 94.29079 * 4 2 1 6 6 C 1.50701 * 109.46561 * 66.05054 * 5 4 2 7 7 H 1.07995 * 120.00253 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99794 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99885 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99965 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47283 * 90.00248 * 10 8 6 12 12 H 1.48506 * 109.46823 * 210.00012 * 10 8 6 13 13 H 1.48499 * 109.47118 * 329.99834 * 10 8 6 14 14 C 1.46903 * 110.99956 * 330.34221 * 4 2 1 15 15 C 1.52998 * 109.47081 * 296.81991 * 14 4 2 16 16 C 1.53006 * 109.47044 * 179.97438 * 15 14 4 17 17 C 1.53000 * 109.46803 * 60.00329 * 16 15 14 18 18 N 1.46895 * 109.47287 * 59.99782 * 17 16 15 19 19 C 1.53005 * 109.46939 * 299.99419 * 17 16 15 20 20 C 1.52999 * 109.46990 * 176.81824 * 14 4 2 21 21 H 1.08998 * 109.47241 * 306.56103 * 1 2 3 22 22 H 1.08993 * 109.47122 * 66.56467 * 1 2 3 23 23 H 1.08998 * 109.46681 * 186.56236 * 1 2 3 24 24 H 1.08999 * 109.47572 * 239.99981 * 2 1 3 25 25 H 1.09001 * 109.47081 * 175.87610 * 3 2 1 26 26 H 1.09002 * 109.46963 * 295.87577 * 3 2 1 27 27 H 1.09000 * 109.47277 * 55.87415 * 3 2 1 28 28 H 1.08997 * 109.47089 * 186.04714 * 5 4 2 29 29 H 1.08995 * 109.47189 * 306.05457 * 5 4 2 30 30 H 0.97000 * 120.00479 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.46892 * 56.81820 * 14 4 2 32 32 H 1.08993 * 109.47159 * 300.00103 * 15 14 4 33 33 H 1.08999 * 109.47039 * 60.00376 * 15 14 4 34 34 H 1.08996 * 109.47157 * 299.99678 * 16 15 14 35 35 H 1.09006 * 109.46859 * 179.97438 * 16 15 14 36 36 H 1.09004 * 109.46972 * 179.97438 * 17 16 15 37 37 H 1.00901 * 111.00422 * 60.00361 * 18 17 16 38 38 H 1.00902 * 110.99950 * 183.95628 * 18 17 16 39 39 H 1.08996 * 109.47139 * 300.00723 * 19 17 16 40 40 H 1.08999 * 109.46926 * 179.97438 * 19 17 16 41 41 H 1.08999 * 109.47416 * 300.00074 * 20 14 4 42 42 H 1.09002 * 109.46808 * 60.00285 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6924 1.1995 5 6 2.2920 -2.1079 0.9160 6 6 3.4410 -2.2139 -0.0535 7 1 3.9206 -1.3194 -0.4223 8 6 3.8798 -3.4530 -0.4694 9 7 3.2960 -4.5424 -0.0198 10 14 5.3044 -3.5846 -1.6705 11 1 6.5818 -3.6606 -0.9170 12 1 5.1437 -4.8079 -2.4969 13 1 5.3202 -2.3899 -2.5524 14 6 1.0717 -0.5514 2.3127 15 6 0.9494 0.9251 2.6946 16 6 -0.0385 1.0720 3.8536 17 6 0.4656 0.2739 5.0577 18 7 1.7807 0.7842 5.4675 19 6 0.5878 -1.2027 4.6758 20 6 1.5764 -1.3495 3.5165 21 1 -0.3633 0.6121 0.8254 22 1 -0.3633 0.4087 -0.9428 23 1 -0.3632 -1.0209 0.1174 24 1 1.8934 -0.5138 -0.8899 25 1 3.1275 1.4435 0.0739 26 1 1.7382 1.9346 -0.9247 27 1 1.6175 1.9773 0.8507 28 1 2.5498 -2.6209 1.8424 29 1 1.4054 -2.5682 0.4802 30 1 3.6045 -5.4142 -0.3127 31 1 0.0957 -0.9301 2.0089 32 1 1.9253 1.3038 2.9983 33 1 0.5899 1.4936 1.8369 34 1 -1.0143 0.6935 3.5495 35 1 -0.1253 2.1239 4.1260 36 1 -0.2380 0.3789 5.8836 37 1 1.7265 1.7583 5.7249 38 1 2.1643 0.2322 6.2200 39 1 -0.3880 -1.5812 4.3716 40 1 0.9474 -1.7712 5.5334 41 1 1.6635 -2.4014 3.2445 42 1 2.5523 -0.9707 3.8203 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086432390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:06 Heat of formation + Delta-G solvation = 0.647531 kcal Electronic energy + Delta-G solvation = -18888.126563 eV Core-core repulsion = 16288.766479 eV Total energy + Delta-G solvation = -2599.360085 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.37232 -36.61978 -32.87203 -32.20909 -30.97666 -29.67667 -27.78867 -26.60782 -25.57416 -22.70923 -21.60680 -21.20894 -19.05896 -18.35163 -16.15054 -15.64132 -15.60788 -14.97070 -14.64632 -14.36598 -13.91838 -13.32875 -13.10171 -12.86068 -12.39711 -11.96969 -11.83985 -11.76068 -11.47416 -11.35029 -11.23481 -11.05980 -10.75042 -10.64773 -10.58943 -10.50735 -10.23013 -9.99480 -9.88274 -9.30826 -9.19518 -8.96026 -8.43802 -8.31277 -6.97246 -5.93769 -3.93370 3.37342 3.43000 3.46999 4.49197 4.60849 4.96151 4.98315 5.13610 5.34894 5.41512 5.64270 5.68047 5.77570 5.83945 5.88107 5.92198 5.96253 6.03825 6.10444 6.18326 6.26883 6.29224 6.35394 6.43903 6.54210 6.61453 6.73070 6.82658 6.90074 6.99778 7.10597 7.17968 7.29113 7.51635 7.53905 7.56835 7.94810 8.28091 8.43941 8.75157 9.15456 9.69938 11.16949 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027200 B = 0.007210 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.179378 B = 3882.418156 C = 4384.743068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.079 3.921 3 C -0.145 4.145 4 N -0.525 5.525 5 C 0.188 3.812 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.274 1.274 14 C 0.090 3.910 15 C -0.112 4.112 16 C -0.111 4.111 17 C 0.094 3.906 18 N -0.836 5.836 19 C -0.111 4.111 20 C -0.107 4.107 21 H 0.059 0.941 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.038 0.962 29 H -0.015 1.015 30 H 0.259 0.741 31 H 0.027 0.973 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.023 0.977 37 H 0.335 0.665 38 H 0.337 0.663 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 10.442 8.164 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.030 4.030 3 C -0.203 4.203 4 N -0.248 5.248 5 C 0.063 3.937 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.147 4.147 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.199 1.199 14 C -0.019 4.019 15 C -0.149 4.149 16 C -0.150 4.150 17 C -0.017 4.017 18 N -0.366 5.366 19 C -0.150 4.150 20 C -0.145 4.145 21 H 0.078 0.922 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.003 0.997 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.224 10.270 7.530 14.175 hybrid contribution -0.515 -0.530 0.053 0.741 sum -6.739 9.740 7.583 14.064 Atomic orbital electron populations 1.22559 0.99015 1.01350 1.00922 1.21566 0.91196 0.94840 0.95383 1.22112 1.01876 0.96301 1.00007 1.62276 1.41762 1.16804 1.04003 1.19821 0.95078 0.82027 0.96760 1.21218 1.15535 0.92150 1.25089 0.91989 1.24972 0.97051 0.95819 0.96838 1.69962 1.41695 0.97556 1.44839 0.86554 0.82790 0.77315 0.81076 1.20726 1.21476 1.19932 1.21503 0.93902 0.94541 0.91944 1.21891 0.99984 0.96945 0.96077 1.21582 0.98881 0.98659 0.95876 1.21302 0.89200 0.95577 0.95659 1.58636 1.25466 1.06672 1.45828 1.21594 1.00056 0.94284 0.99032 1.21573 0.99413 1.00242 0.93243 0.92232 0.93621 0.93091 0.89629 0.92343 0.94222 0.92323 0.94400 0.99674 0.93123 0.95494 0.90178 0.91466 0.92373 0.92860 0.95928 0.85339 0.85015 0.92280 0.92667 0.91710 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 7.81 37.16 0.29 -2.82 16 2 C 0.08 1.57 2.57 -67.71 -0.17 1.40 16 3 C -0.15 -2.48 9.12 37.16 0.34 -2.14 16 4 N -0.52 -11.40 4.26 -220.14 -0.94 -12.34 16 5 C 0.19 4.95 4.36 -4.97 -0.02 4.93 16 6 C -0.50 -14.29 8.12 -34.44 -0.28 -14.57 16 7 H 0.06 1.76 7.54 -52.49 -0.40 1.37 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 10 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.09 1.65 1.42 -67.71 -0.10 1.55 16 15 C -0.11 -1.72 3.45 -26.73 -0.09 -1.81 16 16 C -0.11 -1.41 5.61 -26.73 -0.15 -1.56 16 17 C 0.09 1.15 3.57 -67.71 -0.24 0.90 16 18 N -0.84 -9.65 7.72 -4.67 -0.04 -9.68 16 19 C -0.11 -1.57 5.57 -26.70 -0.15 -1.72 16 20 C -0.11 -1.93 4.61 -26.70 -0.12 -2.05 16 21 H 0.06 0.93 4.87 -51.93 -0.25 0.68 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.96 7.41 -51.93 -0.39 0.57 16 24 H 0.09 1.95 6.68 -51.93 -0.35 1.60 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.91 4.73 -51.93 -0.25 0.67 16 28 H 0.04 1.06 5.63 -51.93 -0.29 0.77 16 29 H -0.01 -0.41 8.04 -51.93 -0.42 -0.83 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.03 0.52 6.00 -51.93 -0.31 0.21 16 32 H 0.08 1.35 7.60 -51.93 -0.39 0.96 16 33 H 0.07 1.02 3.47 -51.93 -0.18 0.84 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.33 3.25 9.04 -39.29 -0.36 2.89 16 38 H 0.34 3.50 8.99 -39.29 -0.35 3.15 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.33 6.11 -51.93 -0.32 1.02 16 42 H 0.08 1.54 7.61 -51.93 -0.39 1.15 16 LS Contribution 304.96 15.07 4.60 4.60 Total: -1.00 -29.76 304.96 -8.62 -38.38 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.16 Total: 4.80 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -0.80 Total: -16.43 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.24 Total: -48.40 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.76 -8.62 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.023 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds