Wall clock time and date at job start Mon Mar 30 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46749 * 2 1 4 4 N 1.46900 * 109.47475 * 119.99459 * 2 1 3 5 5 C 1.46905 * 110.99791 * 94.29079 * 4 2 1 6 6 C 1.50701 * 109.46561 * 66.05054 * 5 4 2 7 7 H 1.07995 * 120.00253 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99794 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99885 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99965 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47283 * 90.00248 * 10 8 6 12 12 H 1.48506 * 109.46823 * 210.00012 * 10 8 6 13 13 H 1.48499 * 109.47118 * 329.99834 * 10 8 6 14 14 C 1.46903 * 110.99956 * 330.34221 * 4 2 1 15 15 C 1.52998 * 109.47081 * 296.81991 * 14 4 2 16 16 C 1.53006 * 109.47044 * 179.97438 * 15 14 4 17 17 C 1.53000 * 109.46803 * 60.00329 * 16 15 14 18 18 N 1.46895 * 109.47287 * 59.99782 * 17 16 15 19 19 C 1.53005 * 109.46939 * 299.99419 * 17 16 15 20 20 C 1.52999 * 109.46990 * 176.81824 * 14 4 2 21 21 H 1.08998 * 109.47241 * 306.56103 * 1 2 3 22 22 H 1.08993 * 109.47122 * 66.56467 * 1 2 3 23 23 H 1.08998 * 109.46681 * 186.56236 * 1 2 3 24 24 H 1.08999 * 109.47572 * 239.99981 * 2 1 3 25 25 H 1.09001 * 109.47081 * 175.87610 * 3 2 1 26 26 H 1.09002 * 109.46963 * 295.87577 * 3 2 1 27 27 H 1.09000 * 109.47277 * 55.87415 * 3 2 1 28 28 H 1.08997 * 109.47089 * 186.04714 * 5 4 2 29 29 H 1.08995 * 109.47189 * 306.05457 * 5 4 2 30 30 H 0.97000 * 120.00479 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.46892 * 56.81820 * 14 4 2 32 32 H 1.08993 * 109.47159 * 300.00103 * 15 14 4 33 33 H 1.08999 * 109.47039 * 60.00376 * 15 14 4 34 34 H 1.08996 * 109.47157 * 299.99678 * 16 15 14 35 35 H 1.09006 * 109.46859 * 179.97438 * 16 15 14 36 36 H 1.09004 * 109.46972 * 179.97438 * 17 16 15 37 37 H 1.00901 * 111.00422 * 60.00361 * 18 17 16 38 38 H 1.00902 * 110.99950 * 183.95628 * 18 17 16 39 39 H 1.08996 * 109.47139 * 300.00723 * 19 17 16 40 40 H 1.08999 * 109.46926 * 179.97438 * 19 17 16 41 41 H 1.08999 * 109.47416 * 300.00074 * 20 14 4 42 42 H 1.09002 * 109.46808 * 60.00285 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6924 1.1995 5 6 2.2920 -2.1079 0.9160 6 6 3.4410 -2.2139 -0.0535 7 1 3.9206 -1.3194 -0.4223 8 6 3.8798 -3.4530 -0.4694 9 7 3.2960 -4.5424 -0.0198 10 14 5.3044 -3.5846 -1.6705 11 1 6.5818 -3.6606 -0.9170 12 1 5.1437 -4.8079 -2.4969 13 1 5.3202 -2.3899 -2.5524 14 6 1.0717 -0.5514 2.3127 15 6 0.9494 0.9251 2.6946 16 6 -0.0385 1.0720 3.8536 17 6 0.4656 0.2739 5.0577 18 7 1.7807 0.7842 5.4675 19 6 0.5878 -1.2027 4.6758 20 6 1.5764 -1.3495 3.5165 21 1 -0.3633 0.6121 0.8254 22 1 -0.3633 0.4087 -0.9428 23 1 -0.3632 -1.0209 0.1174 24 1 1.8934 -0.5138 -0.8899 25 1 3.1275 1.4435 0.0739 26 1 1.7382 1.9346 -0.9247 27 1 1.6175 1.9773 0.8507 28 1 2.5498 -2.6209 1.8424 29 1 1.4054 -2.5682 0.4802 30 1 3.6045 -5.4142 -0.3127 31 1 0.0957 -0.9301 2.0089 32 1 1.9253 1.3038 2.9983 33 1 0.5899 1.4936 1.8369 34 1 -1.0143 0.6935 3.5495 35 1 -0.1253 2.1239 4.1260 36 1 -0.2380 0.3789 5.8836 37 1 1.7265 1.7583 5.7249 38 1 2.1643 0.2322 6.2200 39 1 -0.3880 -1.5812 4.3716 40 1 0.9474 -1.7712 5.5334 41 1 1.6635 -2.4014 3.2445 42 1 2.5523 -0.9707 3.8203 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086432390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:06 Heat of formation + Delta-G solvation = -20.196364 kcal Electronic energy + Delta-G solvation = -18889.030422 eV Core-core repulsion = 16288.766479 eV Total energy + Delta-G solvation = -2600.263944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79903 -37.96567 -34.99069 -33.54510 -32.46669 -31.06294 -29.29515 -28.01641 -27.36873 -24.44857 -23.11321 -22.62591 -20.41008 -19.80402 -18.33442 -17.08788 -16.59073 -16.54015 -16.40355 -15.58774 -15.50541 -14.88639 -14.60136 -14.22390 -14.09581 -13.65615 -13.34674 -13.06282 -13.02971 -12.85314 -12.67392 -12.53937 -12.44037 -12.38083 -12.07326 -11.92474 -11.85141 -11.67032 -11.39776 -11.21698 -10.80098 -10.60772 -10.41227 -9.32622 -8.77124 -8.17148 -6.26099 1.39012 1.41019 1.51857 2.41068 3.14058 3.32952 3.77416 3.85146 3.99683 4.15181 4.28017 4.34856 4.42714 4.52438 4.59889 4.62027 4.70224 4.76337 4.80427 4.86759 4.97746 5.01834 5.03664 5.10428 5.12103 5.21955 5.26700 5.33797 5.40745 5.46857 5.50618 5.56952 5.68350 5.73362 5.81154 6.16684 6.43985 6.55328 6.79637 6.86972 6.93832 7.42892 8.93370 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027200 B = 0.007210 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.179378 B = 3882.418156 C = 4384.743068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 C -0.135 4.135 4 N -0.532 5.532 5 C 0.208 3.792 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.265 1.265 14 C 0.088 3.912 15 C -0.100 4.100 16 C -0.109 4.109 17 C 0.099 3.901 18 N -0.849 5.849 19 C -0.107 4.107 20 C -0.101 4.101 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.025 0.975 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.013 0.987 29 H -0.051 1.051 30 H 0.262 0.738 31 H 0.020 0.980 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.348 0.652 38 H 0.344 0.656 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.024 0.976 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 12.764 8.612 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.036 4.036 3 C -0.192 4.192 4 N -0.256 5.256 5 C 0.082 3.918 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.198 4.198 9 N -0.577 5.577 10 Si 0.791 3.209 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.190 1.190 14 C -0.020 4.020 15 C -0.137 4.137 16 C -0.147 4.147 17 C -0.012 4.012 18 N -0.381 5.381 19 C -0.145 4.145 20 C -0.139 4.139 21 H 0.100 0.900 22 H 0.086 0.914 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.031 0.969 29 H -0.033 1.033 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.042 0.958 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.735 12.623 7.989 16.387 hybrid contribution -0.371 -1.272 -0.071 1.327 sum -7.106 11.351 7.918 15.558 Atomic orbital electron populations 1.22451 0.96829 1.00447 1.03070 1.21632 0.93072 0.95954 0.92982 1.22015 1.00765 0.94241 1.02205 1.62285 1.43804 1.13647 1.05843 1.19404 0.93026 0.84666 0.94739 1.21506 1.16169 0.92267 1.25672 0.92370 1.25892 0.99874 0.95339 0.98661 1.70096 1.43302 0.98135 1.46140 0.85433 0.79133 0.77669 0.78692 1.19901 1.20734 1.18964 1.21653 0.92540 0.97172 0.90679 1.21753 1.00456 0.93820 0.97658 1.21595 0.98089 1.00443 0.94584 1.21229 0.90130 0.93520 0.96345 1.58583 1.25257 1.07740 1.46542 1.21564 0.98794 0.96690 0.97470 1.21447 1.00017 0.97496 0.94921 0.90001 0.91403 0.95582 0.93398 0.94005 0.91769 0.90360 0.96920 1.03342 0.92876 0.96230 0.91355 0.90726 0.91656 0.90235 0.93386 0.83870 0.84329 0.91956 0.91747 0.95771 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.74 7.81 71.98 0.56 -5.18 16 2 C 0.07 2.90 2.57 44.92 0.12 3.01 16 3 C -0.13 -4.38 9.12 71.98 0.66 -3.72 16 4 N -0.53 -23.95 4.26 -850.38 -3.62 -27.57 16 5 C 0.21 11.65 4.36 85.56 0.37 12.02 16 6 C -0.52 -30.75 8.12 25.60 0.21 -30.55 16 7 H 0.06 3.42 7.54 -2.91 -0.02 3.40 16 8 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 9 N -0.94 -58.41 13.29 21.45 0.28 -58.12 16 10 Si 0.97 46.08 29.54 68.60 2.03 48.11 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 C 0.09 3.26 1.42 44.91 0.06 3.33 16 15 C -0.10 -2.86 3.45 30.60 0.11 -2.75 16 16 C -0.11 -2.37 5.61 30.60 0.17 -2.20 16 17 C 0.10 2.13 3.57 44.92 0.16 2.29 16 18 N -0.85 -17.56 7.72 -168.68 -1.30 -18.87 16 19 C -0.11 -2.92 5.57 30.61 0.17 -2.75 16 20 C -0.10 -3.77 4.61 30.61 0.14 -3.63 16 21 H 0.08 2.38 4.87 -2.39 -0.01 2.37 16 22 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.03 0.98 7.41 -2.39 -0.02 0.97 16 24 H 0.05 2.26 6.68 -2.39 -0.02 2.25 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.08 2.22 4.73 -2.39 -0.01 2.21 16 28 H 0.01 0.77 5.63 -2.39 -0.01 0.76 16 29 H -0.05 -3.15 8.04 -2.39 -0.02 -3.17 16 30 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.02 0.77 6.00 -2.38 -0.01 0.75 16 32 H 0.07 2.17 7.60 -2.39 -0.02 2.15 16 33 H 0.07 2.02 3.47 -2.39 -0.01 2.01 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.35 5.65 9.04 -89.69 -0.81 4.84 16 38 H 0.34 6.44 8.99 -89.69 -0.81 5.63 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.02 1.06 6.11 -2.39 -0.01 1.05 16 42 H 0.06 2.53 7.61 -2.39 -0.02 2.51 16 Total: -1.00 -67.53 304.96 -0.03 -67.56 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -0.61 Total: 18.58 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 3.19 Total: -29.68 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -4.64 Total: -104.56 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -67.53 -0.03 -67.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.361 kcal (2) G-P(sol) polarization free energy of solvation -67.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds