Wall clock time and date at job start Mon Mar 30 2020 03:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46666 * 2 1 4 4 H 1.08997 * 109.47335 * 304.14418 * 3 2 1 5 5 C 1.50704 * 109.47085 * 184.14754 * 3 2 1 6 6 H 1.07996 * 120.00302 * 240.00500 * 5 3 2 7 7 C 1.37878 * 119.99697 * 59.99854 * 5 3 2 8 8 N 1.31508 * 120.00527 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99771 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47092 * 60.00109 * 9 7 5 11 11 H 1.48499 * 109.46980 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46951 * 300.00232 * 9 7 5 13 13 N 1.46895 * 109.47017 * 64.15223 * 3 2 1 14 14 C 1.46903 * 110.99992 * 205.52580 * 13 3 2 15 15 H 1.09006 * 109.47113 * 323.92330 * 14 13 3 16 16 C 1.53000 * 109.47102 * 83.91881 * 14 13 3 17 17 C 1.52996 * 109.47153 * 203.92294 * 14 13 3 18 18 C 1.52994 * 109.47394 * 64.99860 * 17 14 13 19 19 H 1.08999 * 110.36889 * 307.35051 * 18 17 14 20 20 C 1.54384 * 110.41580 * 184.99692 * 18 17 14 21 21 C 1.54258 * 105.06066 * 217.36676 * 20 18 17 22 22 C 1.54380 * 105.06273 * 0.02562 * 21 20 18 23 23 N 1.48554 * 104.59728 * 23.84956 * 22 21 20 24 24 H 1.08995 * 109.46749 * 304.60483 * 1 2 3 25 25 H 1.08997 * 109.47336 * 64.61201 * 1 2 3 26 26 H 1.09006 * 109.46572 * 184.60782 * 1 2 3 27 27 H 1.09002 * 109.47056 * 240.00813 * 2 1 3 28 28 H 1.08994 * 109.47765 * 120.00108 * 2 1 3 29 29 H 0.96997 * 120.00618 * 179.97438 * 8 7 5 30 30 H 1.00895 * 111.00374 * 81.57342 * 13 3 2 31 31 H 1.08997 * 109.47166 * 55.06601 * 16 14 13 32 32 H 1.09007 * 109.46960 * 175.05633 * 16 14 13 33 33 H 1.08991 * 109.47270 * 295.05841 * 16 14 13 34 34 H 1.09009 * 109.46860 * 184.99737 * 17 14 13 35 35 H 1.09000 * 109.47276 * 304.99481 * 17 14 13 36 36 H 1.08995 * 110.32162 * 336.26626 * 20 18 17 37 37 H 1.08997 * 110.31914 * 98.36740 * 20 18 17 38 38 H 1.09005 * 110.31945 * 118.89850 * 21 20 18 39 39 H 1.08995 * 110.32291 * 241.00114 * 21 20 18 40 40 H 1.08994 * 110.40884 * 142.63425 * 22 21 20 41 41 H 1.09004 * 110.40475 * 265.07005 * 22 21 20 42 42 H 1.00895 * 111.00381 * 200.96574 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6172 1.9774 -0.8505 5 6 3.5435 1.4439 -0.1028 6 1 4.1378 1.8923 0.6796 7 6 4.1602 0.8726 -1.1956 8 7 3.4366 0.3269 -2.1484 9 14 6.0240 0.8736 -1.3226 10 1 6.5995 0.1445 -0.1640 11 1 6.4345 0.2040 -2.5829 12 1 6.5193 2.2735 -1.3222 13 7 1.6338 2.1054 1.2464 14 6 1.5452 3.5604 1.0642 15 1 2.3311 3.8900 0.3845 16 6 0.1790 3.9185 0.4759 17 6 1.7161 4.2551 2.4166 18 6 3.1282 3.9988 2.9468 19 1 3.3441 2.9304 2.9502 20 6 3.2847 4.5843 4.3667 21 6 4.7220 5.1425 4.4139 22 6 5.3128 4.8481 3.0183 23 7 4.1294 4.7304 2.1280 24 1 -0.3633 0.5836 0.8458 25 1 -0.3634 0.4406 -0.9284 26 1 -0.3633 -1.0244 0.0826 27 1 1.8934 -0.5137 -0.8901 28 1 1.8935 -0.5138 0.8899 29 1 3.8704 -0.0748 -2.9174 30 1 2.2621 1.8732 2.0009 31 1 -0.6080 3.5123 1.1112 32 1 0.0793 5.0027 0.4224 33 1 0.0924 3.4958 -0.5250 34 1 1.5623 5.3275 2.2962 35 1 0.9856 3.8603 3.1227 36 1 2.5623 5.3843 4.5281 37 1 3.1560 3.8022 5.1149 38 1 4.7050 6.2167 4.5984 39 1 5.2999 4.6354 5.1864 40 1 5.9516 5.6698 2.6949 41 1 5.8725 3.9128 3.0322 42 1 4.3567 4.2159 1.2904 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086496174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:04 Heat of formation + Delta-G solvation = -21.151418 kcal Electronic energy + Delta-G solvation = -18559.330996 eV Core-core repulsion = 15959.025638 eV Total energy + Delta-G solvation = -2600.305358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.69611 -36.49259 -33.72789 -31.56486 -30.00348 -29.85533 -28.76576 -25.93842 -24.95728 -22.72131 -21.18890 -20.10956 -19.47599 -19.13669 -16.85521 -16.22781 -15.25725 -15.04595 -14.55119 -14.09448 -13.47900 -13.15957 -12.76782 -12.66913 -12.29987 -12.04194 -11.85900 -11.57405 -11.42201 -11.39315 -11.20026 -11.10359 -10.97700 -10.84607 -10.66701 -10.48364 -10.32999 -10.07862 -9.82731 -9.55477 -9.37034 -8.99215 -8.37739 -8.26351 -7.17309 -5.99145 -4.12501 3.25320 3.31221 3.32743 4.37497 4.51008 4.81567 4.95183 5.18490 5.24818 5.35641 5.41273 5.57552 5.69047 5.80096 5.85419 5.96404 5.98998 6.10704 6.19512 6.23292 6.28992 6.35788 6.42781 6.52046 6.55815 6.65120 6.76129 6.83608 7.00404 7.09174 7.17944 7.22330 7.49034 7.59457 7.67321 7.79508 8.12527 8.20194 8.38722 8.73083 9.01520 9.54888 11.00473 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.009457 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.985466 B = 2960.149601 C = 4163.726361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.541 4.541 6 H 0.048 0.952 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.086 3.914 15 H 0.049 0.951 16 C -0.133 4.133 17 C -0.102 4.102 18 C 0.065 3.935 19 H 0.054 0.946 20 C -0.120 4.120 21 C -0.123 4.123 22 C 0.034 3.966 23 N -0.662 5.662 24 H 0.051 0.949 25 H 0.034 0.966 26 H 0.022 0.978 27 H 0.088 0.912 28 H 0.028 0.972 29 H 0.261 0.739 30 H 0.323 0.677 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 6.840 9.426 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.580 4.580 6 H 0.066 0.934 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.318 5.318 14 C -0.024 4.024 15 H 0.067 0.933 16 C -0.191 4.191 17 C -0.140 4.140 18 C -0.045 4.045 19 H 0.072 0.928 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.096 4.096 23 N -0.293 5.293 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.106 0.894 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.749 7.330 9.197 11.890 hybrid contribution 2.522 -0.822 -0.248 2.664 sum 0.773 6.509 8.949 11.093 Atomic orbital electron populations 1.21709 0.99062 0.98334 1.00396 1.21492 0.92082 0.99458 1.01426 1.19133 0.92352 0.91034 0.86701 0.94913 1.21763 0.92733 1.37976 1.05569 0.93364 1.24911 0.97645 0.95089 0.95727 1.69856 1.34870 1.37916 1.09505 0.86794 0.86443 0.78191 0.77369 1.20468 1.21235 1.20337 1.60979 1.55439 1.05937 1.09416 1.21324 0.96592 0.89633 0.94867 0.93333 1.21746 0.97491 0.98925 1.00972 1.21700 0.94316 1.00549 0.97417 1.22535 0.93701 0.96266 0.92042 0.92774 1.22335 0.96724 1.00208 0.96537 1.22266 0.96189 1.01059 0.96598 1.22858 0.93653 1.00120 0.92987 1.63692 1.08049 1.50725 1.06841 0.93025 0.94644 0.95845 0.89368 0.95364 0.92851 0.85859 0.92984 0.93921 0.92983 0.91551 0.91689 0.91310 0.91759 0.91531 0.91920 0.90727 0.94459 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.49 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.21 1.80 -68.86 -0.12 5.08 16 4 H 0.03 0.89 7.08 -51.93 -0.37 0.52 16 5 C -0.54 -14.06 8.29 -34.44 -0.29 -14.35 16 6 H 0.05 1.23 7.73 -52.49 -0.41 0.82 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.71 11.30 55.43 0.63 -24.08 16 9 Si 0.88 20.82 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.69 -13.94 5.39 -100.95 -0.54 -14.49 16 14 C 0.09 1.58 2.43 -67.71 -0.16 1.42 16 15 H 0.05 1.02 6.95 -51.93 -0.36 0.66 16 16 C -0.13 -2.29 9.36 37.16 0.35 -1.94 16 17 C -0.10 -1.57 4.40 -26.74 -0.12 -1.68 16 18 C 0.06 0.98 3.02 -66.05 -0.20 0.78 16 19 H 0.05 0.92 6.30 -51.93 -0.33 0.59 16 20 C -0.12 -1.52 6.55 -25.35 -0.17 -1.68 16 21 C -0.12 -1.46 7.00 -25.35 -0.18 -1.64 16 22 C 0.03 0.46 7.47 -2.19 -0.02 0.45 16 23 N -0.66 -10.59 7.05 -102.73 -0.72 -11.31 16 24 H 0.05 1.03 7.60 -51.93 -0.39 0.64 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 2.35 5.97 -51.93 -0.31 2.04 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.32 6.57 6.10 -39.29 -0.24 6.33 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.05 0.98 7.42 -51.93 -0.39 0.59 16 34 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.83 7.86 -51.93 -0.41 0.42 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.35 6.26 8.40 -39.29 -0.33 5.93 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -26.38 322.91 -9.31 -35.69 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.74 Total: 10.51 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -0.78 Total: -16.98 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.64 Total: -49.88 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.38 -9.31 -35.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086496174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.538 kcal (2) G-P(sol) polarization free energy of solvation -26.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds