Wall clock time and date at job start Mon Mar 30 2020 03:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46666 * 2 1 4 4 H 1.08997 * 109.47335 * 304.14418 * 3 2 1 5 5 C 1.50704 * 109.47085 * 184.14754 * 3 2 1 6 6 H 1.07996 * 120.00302 * 240.00500 * 5 3 2 7 7 C 1.37878 * 119.99697 * 59.99854 * 5 3 2 8 8 N 1.31508 * 120.00527 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99771 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47092 * 60.00109 * 9 7 5 11 11 H 1.48499 * 109.46980 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46951 * 300.00232 * 9 7 5 13 13 N 1.46895 * 109.47017 * 64.15223 * 3 2 1 14 14 C 1.46903 * 110.99992 * 205.52580 * 13 3 2 15 15 H 1.09006 * 109.47113 * 323.92330 * 14 13 3 16 16 C 1.53000 * 109.47102 * 83.91881 * 14 13 3 17 17 C 1.52996 * 109.47153 * 203.92294 * 14 13 3 18 18 C 1.52994 * 109.47394 * 64.99860 * 17 14 13 19 19 H 1.08999 * 110.36889 * 307.35051 * 18 17 14 20 20 C 1.54384 * 110.41580 * 184.99692 * 18 17 14 21 21 C 1.54258 * 105.06066 * 217.36676 * 20 18 17 22 22 C 1.54380 * 105.06273 * 0.02562 * 21 20 18 23 23 N 1.48554 * 104.59728 * 23.84956 * 22 21 20 24 24 H 1.08995 * 109.46749 * 304.60483 * 1 2 3 25 25 H 1.08997 * 109.47336 * 64.61201 * 1 2 3 26 26 H 1.09006 * 109.46572 * 184.60782 * 1 2 3 27 27 H 1.09002 * 109.47056 * 240.00813 * 2 1 3 28 28 H 1.08994 * 109.47765 * 120.00108 * 2 1 3 29 29 H 0.96997 * 120.00618 * 179.97438 * 8 7 5 30 30 H 1.00895 * 111.00374 * 81.57342 * 13 3 2 31 31 H 1.08997 * 109.47166 * 55.06601 * 16 14 13 32 32 H 1.09007 * 109.46960 * 175.05633 * 16 14 13 33 33 H 1.08991 * 109.47270 * 295.05841 * 16 14 13 34 34 H 1.09009 * 109.46860 * 184.99737 * 17 14 13 35 35 H 1.09000 * 109.47276 * 304.99481 * 17 14 13 36 36 H 1.08995 * 110.32162 * 336.26626 * 20 18 17 37 37 H 1.08997 * 110.31914 * 98.36740 * 20 18 17 38 38 H 1.09005 * 110.31945 * 118.89850 * 21 20 18 39 39 H 1.08995 * 110.32291 * 241.00114 * 21 20 18 40 40 H 1.08994 * 110.40884 * 142.63425 * 22 21 20 41 41 H 1.09004 * 110.40475 * 265.07005 * 22 21 20 42 42 H 1.00895 * 111.00381 * 200.96574 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6172 1.9774 -0.8505 5 6 3.5435 1.4439 -0.1028 6 1 4.1378 1.8923 0.6796 7 6 4.1602 0.8726 -1.1956 8 7 3.4366 0.3269 -2.1484 9 14 6.0240 0.8736 -1.3226 10 1 6.5995 0.1445 -0.1640 11 1 6.4345 0.2040 -2.5829 12 1 6.5193 2.2735 -1.3222 13 7 1.6338 2.1054 1.2464 14 6 1.5452 3.5604 1.0642 15 1 2.3311 3.8900 0.3845 16 6 0.1790 3.9185 0.4759 17 6 1.7161 4.2551 2.4166 18 6 3.1282 3.9988 2.9468 19 1 3.3441 2.9304 2.9502 20 6 3.2847 4.5843 4.3667 21 6 4.7220 5.1425 4.4139 22 6 5.3128 4.8481 3.0183 23 7 4.1294 4.7304 2.1280 24 1 -0.3633 0.5836 0.8458 25 1 -0.3634 0.4406 -0.9284 26 1 -0.3633 -1.0244 0.0826 27 1 1.8934 -0.5137 -0.8901 28 1 1.8935 -0.5138 0.8899 29 1 3.8704 -0.0748 -2.9174 30 1 2.2621 1.8732 2.0009 31 1 -0.6080 3.5123 1.1112 32 1 0.0793 5.0027 0.4224 33 1 0.0924 3.4958 -0.5250 34 1 1.5623 5.3275 2.2962 35 1 0.9856 3.8603 3.1227 36 1 2.5623 5.3843 4.5281 37 1 3.1560 3.8022 5.1149 38 1 4.7050 6.2167 4.5984 39 1 5.2999 4.6354 5.1864 40 1 5.9516 5.6698 2.6949 41 1 5.8725 3.9128 3.0322 42 1 4.3567 4.2159 1.2904 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086496174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:04 Heat of formation + Delta-G solvation = -37.654504 kcal Electronic energy + Delta-G solvation = -18560.046623 eV Core-core repulsion = 15959.025638 eV Total energy + Delta-G solvation = -2601.020985 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.94374 -38.08737 -35.44933 -33.49842 -31.30499 -31.06981 -30.27528 -27.83041 -26.23958 -24.58365 -22.38788 -21.36612 -21.21150 -20.55579 -18.71817 -17.54484 -16.89468 -16.34862 -16.29894 -15.54014 -15.10845 -14.72620 -14.49979 -13.78183 -13.76025 -13.61345 -13.22828 -13.09364 -12.97939 -12.87255 -12.78007 -12.59424 -12.47624 -12.37051 -12.18528 -12.05447 -11.74498 -11.47993 -11.44596 -11.24415 -11.10685 -10.85789 -10.43239 -9.52433 -8.95323 -8.02957 -6.24687 1.36434 1.37355 1.43714 2.38835 3.16268 3.35006 3.68325 3.78180 3.91113 4.16158 4.22036 4.34003 4.42085 4.62617 4.64833 4.73031 4.76835 4.80199 4.89650 4.93483 4.97680 4.99873 5.04926 5.10431 5.22278 5.23806 5.27323 5.30952 5.40201 5.45684 5.50072 5.57828 5.69173 5.82104 5.94820 6.15264 6.24301 6.29119 6.46840 6.90932 7.08310 7.46499 8.92824 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.009457 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.985466 B = 2960.149601 C = 4163.726361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.675 5.675 14 C 0.086 3.914 15 H 0.017 0.983 16 C -0.128 4.128 17 C -0.089 4.089 18 C 0.062 3.938 19 H 0.033 0.967 20 C -0.115 4.115 21 C -0.117 4.117 22 C 0.028 3.972 23 N -0.671 5.671 24 H 0.060 0.940 25 H 0.027 0.973 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.025 0.975 29 H 0.260 0.740 30 H 0.325 0.675 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.028 0.972 42 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 7.767 11.388 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.306 5.306 14 C -0.024 4.024 15 H 0.035 0.965 16 C -0.186 4.186 17 C -0.127 4.127 18 C -0.048 4.048 19 H 0.051 0.949 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.102 4.102 23 N -0.300 5.300 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.047 0.953 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.744 8.273 11.185 14.021 hybrid contribution 2.509 -1.081 -0.865 2.866 sum 0.766 7.192 10.320 12.602 Atomic orbital electron populations 1.21563 0.96486 0.99770 1.00402 1.21366 0.94379 0.98750 0.99709 1.18865 0.91265 0.91134 0.87080 0.98437 1.22065 0.93924 1.37245 1.05413 0.93332 1.25612 1.01589 0.95067 0.95633 1.69995 1.36322 1.38813 1.09948 0.85849 0.81752 0.78214 0.77228 1.19986 1.21243 1.19880 1.60931 1.54781 1.07195 1.07675 1.21364 0.96291 0.88442 0.96292 0.96527 1.21695 0.96946 1.00334 0.99584 1.21599 0.94947 1.00606 0.95593 1.22560 0.93308 0.95204 0.93775 0.94929 1.22332 0.97517 1.00803 0.94684 1.22271 0.95667 1.02054 0.95531 1.22986 0.93155 1.00063 0.93972 1.63752 1.09254 1.50261 1.06722 0.92063 0.95332 0.93822 0.92379 0.95646 0.93063 0.85704 0.91872 0.91679 0.95449 0.90625 0.90301 0.90209 0.90550 0.90278 0.90338 0.89918 0.95315 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.85 71.98 0.71 -4.39 16 2 C -0.10 -5.00 5.45 30.60 0.17 -4.84 16 3 C 0.23 11.14 1.80 44.17 0.08 11.22 16 4 H 0.00 -0.13 7.08 -2.39 -0.02 -0.15 16 5 C -0.55 -29.04 8.29 25.60 0.21 -28.83 16 6 H 0.05 2.52 7.73 -2.91 -0.02 2.50 16 7 C 0.02 1.14 5.29 84.66 0.45 1.59 16 8 N -0.91 -52.35 11.30 21.45 0.24 -52.10 16 9 Si 0.94 43.32 29.54 68.60 2.03 45.34 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 13 N -0.67 -27.42 5.39 -473.30 -2.55 -29.97 16 14 C 0.09 3.14 2.43 44.91 0.11 3.25 16 15 H 0.02 0.72 6.95 -2.38 -0.02 0.70 16 16 C -0.13 -4.28 9.36 71.98 0.67 -3.61 16 17 C -0.09 -2.59 4.40 30.59 0.13 -2.46 16 18 C 0.06 1.79 3.02 45.06 0.14 1.92 16 19 H 0.03 1.09 6.30 -2.39 -0.02 1.08 16 20 C -0.12 -2.58 6.55 31.49 0.21 -2.38 16 21 C -0.12 -2.45 7.00 31.49 0.22 -2.23 16 22 C 0.03 0.72 7.47 86.45 0.65 1.37 16 23 N -0.67 -21.01 7.05 -478.93 -3.37 -24.38 16 24 H 0.06 2.36 7.60 -2.39 -0.02 2.35 16 25 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.06 3.18 5.97 -2.39 -0.01 3.17 16 28 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.32 13.14 6.10 -89.70 -0.55 12.59 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.03 1.02 7.42 -2.39 -0.02 1.01 16 34 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 1.63 7.86 -2.39 -0.02 1.61 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.33 12.09 8.40 -89.70 -0.75 11.34 16 Total: -1.00 -57.10 322.91 -0.24 -57.34 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.32 Total: 33.15 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 3.74 Total: -29.38 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -5.68 Total: -106.45 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -57.10 -0.24 -57.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086496174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.688 kcal (2) G-P(sol) polarization free energy of solvation -57.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds